FvH4_7g30890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012931
Physical Location & Seq
Reverse (-)
22393260 .. 22395079
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30890.t1

Sequence Viewer

Length: 702 bp
ATGGACTACGATTACCGGAAAACCTCATCCTACGGCGCACAGATCCCTCCCTACCGCCCCGCCGCGACTTCACAGCCGATGTACGGGCCTCCACAGCCGTCGTCGTCGTTGTACCCCAGGGTCGGTCAACAAGGTCAAGCGCCGCTCAATCCTCCCTATCACGGCGGCGGCGGAGGTCACCGTCATGTTCCTCACCACCAGACCGCAATCGCTTCAGCTCCTTCTACCTCGGGATTGGGCATTCGTGTTGCGATTAAGCCAGAGTATCGGATCACTCCTCCGCCTCAATTGTCGACGCAAGTCGGAGACATTCCCCGAAGCAATTTCCAATTTGACTTTGATTTCGAGAGGAAAGTCTTGGCCGAAGCAGAGAAGGAAACTCCGAATTGGAGCAAGCTGGGGCTGGACAACCTTCCGCCGCCTAAGGCTGCCGAGGCACCACCTTCTTCTTCTTCTTCGTCCACCTCGGGTTCTTTTGGTAATCCTGTTGTGAGGAAGTACGTCGATTCAGGGCTCAGCAGAAATGTAGTACCTCGTGCAGTTGCTACTTATGGAGACAATCCTGAGAAGGTTCGGGAATTTGTCAATGGGTTCAACCATTTACATGAGATGGGATTTCCTTCAGACAGTGTTGCCGATGCCCTTCTCATGTATGATAATGACAAGGAGAAGGCACTGGCCTATCTAATAAACAGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.28

Weight (kDa)

