Rroxscaffold_4G00279820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012931
Physical Location & Seq
Forward (+)
2501595 .. 2503312
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279820.1

Sequence Viewer

Length: 699 bp
ATGGACTACGATTACCGCAAAACCTCATCATACGGCGCGCAGATCCCGCCCTACCGCCCCGCCTCGTCATCACAGCCGATGTACGGACCGCCACAGCCGTCGTCGTCGTTGTACCCCAGGGTCGGTCAACAACACGGTCAAGCGCCGGTTCCTACGCCGTCTCATGGCGGCGGAGGTCACCGTCCTGTCCCTCATCACCAGACTGCAACCACCTCGGCTCCTTCTTCTTCGGGGTTGGGCATTCGAGTTATGATAAAGCCAGAGTATCGGATCACTCCTCCGCCTCAATTGTTGACGCAAGTCGGAGACATACCCCGAAGCAATTTCCAATTTGACTTTGATTTCGAGAGGAAAGTTTTGGCTGAAGCGCAGAAGGAAACCCCGAATTGGGGCAAGCTGGGGTTGGAAAACCTTCCACCACCTAAGGCTGTGGAGCCACCGTCTTCTGCTTCCTCCTCCTCGGGTTCTATTGGTAACCCCGTCGTGAGGAAGTATGTCGCTTCAGGGCTCAGCCAAGAAGTAGTACCTCGTGCAGTTGCAACTTATGGTGACAATCCTGAGAAGGTTCGGGAATTTGTCCATGGGTTCAATGCTTTACATGAGATGGGGTTTCCTTCAGACAGTGTTGCCGATGCCCTTCTCATGTATGATAATGACAAGGAGAAAGCACTTGCCTATCTAATCAACAGTTCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.09

Weight (kDa)

