Prupe.2G306000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012931
Physical Location & Seq
Reverse (-)
29143870 .. 29145718
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G306000.1

Sequence Viewer

Length: 684 bp
ATGGACTACGATTACAGGACCAGGTCCGGTTCGCCATACGACTCTCATGTCTACCGTCCTGCCACGTCATCAGCGCCGTCTAGTCATCCGATGTACGGACCTCCATCGTCGTCGTCTATGTACCCTCGGGTGGGTCAACAGGGGCAAACGGCGGCTCCTCCTCCGTACGCTCACTCAGGCCGTCCCCTTCCCCACCACCAAACCACAACTCCTTCCTCTTCTTCTTCTTCCGGATTGGGCATTCGAGTTACTATAAAACCAGAGTATCGGATCACTCCTCCGCCTACTTTTTCATTTCAAGTTGGAGATATACCCCGCAGCAGTTTCCAATTCGATTTTGATTTTGAGAGGAAAGTCTTGGCTGAATTAGAAAAGGAAACTCAGAATTGGGCCAAGCTTGGGCTGGAAAACCCTCCCCAAAGGCCTGTGGAATCACCATCTTCATCCGGTTCTGTTGCAGATCCCATTGTCAGCAAATACATTGCTTCAGGTCTCAGCCGAGAAGCAGTTCCTCTTGCCGTAGCAAATTATGGAGACAATCCTACTAAGGTTCGAGAATTTGCCAAATCATTCACCCAACTTCGAGAGATGGGATTTGCATCAAACGATGTTGCCGAAGCCCTAATCATGTATGAAAATGACACGGACAAGGCAGTGGCACATTTTCTCAACAGTTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.82

Weight (kDa)