7.07

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 293
AccII CGCG 1 cut(s) 65
AclWI GGATC 2 cut(s) 37, 278
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 2 cut(s) 198, 606
AfaI GTAC 4 cut(s) 83, 113, 500, 531
AfiI CCNNNNNNNGG 3 cut(s) 83, 122, 161
AgsI TTSAA 1 cut(s) 595
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 218, 397
AluI AGCT 2 cut(s) 218, 397
Alw26I GTCTC 2 cut(s) 300, 549
AlwI GGATC 2 cut(s) 37, 278
Ama87I CYCGRG 2 cut(s) 229, 466
AoxI GGCC 3 cut(s) 86, 360, 678
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 38, 142
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 170, 185
AvaI CYCGRG 2 cut(s) 229, 466
AxyI CCTNAGG 1 cut(s) 423
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 516
BauI CACGAG 1 cut(s) 534
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 604
BceAI ACGGC 3 cut(s) 49, 82, 178
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 300, 549
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 6 cut(s) 63, 143, 166, 169, 419, 429
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 6 cut(s) 64, 144, 167, 170, 420, 430
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 2 cut(s) 229, 466
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 628
BoxI GACNNNNGTC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 515
BsaJI CCNNGG 5 cut(s) 116, 117, 228, 432, 465
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 122, 161
Bse1I ACTGG 1 cut(s) 681
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 5 cut(s) 116, 117, 228, 432, 465
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 83, 122, 161
BseMII CTCAG 2 cut(s) 529, 555
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 415
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 88, 362, 680
BshNI GGYRCC 1 cut(s) 436
BsiHKCI CYCGRG 2 cut(s) 229, 466
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 83, 122, 161
BsmAI GTCTC 2 cut(s) 300, 549
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 3 cut(s) 88, 362, 680
BsoBI CYCGRG 2 cut(s) 229, 466
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 42, 270
Bsp1720I GCTNAGC 1 cut(s) 515
BspANI GGCC 3 cut(s) 88, 362, 680
BspCNI CTCAG 2 cut(s) 528, 556
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 2 cut(s) 37, 278
BspT107I GGYRCC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 5 cut(s) 116, 117, 228, 432, 465
BssMI GATC 2 cut(s) 42, 270
BssSI CACGAG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 182, 629, 695
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 423, 515, 564
BstEII GGTNACC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 38, 142
BstKTI GATC 2 cut(s) 45, 273
BstMAI GTCTC 2 cut(s) 300, 549
BstMBI GATC 2 cut(s) 42, 270
BstMWI GCNNNNNNNGC 2 cut(s) 94, 434
BstNI CCWGG 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 3 cut(s) 88, 362, 680
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 634, 674
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 2 cut(s) 38, 142
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 304
Csp6I GTAC 4 cut(s) 82, 112, 499, 530
CviAII CATG 3 cut(s) 185, 605, 649
CviQI GTAC 4 cut(s) 82, 112, 499, 530
DdeI CTNAG 3 cut(s) 423, 515, 564
DpnI GATC 2 cut(s) 44, 272
DpnII GATC 2 cut(s) 42, 270
EaeI YGGCCR 1 cut(s) 360
EciI GGCGGA 3 cut(s) 186, 270, 405
Eco24I GRGCYC 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 198, 606
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 229, 466
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 516
FaeI CATG 3 cut(s) 188, 608, 652
FaiI YATR 5 cut(s) 186, 552, 606, 650, 654
FatI CATG 3 cut(s) 184, 604, 648
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 6 cut(s) 63, 143, 166, 169, 419, 429
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 6 cut(s) 63, 143, 166, 169, 419, 429
GlaI GCGC 2 cut(s) 37, 141
GluI GCNGC 6 cut(s) 63, 143, 166, 169, 419, 429
GsaI CCCAGC 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 3 cut(s) 88, 362, 680
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 304
HhaI GCGC 2 cut(s) 38, 142
Hin1II CATG 3 cut(s) 188, 608, 652
Hin6I GCGC 2 cut(s) 36, 140
HinP1I GCGC 2 cut(s) 36, 140
HincII GTYRAC 2 cut(s) 128, 294
HindII GTYRAC 2 cut(s) 128, 294
HinfI GANTC 1 cut(s) 506
HpaII CCGG 1 cut(s) 16
HphI GGTGA 2 cut(s) 170, 185
Hpy166II GTNNAC 3 cut(s) 128, 294, 462
Hpy188I TCNGA 4 cut(s) 270, 305, 384, 625
Hpy188III TCNNGA 4 cut(s) 231, 346, 563, 575
Hpy8I GTNNAC 3 cut(s) 128, 294, 462
Hpy99I CGWCG 5 cut(s) 103, 106, 109, 298, 506
HpyAV CCTTC 8 cut(s) 231, 367, 422, 453, 562, 630, 653, 664
HpyCH4III ACNGT 3 cut(s) 182, 629, 695
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 434
HpyF3I CTNAG 3 cut(s) 423, 515, 564
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 188, 608, 652
HspAI GCGC 2 cut(s) 36, 140
Kzo9I GATC 2 cut(s) 42, 270
LmnI GCTCC 2 cut(s) 223, 390
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 1 cut(s) 628
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 44, 272
MbiI CCGCTC 1 cut(s) 145
MboI GATC 2 cut(s) 42, 270
MboII GAAGA 4 cut(s) 438, 441, 444, 447
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 5 cut(s) 287, 322, 329, 385, 578
MmeI TCCRAC 1 cut(s) 283
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 183, 603
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 94, 434
NdeII GATC 2 cut(s) 42, 270
NlaIII CATG 3 cut(s) 188, 608, 652
NlaIV GGNNCC 1 cut(s) 438
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 176
PasI CCCWGGG 1 cut(s) 117
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 6 cut(s) 64, 144, 167, 170, 420, 430
PshAI GACNNNNGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 4 cut(s) 83, 113, 500, 531
RsaNI GTAC 4 cut(s) 82, 112, 499, 530
RseI CAYNNNNRTG 2 cut(s) 183, 603
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 6 cut(s) 63, 143, 166, 169, 419, 429
Sau3AI GATC 2 cut(s) 42, 270
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 183, 603
Sse9I AATT 5 cut(s) 287, 322, 329, 385, 578
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 3 cut(s) 182, 629, 695
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 293, 345, 504
TaqII GACCGA 1 cut(s) 113
TasI AATT 5 cut(s) 287, 322, 329, 385, 578
TauI GCSGC 5 cut(s) 65, 145, 168, 171, 421
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 634, 681
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 176
TspRI CASTG 2 cut(s) 634, 681
XapI RAATTY 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.