Rh1AG440600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012931
Physical Location & Seq
Reverse (-)
66288775 .. 66290040
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG440600.1

Sequence Viewer

Length: 384 bp
ATGGACTACGATTACCGCAAAACCTCATCCTACGGCGCGCAGATCCCGCCCTACCGCCCCGCCTCGTCATCACAGCCGATGTACGGACCGCCGCAGCCGTCGTCGTCGTTGTACCCCAGGGTCGGTCAACAACACGGTCAAGCGCCGGGTTCTATTGGTAACCCCCTCGTGAGGAAGTATGTCGCTTCAGGGCGCAGCCAAGAAGTAGTACCTCGTGCAGTTGCAACTTATGGTGACAATCCTGAAAAGGTTCGGGAATTTGTCCATGGGTTCAACGCTTTACATGAGATGGGGTTTCCTTCAGACAGTGTTGCCGATGCCCTTCTCATGTATGATAATGACAAGGAGAAAGCACTTGCCTATCTAATCAACAGTTCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.91

Weight (kDa)

6.82

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53330
fragaria_vesca FvH4_7g30890 FvH4_7g30890
malus_domestica MD01G1213900.v1.1 MD07G1283600.v1.1
prunus_persica Prupe.2G306000_v2.0.a1
pyrus_communis pycom01g22460 pycom07g25770
rosa_chinensis RchiOBHm_Chr1g0379961
rosa_laevigata RLG00000026345
rosa_multiflora Rmu_sc0004184.1_g000017
rosa_roxburghii Rroxscaffold_4G00279820
rosa_rugosa Rorug01G0415900
rosa_samantha Rh1AG440600 Rh1BG396300 Rh1CG409500 Rh1DG427100
rosa_wichuraiana Rw1G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 6 cut(s) 16, 47, 55, 60, 89, 92
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 2 cut(s) 171, 285
AfaI GTAC 3 cut(s) 83, 113, 210
AfiI CCNNNNNNNGG 3 cut(s) 83, 122, 171
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 116
AlwI GGATC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 94, 195
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 4 cut(s) 38, 40, 145, 195
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 86
BauI CACGAG 2 cut(s) 167, 213
BbvI GCAGC 2 cut(s) 106, 207
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 49, 82
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 3 cut(s) 92, 95, 196
BlsI GCNGC 3 cut(s) 93, 96, 197
Bme1390I CCNGG 2 cut(s) 118, 147
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 118, 147
BmsI GCATC 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 116, 117, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 122, 171
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 116, 117, 265
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 83, 122, 171
BsePI GCGCGC 1 cut(s) 36
BseXI GCAGC 2 cut(s) 106, 207
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 3 cut(s) 83, 122, 171
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 6 cut(s) 16, 47, 55, 60, 89, 92
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 380
BspPI GGATC 1 cut(s) 37
BssECI CCNNGG 3 cut(s) 116, 117, 265
BssHII GCGCGC 1 cut(s) 36
BssMI GATC 1 cut(s) 42
BssSI CACGAG 2 cut(s) 167, 213
BssT1I CCWWGG 1 cut(s) 265
Bst2BI CACGAG 2 cut(s) 167, 213
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 137, 308, 374
BstC8I GCNNGC 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 4 cut(s) 38, 40, 145, 195
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 116, 145
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 106, 207
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 380
CfoI GCGC 4 cut(s) 38, 40, 145, 195
Cfr13I GGNCC 1 cut(s) 86
CpoI CGGWCCG 1 cut(s) 86
Csp6I GTAC 3 cut(s) 82, 112, 209
CspI CGGWCCG 1 cut(s) 86
CviAII CATG 4 cut(s) 266, 284, 328, 381
CviJI RGCY 3 cut(s) 76, 97, 198
CviKI_1 RGCY 3 cut(s) 76, 97, 198
CviQI GTAC 3 cut(s) 82, 112, 209
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 171, 285
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 4 cut(s) 269, 287, 331, 384
FaiI YATR 7 cut(s) 180, 231, 267, 285, 329, 333, 382
FatI CATG 4 cut(s) 265, 283, 327, 380
FauI CCCGC 2 cut(s) 54, 67
Fnu4HI GCNGC 3 cut(s) 92, 95, 196
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 92, 95, 196
GlaI GCGC 4 cut(s) 37, 39, 144, 194
GluI GCNGC 3 cut(s) 92, 95, 196
HaeII RGCGCY 1 cut(s) 146
HapII CCGG 1 cut(s) 146
HhaI GCGC 4 cut(s) 38, 40, 145, 195
Hin1II CATG 4 cut(s) 269, 287, 331, 384
Hin6I GCGC 4 cut(s) 36, 38, 143, 193
HinP1I GCGC 4 cut(s) 36, 38, 143, 193
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 4 cut(s) 169, 242, 254, 381
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 3 cut(s) 103, 106, 109
HpyAV CCTTC 2 cut(s) 309, 332
HpyCH4III ACNGT 3 cut(s) 137, 308, 374
HpyCH4V TGCA 2 cut(s) 218, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 4 cut(s) 269, 287, 331, 384
HspAI GCGC 4 cut(s) 36, 38, 143, 193
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 103, 130, 159, 174, 255
Lsp1109I GCAGC 2 cut(s) 106, 207
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 158, 233
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MflI RGATCY 1 cut(s) 42
MluCI AATT 1 cut(s) 257
MnlI CCTC 5 cut(s) 34, 73, 165, 176, 222
MroXI GAANNNNTTC 1 cut(s) 249
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 118, 147
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 265
NdeII GATC 1 cut(s) 42
NlaIII CATG 4 cut(s) 269, 287, 331, 384
NmuCI GTSAC 1 cut(s) 233
PagI TCATGA 1 cut(s) 380
PasI CCCWGGG 1 cut(s) 117
PauI GCGCGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 3 cut(s) 93, 96, 197
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 42
PteI GCGCGC 1 cut(s) 36
RsaI GTAC 3 cut(s) 83, 113, 210
RsaNI GTAC 3 cut(s) 82, 112, 209
Rsr2I CGGWCCG 1 cut(s) 86
RsrII CGGWCCG 1 cut(s) 86
SatI GCNGC 3 cut(s) 92, 95, 196
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 118, 147
SetI ASST 3 cut(s) 26, 214, 252
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 86
Sse9I AATT 1 cut(s) 257
SsiI CCGC 6 cut(s) 16, 47, 55, 60, 89, 92
StyD4I CCNGG 2 cut(s) 116, 145
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 137, 308, 374
TaqII GACCGA 1 cut(s) 113
TasI AATT 1 cut(s) 257
TauI GCSGC 1 cut(s) 94
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 94, 195
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.