MD07G1283600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012931
Physical Location & Seq
Reverse (-)
34638738 .. 34640273
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1283600.v1.1.491

Sequence Viewer

Length: 684 bp
ATGGACTACGATTACAGATCCCGGTCCGGTCAAACGCCGAACTACCGTCCCGCCACGTCATCAGCGCCGTCTAGCCATCCGATGTACGGTCCCCCGTCATCGTCGTCGTCCATGTACCCGCGGGTGGGTCAACAGAGCCACGCGGCGGTTCCTCCCCCGTACGGAGGTAGCGCAGGCCGTCCTCTTCCCCACCACCAAACGGCAAACCCTCCTTCGTCTTCCTCCTCGGGATTGGGCATTCGAGTTACTATAAAACCGGATTATCGGATCACTCCTCCGCCTCCATTGTTATTGCAAGTTGGAGATATACCGCGGAGCAAGTTCCAGTTTGATTTTGATCTGGAGAGGAAAGTCTTGGCTGAATTAGAAAAGGAAACTCCGAATTGGGCCAAGCTTGGTCTGCAAAACCTTCCACCACCGAGGGCTGTAGAACCACCATCTCCGTCGGGTTCTAGCGCAGATCCGGTTGTCAGCAAATATATCGCTTCAGGGCTCAGCCGGGAAGCAGTCCCTCTTGCAGTAGCAAATCATGGAGACAATCCTACTAAGGTTCGAGAATATGTCAATGCATTCACCCTTCTCCGAGAGATGGGATTTCCACAGAACGCTGTTGCTGAAGCCCTAATGATGTATGACAACGACACGGACAAGGCACTGGCACATTTTCTCAACAATCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.57

Weight (kDa)