6.3

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 3 cut(s) 152, 281, 316
AclWI GGATC 2 cut(s) 278, 455
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 3 cut(s) 95, 122, 167
AfiI CCNNNNNNNGG 4 cut(s) 95, 130, 131, 399
AgsI TTSAA 1 cut(s) 299
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 497, 528
AlwI GGATC 2 cut(s) 278, 455
Ama87I CYCGRG 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 3 cut(s) 178, 390, 422
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 4 cut(s) 18, 24, 98, 390
AsuHPI GGTGA 2 cut(s) 426, 565
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 3 cut(s) 18, 24, 98
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BbvI GCAGC 1 cut(s) 330
BccI CCATC 3 cut(s) 112, 445, 583
BceAI ACGGC 4 cut(s) 61, 165, 165, 503
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 497, 528
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 2 cut(s) 153, 319
BlsI GCNGC 2 cut(s) 154, 320
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 3 cut(s) 18, 24, 98
BmeT110I CYCGRG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 4 cut(s) 18, 24, 98, 390
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 3 cut(s) 26, 230, 446
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 193, 223
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 130, 131, 399
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 598
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 85, 443
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 95, 130, 131, 399
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 189, 395, 508
BseRI GAGGAG 3 cut(s) 147, 150, 267
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 3 cut(s) 180, 392, 424
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 27, 231, 447
BsiWI CGTACG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 4 cut(s) 95, 130, 131, 399
BsmAI GTCTC 2 cut(s) 497, 528
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 3 cut(s) 180, 392, 424
Bso31I GGTCTC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 2 cut(s) 270, 460
BspACI CCGC 3 cut(s) 152, 281, 316
BspANI GGCC 3 cut(s) 180, 392, 424
BspCNI CTCAG 3 cut(s) 188, 394, 507
BspEI TCCGGA 1 cut(s) 230
BspHI TCATGA 1 cut(s) 680
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 2 cut(s) 278, 455
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 270, 460
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 56, 674
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 4 cut(s) 175, 381, 494, 546
BstF5I GGATG 2 cut(s) 85, 443
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 273, 463
BstMAI GTCTC 2 cut(s) 497, 528
BstMBI GATC 2 cut(s) 270, 460
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 460
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 3 cut(s) 180, 392, 424
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 85, 443
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 660
CciI TCATGA 1 cut(s) 680
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 4 cut(s) 18, 24, 98, 390
CsiI ACCWGGT 1 cut(s) 20
Csp6I GTAC 3 cut(s) 94, 121, 166
CviAII CATG 3 cut(s) 47, 628, 681
CviJI RGCY 9 cut(s) 155, 180, 362, 392, 397, 403, 424, 498, 620
CviKI_1 RGCY 9 cut(s) 155, 180, 362, 392, 397, 403, 424, 498, 620
CviQI GTAC 3 cut(s) 94, 121, 166
DdeI CTNAG 4 cut(s) 175, 381, 494, 546
DpnI GATC 2 cut(s) 272, 462
DpnII GATC 2 cut(s) 270, 460
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 497
Eco47I GGWCC 3 cut(s) 18, 24, 98
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 50, 631, 684
FaiI YATR 9 cut(s) 37, 48, 119, 254, 311, 531, 629, 633, 682
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 46, 627, 680
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 153, 319
FokI GGATG 2 cut(s) 72, 430
Fsp4HI GCNGC 2 cut(s) 153, 319
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 153, 319
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 3 cut(s) 180, 392, 424
HapII CCGG 3 cut(s) 27, 231, 447
HhaI GCGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 50, 631, 684
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 41, 431
HpaII CCGG 3 cut(s) 27, 231, 447
HphI GGTGA 2 cut(s) 426, 565
Hpy166II GTNNAC 2 cut(s) 52, 137
Hpy188I TCNGA 3 cut(s) 90, 270, 384
Hpy188III TCNNGA 4 cut(s) 231, 554, 584, 681
Hpy8I GTNNAC 2 cut(s) 52, 137
Hpy99I CGWCG 2 cut(s) 112, 115
HpyAV CCTTC 2 cut(s) 197, 222
HpyCH4III ACNGT 2 cut(s) 56, 674
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 458, 599
HpyF3I CTNAG 4 cut(s) 175, 381, 494, 546
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 3 cut(s) 50, 631, 684
HspAI GCGC 1 cut(s) 74
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 2 cut(s) 270, 460
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 608
MabI ACCWGGT 1 cut(s) 20
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 272, 462
MboI GATC 2 cut(s) 270, 460
MboII GAAGA 5 cut(s) 210, 213, 216, 219, 432
MflI RGATCY 1 cut(s) 460
MluCI AATT 5 cut(s) 329, 365, 385, 526, 557
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 9 cut(s) 111, 135, 168, 171, 226, 288, 342, 423, 522
MroI TCCGGA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 507
MspI CCGG 3 cut(s) 27, 231, 447
MspR9I CCNGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 22
NdeII GATC 2 cut(s) 270, 460
NlaIII CATG 3 cut(s) 50, 631, 684
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 680
PceI AGGCCT 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 431
Pfl23II CGTACG 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 154, 320
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspLI CGTACG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 4 cut(s) 18, 24, 98, 390
PsuI RGATCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 3 cut(s) 95, 122, 167
RsaNI GTAC 3 cut(s) 94, 121, 166
SatI GCNGC 2 cut(s) 153, 319
Sau3AI GATC 2 cut(s) 270, 460
Sau96I GGNCC 4 cut(s) 18, 24, 98, 390
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 22
SetI ASST 6 cut(s) 26, 68, 103, 399, 493, 552
SexAI ACCWGGT 1 cut(s) 20
SfaNI GCATC 1 cut(s) 608
SinI GGWCC 3 cut(s) 18, 24, 98
Sse9I AATT 5 cut(s) 329, 365, 385, 526, 557
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 3 cut(s) 152, 281, 316
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 56, 674
TaiI ACGT 1 cut(s) 68
TaqI TCGA 4 cut(s) 244, 333, 553, 583
TasI AATT 5 cut(s) 329, 365, 385, 526, 557
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 431
TscAI CASTG 1 cut(s) 660
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 4 cut(s) 282, 432, 648, 666
TspGWI ACGGA 3 cut(s) 111, 153, 659
TspRI CASTG 1 cut(s) 660
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 3 cut(s) 18, 24, 98
XapI RAATTY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.