7.07

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 8 cut(s) 16, 47, 55, 60, 89, 168, 171, 281
AclWI GGATC 2 cut(s) 37, 278
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 3 cut(s) 384, 486, 600
AfaI GTAC 3 cut(s) 83, 113, 525
AfiI CCNNNNNNNGG 7 cut(s) 83, 122, 164, 387, 388, 389, 486
AgsI TTSAA 1 cut(s) 589
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 165, 300
AlwI GGATC 2 cut(s) 37, 278
Ama87I CYCGRG 1 cut(s) 460
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 4 cut(s) 38, 40, 145, 370
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 170, 188, 560
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 423
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 435
BccI CCATC 1 cut(s) 598
BceAI ACGGC 3 cut(s) 49, 82, 142
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 165, 300
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 1 cut(s) 169
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 150, 219, 435
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 622
BoxI GACNNNNGTC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 509
BsaJI CCNNGG 5 cut(s) 116, 117, 213, 459, 580
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 425, 455
Bsc4I CCNNNNNNNGG 7 cut(s) 83, 122, 164, 387, 388, 389, 486
Bse118I RCCGGY 1 cut(s) 145
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 5 cut(s) 116, 117, 213, 459, 580
BseLI CCNNNNNNNGG 7 cut(s) 83, 122, 164, 387, 388, 389, 486
BseMII CTCAG 2 cut(s) 523, 549
BsePI GCGCGC 1 cut(s) 36
BseRI GAGGAG 3 cut(s) 267, 445, 448
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 7 cut(s) 83, 122, 164, 387, 388, 389, 486
BsmAI GTCTC 2 cut(s) 165, 300
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 42, 270
Bsp1720I GCTNAGC 1 cut(s) 509
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 8 cut(s) 16, 47, 55, 60, 89, 168, 171, 281
BspCNI CTCAG 2 cut(s) 522, 550
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 695
BspLI GGNNCC 3 cut(s) 150, 219, 435
BspPI GGATC 2 cut(s) 37, 278
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 5 cut(s) 116, 117, 213, 459, 580
BssHII GCGCGC 1 cut(s) 36
BssMI GATC 2 cut(s) 42, 270
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 5 cut(s) 137, 182, 441, 623, 689
BstC8I GCNNGC 2 cut(s) 38, 395
BstDEI CTNAG 3 cut(s) 423, 509, 558
BstDSI CCRYGG 1 cut(s) 580
BstEII GGTNACC 2 cut(s) 176, 473
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 4 cut(s) 38, 40, 145, 370
BstKTI GATC 2 cut(s) 45, 273
BstMAI GTCTC 2 cut(s) 165, 300
BstMBI GATC 2 cut(s) 42, 270
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 299
BstPI GGTNACC 2 cut(s) 176, 473
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 423
BtgI CCRYGG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 38, 395
CciI TCATGA 1 cut(s) 695
CfoI GCGC 4 cut(s) 38, 40, 145, 370
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 86
CpoI CGGWCCG 1 cut(s) 86
CseI GACGC 1 cut(s) 304
Csp6I GTAC 3 cut(s) 82, 112, 524
CspI CGGWCCG 1 cut(s) 86
CviAII CATG 5 cut(s) 164, 581, 599, 643, 696
CviQI GTAC 3 cut(s) 82, 112, 524
DdeI CTNAG 3 cut(s) 423, 509, 558
DpnI GATC 2 cut(s) 44, 272
DpnII GATC 2 cut(s) 42, 270
EciI GGCGGA 2 cut(s) 186, 270
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 3 cut(s) 384, 486, 600
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 460
Eco91I GGTNACC 2 cut(s) 176, 473
EcoO65I GGTNACC 2 cut(s) 176, 473
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 5 cut(s) 167, 584, 602, 646, 699
FaqI GGGAC 1 cut(s) 173
FatI CATG 5 cut(s) 163, 580, 598, 642, 695
FauI CCCGC 2 cut(s) 54, 67
Fnu4HI GCNGC 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 4 cut(s) 37, 39, 144, 369
GluI GCNGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 146
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 304
HhaI GCGC 4 cut(s) 38, 40, 145, 370
Hin1II CATG 5 cut(s) 167, 584, 602, 646, 699
Hin6I GCGC 4 cut(s) 36, 38, 143, 368
HinP1I GCGC 4 cut(s) 36, 38, 143, 368
HincII GTYRAC 2 cut(s) 128, 294
HindII GTYRAC 2 cut(s) 128, 294
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 170, 188, 560
Hpy166II GTNNAC 2 cut(s) 128, 294
Hpy188I TCNGA 3 cut(s) 270, 305, 619
Hpy188III TCNNGA 5 cut(s) 346, 484, 557, 569, 696
Hpy8I GTNNAC 2 cut(s) 128, 294
Hpy99I CGWCG 4 cut(s) 103, 106, 109, 485
HpyAV CCTTC 6 cut(s) 231, 367, 422, 556, 624, 647
HpyCH4III ACNGT 5 cut(s) 137, 182, 441, 623, 689
HpyCH4V TGCA 3 cut(s) 206, 533, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 423, 509, 558
Hsp92II CATG 5 cut(s) 167, 584, 602, 646, 699
HspAI GCGC 4 cut(s) 36, 38, 143, 368
Kzo9I GATC 2 cut(s) 42, 270
LmnI GCTCC 2 cut(s) 223, 433
LpnPI CCDG 9 cut(s) 103, 130, 159, 198, 212, 273, 383, 489, 570
LweI GCATC 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 176, 473, 548
MalI GATC 2 cut(s) 44, 272
MboI GATC 2 cut(s) 42, 270
MboII GAAGA 3 cut(s) 216, 219, 435
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 287, 322, 329, 385, 572
MmeI TCCRAC 2 cut(s) 283, 384
MroXI GAANNNNTTC 1 cut(s) 411
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 46
NcoI CCATGG 1 cut(s) 580
NdeII GATC 2 cut(s) 42, 270
NlaIII CATG 5 cut(s) 167, 584, 602, 646, 699
NlaIV GGNNCC 3 cut(s) 150, 219, 435
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 176, 548
PagI TCATGA 1 cut(s) 695
PasI CCCWGGG 1 cut(s) 117
PauI GCGCGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 411
PkrI GCNGC 1 cut(s) 170
PshAI GACNNNNGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 2 cut(s) 176, 473
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 150, 219, 435
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 42
PteI GCGCGC 1 cut(s) 36
RsaI GTAC 3 cut(s) 83, 113, 525
RsaNI GTAC 3 cut(s) 82, 112, 524
Rsr2I CGGWCCG 1 cut(s) 86
RsrII CGGWCCG 1 cut(s) 86
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 2 cut(s) 42, 270
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 510
SetI ASST 8 cut(s) 26, 178, 215, 399, 414, 424, 529, 567
SfaNI GCATC 1 cut(s) 622
SinI GGWCC 1 cut(s) 86
Sse9I AATT 5 cut(s) 287, 322, 329, 385, 572
SsiI CCGC 8 cut(s) 16, 47, 55, 60, 89, 168, 171, 281
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 5 cut(s) 137, 182, 441, 623, 689
TaqI TCGA 2 cut(s) 244, 345
TaqII GACCGA 1 cut(s) 113
TasI AATT 5 cut(s) 287, 322, 329, 385, 572
TauI GCSGC 1 cut(s) 171
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 2 cut(s) 176, 548
Tsp45I GTSAC 2 cut(s) 176, 548
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.