7.96

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBAP-1_UBA2 PF21267 194 - 219 1.2e-06 Ubiquitin-associated protein 1, UBA2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 121, 143, 313
AciI CCGC 8 cut(s) 51, 119, 121, 143, 146, 278, 311, 313
AclWI GGATC 3 cut(s) 12, 275, 455
AcuI CTGAAG 2 cut(s) 471, 636
AfaI GTAC 3 cut(s) 86, 116, 161
AfiI CCNNNNNNNGG 8 cut(s) 86, 124, 125, 145, 161, 164, 199, 589
AjiI CACGTC 1 cut(s) 57
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 3 cut(s) 12, 275, 455
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 2 cut(s) 175, 387
AspLEI GCGC 3 cut(s) 67, 173, 458
AspS9I GGNCC 3 cut(s) 24, 89, 387
AsuC2I CCSGG 2 cut(s) 22, 500
AsuHPI GGTGA 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 24, 89
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 210
BccI CCATC 3 cut(s) 84, 445, 583
BceAI ACGGC 3 cut(s) 52, 162, 216
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BcnI CCSGG 2 cut(s) 22, 500
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 72, 453
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 22, 500
Bme18I GGWCC 2 cut(s) 24, 89
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 24, 89, 387
BmiI GGNNCC 2 cut(s) 91, 150
BmrFI CCNGG 2 cut(s) 22, 500
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 22, 500
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 119, 225, 311, 419
BsaWI WCCGGW 3 cut(s) 26, 256, 463
Bsc4I CCNNNNNNNGG 8 cut(s) 86, 124, 125, 145, 161, 164, 199, 589
Bse1I ACTGG 2 cut(s) 325, 660
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 4 cut(s) 119, 225, 311, 419
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 8 cut(s) 86, 124, 125, 145, 161, 164, 199, 589
BseMII CTCAG 1 cut(s) 508
BseNI ACTGG 2 cut(s) 325, 660
BseRI GAGGAG 2 cut(s) 214, 264
Bsh1236I CGCG 3 cut(s) 121, 143, 313
BshFI GGCC 2 cut(s) 177, 389
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 5 cut(s) 22, 27, 257, 464, 499
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 3 cut(s) 33, 75, 494
BslI CCNNNNNNNGG 8 cut(s) 86, 124, 125, 145, 161, 164, 199, 589
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 3 cut(s) 33, 75, 494
BsmI GAATGC 2 cut(s) 237, 569
BsnI GGCC 2 cut(s) 177, 389
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 4 cut(s) 17, 267, 337, 460
Bsp1720I GCTNAGC 1 cut(s) 494
BspACI CCGC 8 cut(s) 51, 119, 121, 143, 146, 278, 311, 313
BspANI GGCC 2 cut(s) 177, 389
BspCNI CTCAG 1 cut(s) 507
BspFNI CGCG 3 cut(s) 121, 143, 313
BspLI GGNNCC 2 cut(s) 91, 150
BspPI GGATC 3 cut(s) 12, 275, 455
BsrI ACTGG 2 cut(s) 325, 660
BssECI CCNNGG 4 cut(s) 119, 225, 311, 419
BssMI GATC 4 cut(s) 17, 267, 337, 460
Bst4CI ACNGT 2 cut(s) 47, 89
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 494, 546
BstDSI CCRYGG 2 cut(s) 119, 311
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 3 cut(s) 121, 143, 313
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 3 cut(s) 67, 173, 458
BstKTI GATC 4 cut(s) 20, 270, 340, 463
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 4 cut(s) 17, 267, 337, 460
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 20, 498
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 3 cut(s) 121, 143, 313
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 17, 460
BstYI RGATCY 2 cut(s) 17, 460
BsuRI GGCC 2 cut(s) 177, 389
BtgI CCRYGG 2 cut(s) 119, 311
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 653
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 3 cut(s) 67, 173, 458
Cfr13I GGNCC 3 cut(s) 24, 89, 387
Cfr42I CCGCGG 2 cut(s) 122, 314
CpoI CGGWCCG 1 cut(s) 24
Csp6I GTAC 3 cut(s) 85, 115, 160
CspI CGGWCCG 1 cut(s) 24
CviAII CATG 2 cut(s) 112, 530
CviQI GTAC 3 cut(s) 85, 115, 160
DdeI CTNAG 2 cut(s) 494, 546
DpnI GATC 4 cut(s) 19, 269, 339, 462
DpnII GATC 4 cut(s) 17, 267, 337, 460
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 24, 89
Eco57I CTGAAG 2 cut(s) 471, 636
Eco88I CYCGRG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 495
FaeI CATG 2 cut(s) 115, 533
FaiI YATR 7 cut(s) 113, 251, 308, 480, 531, 561, 633
FaqI GGGAC 3 cut(s) 33, 75, 494
FatI CATG 2 cut(s) 111, 529
FauI CCCGC 3 cut(s) 58, 114, 126
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 72, 453
GlaI GCGC 3 cut(s) 66, 172, 457
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 2 cut(s) 177, 389
HapII CCGG 5 cut(s) 22, 27, 257, 464, 499
HhaI GCGC 3 cut(s) 67, 173, 458
Hin1II CATG 2 cut(s) 115, 533
Hin6I GCGC 3 cut(s) 65, 171, 456
HinP1I GCGC 3 cut(s) 65, 171, 456
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 392
HpaII CCGG 5 cut(s) 22, 27, 257, 464, 499
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 4 cut(s) 81, 267, 381, 584
Hpy188III TCNNGA 4 cut(s) 228, 341, 554, 681
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 3 cut(s) 106, 109, 448
HpyAV CCTTC 3 cut(s) 222, 419, 587
HpyCH4III ACNGT 2 cut(s) 47, 89
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 295, 403, 518, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 2 cut(s) 494, 546
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 2 cut(s) 115, 533
HspAI GCGC 3 cut(s) 65, 171, 456
KspI CCGCGG 2 cut(s) 122, 314
Kzo9I GATC 4 cut(s) 17, 267, 337, 460
LmnI GCTCC 1 cut(s) 315
MaeI CTAG 2 cut(s) 72, 453
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 19, 269, 339, 462
MboI GATC 4 cut(s) 17, 267, 337, 460
MboII GAAGA 2 cut(s) 176, 210
MflI RGATCY 2 cut(s) 17, 460
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 2 cut(s) 362, 382
MmeI TCCRAC 1 cut(s) 280
Mph1103I ATGCAT 1 cut(s) 571
MspA1I CMGCKG 2 cut(s) 121, 313
MspI CCGG 5 cut(s) 22, 27, 257, 464, 499
MspR9I CCNGG 2 cut(s) 22, 500
Mva1269I GAATGC 2 cut(s) 237, 569
MvnI CGCG 3 cut(s) 121, 143, 313
MwoI GCNNNNNNNGC 1 cut(s) 400
NciI CCSGG 2 cut(s) 22, 500
NdeII GATC 4 cut(s) 17, 267, 337, 460
NlaIII CATG 2 cut(s) 115, 533
NlaIV GGNNCC 2 cut(s) 91, 150
NsiI ATGCAT 1 cut(s) 571
PctI GAATGC 2 cut(s) 237, 569
Pfl23II CGTACG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 145
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 91, 150
PspPI GGNCC 3 cut(s) 24, 89, 387
PsuI RGATCY 2 cut(s) 17, 460
RsaI GTAC 3 cut(s) 86, 116, 161
RsaNI GTAC 3 cut(s) 85, 115, 160
Rsr2I CGGWCCG 1 cut(s) 24
RsrII CGGWCCG 1 cut(s) 24
SacII CCGCGG 2 cut(s) 122, 314
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 17, 267, 337, 460
Sau96I GGNCC 3 cut(s) 24, 89, 387
ScrFI CCNGG 2 cut(s) 22, 500
SduI GDGCHC 1 cut(s) 495
SetI ASST 5 cut(s) 59, 169, 396, 411, 552
SfcI CTRYAG 1 cut(s) 426
Sfr303I CCGCGG 2 cut(s) 122, 314
SgrBI CCGCGG 2 cut(s) 122, 314
SinI GGWCC 2 cut(s) 24, 89
Sse9I AATT 2 cut(s) 362, 382
SsiI CCGC 8 cut(s) 51, 119, 121, 143, 146, 278, 311, 313
SspMI CTAG 2 cut(s) 72, 453
StyD4I CCNGG 2 cut(s) 20, 498
TaaI ACNGT 2 cut(s) 47, 89
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 241, 553
TasI AATT 2 cut(s) 362, 382
TauI GCSGC 1 cut(s) 146
TscAI CASTG 1 cut(s) 660
TspGWI ACGGA 3 cut(s) 177, 432, 659
TspRI CASTG 1 cut(s) 660
VpaK11BI GGWCC 2 cut(s) 24, 89
XspI CTAG 2 cut(s) 72, 453
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.