Prupe.2G292300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016398
Physical Location & Seq
Reverse (-)
28538732 .. 28540887
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G292300.1

Sequence Viewer

Length: 357 bp
ATGCAGTCGCACGTGCAGAGCGGTAAAAAGAGGTCGTGGACGGACGAGAAGCACGTGCAGTTCTTGAACAGCATGGAGGCATCGTTTGTGCGCGCCATGTTTGAGAAGAAGGATCATCGCCTTCTTCGTCTCGACCGTTACTTGCCTGACACCTCAGACTCAACCCTAGATCTCAAAACCCTCAACAAAACCAAAAAACAAGGCGGCAGAATGGACGGCGGAGCAGACAAAAGATTAAGGAGGTTTTCATCTCAACCGTTCAATGCATCACAAGATCAGGTGGTCCCACAGTTTGAGATGAGAGCGGTTGGTGATAAAGACGAGAGAGACCACCTACATGTACCTGATCAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

9.52

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 21, 305
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 21, 204, 219, 305
AclWI GGATC 1 cut(s) 120
AcvI CACGTG 2 cut(s) 13, 55
AfaI GTAC 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 67, 262
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 134, 321
AlwI GGATC 1 cut(s) 120
AspLEI GCGC 2 cut(s) 93, 95
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 283
BbrPI CACGTG 2 cut(s) 13, 55
BceAI ACGGC 1 cut(s) 232
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 134, 321
BfaI CTAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 89, 275
BsaAI YACGTR 2 cut(s) 13, 55
BsaI GGTCTC 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
BseMII CTCAG 1 cut(s) 168
BsePI GCGCGC 1 cut(s) 91
BsgI GTGCAG 2 cut(s) 35, 77
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 134, 321
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 321
Bsp143I GATC 4 cut(s) 112, 169, 274, 346
BspACI CCGC 4 cut(s) 21, 204, 219, 305
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 321
BsrBI CCGCTC 2 cut(s) 21, 305
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 4 cut(s) 112, 169, 274, 346
Bst4CI ACNGT 3 cut(s) 137, 258, 291
BstBAI YACGTR 2 cut(s) 13, 55
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 93, 95
BstKTI GATC 4 cut(s) 115, 172, 277, 349
BstMAI GTCTC 2 cut(s) 134, 321
BstMBI GATC 4 cut(s) 112, 169, 274, 346
BstMCI CGRYCG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 341
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 93, 95
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 73, 97, 338
CviJI RGCY 1 cut(s) 352
CviKI_1 RGCY 1 cut(s) 352
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 1 cut(s) 154
DpnI GATC 4 cut(s) 114, 171, 276, 348
DpnII GATC 4 cut(s) 112, 169, 274, 346
EciI GGCGGA 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 283
Eco72I CACGTG 2 cut(s) 13, 55
EcoT22I ATGCAT 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 3 cut(s) 76, 100, 341
FaiI YATR 4 cut(s) 74, 98, 339, 355
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 72, 96, 337
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 167
GlaI GCGC 2 cut(s) 92, 94
GluI GCNGC 1 cut(s) 205
HhaI GCGC 2 cut(s) 93, 95
Hin1II CATG 3 cut(s) 76, 100, 341
Hin6I GCGC 2 cut(s) 91, 93
HinP1I GCGC 2 cut(s) 91, 93
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 64, 131
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 103, 131
HpyCH4III ACNGT 3 cut(s) 137, 258, 291
HpyCH4IV ACGT 2 cut(s) 12, 54
HpyCH4V TGCA 4 cut(s) 4, 16, 58, 266
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 2 cut(s) 12, 54
Hsp92II CATG 3 cut(s) 76, 100, 341
HspAI GCGC 2 cut(s) 91, 93
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 4 cut(s) 112, 169, 274, 346
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 159, 263
LweI GCATC 2 cut(s) 89, 275
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 12, 54
MaeIII GTNAC 1 cut(s) 137
MalI GATC 4 cut(s) 114, 171, 276, 348
MbiI CCGCTC 2 cut(s) 21, 305
MboI GATC 4 cut(s) 112, 169, 274, 346
MboII GAAGA 2 cut(s) 116, 118
MflI RGATCY 1 cut(s) 169
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 5 cut(s) 24, 70, 163, 191, 234
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 336
MvnI CGCG 1 cut(s) 93
NdeII GATC 4 cut(s) 112, 169, 274, 346
NlaIII CATG 3 cut(s) 76, 100, 341
NlaIV GGNNCC 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 341
PauI GCGCGC 1 cut(s) 91
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 124, 133
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 152
PmaCI CACGTG 2 cut(s) 13, 55
PmlI CACGTG 2 cut(s) 13, 55
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 2 cut(s) 13, 55
PscI ACATGT 1 cut(s) 337
PspCI CACGTG 2 cut(s) 13, 55
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 169
PteI GCGCGC 1 cut(s) 91
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 4 cut(s) 112, 169, 274, 346
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 152
SetI ASST 9 cut(s) 15, 35, 57, 155, 245, 282, 336, 346, 354
SfaNI GCATC 2 cut(s) 89, 275
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 336
SsiI CCGC 4 cut(s) 21, 204, 219, 305
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 137, 258, 291
TaiI ACGT 2 cut(s) 15, 57
TaqI TCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 283
XceI RCATGY 1 cut(s) 341
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.