MD01G1198900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016398
Physical Location & Seq
Reverse (-)
29641948 .. 29644649
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1198900.v1.1.491

Sequence Viewer

Length: 384 bp
ATGGAGTTGTTGAACAGTAGGTCGTGGACGAACGAGAAGCACGTCAAGTTTTTGAACAGCATGGAGGAATCCTTCGTGCGTGCCATGTTTGAGAAGAAGAAGGATCACCGTCGTCCTCCTCGTCTCGACCGGTACTTTCCGGACACCTCTGACTCAACCCTAGATCTCAAAACCAGCAGCAGAATTTCCAAAAACCATAACTCTTCACAAGGTGGCAGAATGGGCGGTAGATGTCATAAAAGATCGAGGATGTTATCATCTCAGCCGTCCATTGCATCACAAGATCAGGTGGTCCCACAGATTAAGATCAGAACGGTTGATGATAAAGATGAAATAGAGCACCACAAAGCACCTCAGCTGGCACGGTCTGCACCTATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.7

Weight (kDa)

10.0

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 1 cut(s) 134
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 13, 55
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 183
AsiGI ACCGGT 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 163
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 305
BsaWI WCCGGW 2 cut(s) 129, 139
Bse118I RCCGGY 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 139
BseGI GGATG 1 cut(s) 255
BseJI GATNNNNATC 1 cut(s) 305
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 275, 368
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 130, 140
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 5 cut(s) 103, 163, 242, 283, 306
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 274, 367
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 129
BssMI GATC 5 cut(s) 103, 163, 242, 283, 306
Bst4CI ACNGT 4 cut(s) 17, 110, 316, 366
Bst6I CTCTTC 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 81, 360
BstDEI CTNAG 2 cut(s) 261, 354
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 5 cut(s) 106, 166, 245, 286, 309
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 5 cut(s) 103, 163, 242, 283, 306
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 222, 368
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 81, 360
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 129
CviAII CATG 2 cut(s) 61, 85
CviJI RGCY 2 cut(s) 265, 358
CviKI_1 RGCY 2 cut(s) 265, 358
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 261, 354
DpnI GATC 5 cut(s) 105, 165, 244, 285, 308
DpnII GATC 5 cut(s) 103, 163, 242, 283, 306
DraIII CACNNNGTG 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 64, 88
FaiI YATR 4 cut(s) 62, 86, 198, 237
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 60, 84
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 178
HapII CCGG 2 cut(s) 130, 140
Hin1II CATG 2 cut(s) 64, 88
HinfI GANTC 2 cut(s) 68, 152
HpaII CCGG 2 cut(s) 130, 140
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 151, 311
Hpy188III TCNNGA 2 cut(s) 125, 140
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 82, 94
HpyCH4III ACNGT 4 cut(s) 17, 110, 316, 366
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 275, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 368
HpyF3I CTNAG 2 cut(s) 261, 354
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 64, 88
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 103, 163, 242, 283, 306
LpnPI CCDG 5 cut(s) 143, 153, 187, 272, 344
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 284
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 42
MalI GATC 5 cut(s) 105, 165, 244, 285, 308
MboI GATC 5 cut(s) 103, 163, 242, 283, 306
MboII GAAGA 3 cut(s) 106, 109, 195
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 6 cut(s) 58, 126, 129, 157, 240, 363
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 2 cut(s) 130, 140
MwoI GCNNNNNNNGC 2 cut(s) 222, 368
NdeII GATC 5 cut(s) 103, 163, 242, 283, 306
NlaIII CATG 2 cut(s) 64, 88
NlaIV GGNNCC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 118
PfeI GAWTC 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 5 cut(s) 103, 163, 242, 283, 306
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 23, 45, 149, 214, 291, 355, 360, 376
SfaNI GCATC 1 cut(s) 284
SinI GGWCC 1 cut(s) 292
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 4 cut(s) 17, 110, 316, 366
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 126, 245
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 183
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.