Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

22431079 .. 22433501

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAATGGGACATGGAAATCGAGGAAATCGAGGCCGTGCTGGAGAAGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGCGCTCACTTTCTCCACTCCGTCAAGGCCCTCCGCCAGTCGTCGTCGGAGAAGGAGAAGAAGACGAAGAAGAACGACACCATCACCACCGCCGGAGAACTCTTCTACGGAAGCGACGCGGCGGCGGAGGAGGAGAGGCGGGCGGGGTTTGTGTTCGTGAAGGACTTCCGAGTCGAGGCGGAGGATGACTCGGCGGCGATAAGGGAGGCCAAGAGCCTTAATGCGATACGGACCGCGCTTGAGAACCTGGAGGACCAGCTCGAGTTCTTCCATACTGTACAGGTGCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAAAGCCGCATTGTTCTAGCACTGAGATTGTCTGAACACCATGGTAAGAAATACAAGGTTATTGAAGAAGCTCTCGCCTTTGTTGGAGATGTCTGTGATGCAAATGGCTTTGTTTCTCCCGAAAGTCTCTATGTTCCTCCAGTCACTCCTGGTGACAACTTGACGAACTCTGAAGGGAAGAGCTCTAACATCTTAATGAAAGTTCTTGTTTCAAGTGTAAATTTTGCCAAGAAGACTCTTAAGTTGGATAACATGGGTGGACTACTGGGAAATGCTGCATTGGTGGCAGTCAGCATGATCGCATTGGTGCATATGCAACAGGTTGCAGTTAAAGAGCATACACAGCTGGTGGAAGATAAAATCTACATGAACAGGAGTGCTAGAAAAACTTCCAGGACAGAGGGGGCATCATCCAGTAGTCGTCTCAGCAACTTGGATGTGCTATTAGCCAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.54

Weight (kDa)

6.03

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccII	CGCG	3 cut(s)	99, 215, 332
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	2 cut(s)	488, 636
AjnI	CCWGG	4 cut(s)	342, 571, 815, 872
AluBI	AGCT	5 cut(s)	70, 355, 494, 606, 769
AluI	AGCT	5 cut(s)	70, 355, 494, 606, 769
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	2 cut(s)	554, 851
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	33, 123, 303
ApeKI	GCWGC	4 cut(s)	382, 385, 404, 698
ApoI	RAATTY	1 cut(s)	643
Asp700I	GAANNNNTTC	2 cut(s)	260, 811
AspLEI	GCGC	2 cut(s)	101, 334
AspS9I	GGNCC	4 cut(s)	55, 124, 327, 349
AsuHPI	GGTGA	2 cut(s)	172, 587
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	3 cut(s)	55, 327, 349
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	2 cut(s)	164, 662
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	391, 394, 397, 685
BccI	CCATC	2 cut(s)	89, 185
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	4 cut(s)	344, 573, 817, 874
BcoDI	GTCTC	2 cut(s)	554, 851
BfaI	CTAG	2 cut(s)	440, 804
BfrI	CTTAAG	1 cut(s)	662
BisI	GCNGC	8 cut(s)	216, 219, 291, 383, 386, 405, 430, 699
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	8 cut(s)	217, 220, 292, 384, 387, 406, 431, 700
Bme1390I	CCNGG	4 cut(s)	344, 573, 817, 874
Bme18I	GGWCC	3 cut(s)	55, 327, 349
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	4 cut(s)	55, 124, 327, 349
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	4 cut(s)	344, 573, 817, 874
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	3 cut(s)	391, 511, 839
BmuI	ACTGGG	1 cut(s)	698
BpiI	GAAGAC	2 cut(s)	164, 662
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	3 cut(s)	62, 365, 546
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	463, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	4 cut(s)	133, 563, 693, 837
BseBI	CCWGG	4 cut(s)	344, 573, 817, 874
BseDI	CCNNGG	2 cut(s)	463, 873
BseGI	GGATG	4 cut(s)	81, 286, 833, 865
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	4 cut(s)	85, 384, 437, 862
BseNI	ACTGG	4 cut(s)	133, 563, 693, 837
BseRI	GAGGAG	2 cut(s)	239, 242
BseXI	GCAGC	4 cut(s)	391, 394, 397, 685
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	3 cut(s)	99, 215, 332
BshFI	GGCC	3 cut(s)	35, 125, 305
BsiHKAI	GWGCWC	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	554, 851
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	3 cut(s)	35, 125, 305
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	720
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	463
BspANI	GGCC	3 cut(s)	35, 125, 305
BspCNI	CTCAG	4 cut(s)	84, 385, 438, 861
BspFNI	CGCG	3 cut(s)	99, 215, 332
BspLI	GGNNCC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	596
BspTI	CTTAAG	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	4 cut(s)	133, 563, 693, 837
BssECI	CCNNGG	2 cut(s)	463, 873
BssMI	GATC	1 cut(s)	720
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	4 cut(s)	344, 573, 817, 874
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	203, 596
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	3 cut(s)	237, 390, 415
BstDEI	CTNAG	4 cut(s)	71, 393, 446, 848
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	4 cut(s)	81, 286, 833, 865
BstFNI	CGCG	3 cut(s)	99, 215, 332
BstHHI	GCGC	2 cut(s)	101, 334
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	2 cut(s)	554, 851
BstMBI	GATC	1 cut(s)	720
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 707, 766
BstNI	CCWGG	4 cut(s)	344, 573, 817, 874
BstSCI	CCNGG	4 cut(s)	342, 571, 815, 872
BstUI	CGCG	3 cut(s)	99, 215, 332
BstV1I	GCAGC	4 cut(s)	391, 394, 397, 685
BstV2I	GAAGAC	2 cut(s)	164, 662
BsuRI	GGCC	3 cut(s)	35, 125, 305
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	4 cut(s)	81, 286, 833, 865
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	3 cut(s)	237, 390, 415
CfoI	GCGC	2 cut(s)	101, 334
Cfr13I	GGNCC	4 cut(s)	55, 124, 327, 349
CpoI	CGGWCCG	1 cut(s)	327
CseI	GACGC	2 cut(s)	86, 221
Csp6I	GTAC	1 cut(s)	374
CspI	CGGWCCG	1 cut(s)	327
CviAII	CATG	5 cut(s)	13, 464, 676, 718, 790
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	71, 393, 446, 848
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	203, 596
EarI	CTCTTC	2 cut(s)	203, 596
EciI	GGCGGA	3 cut(s)	119, 236, 290
Ecl136II	GAGCTC	1 cut(s)	606
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	608
Eco47I	GGWCC	3 cut(s)	55, 327, 349
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	606
EcoO109I	RGGNCCY	2 cut(s)	55, 124
EcoRII	CCWGG	4 cut(s)	342, 571, 815, 872
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	5 cut(s)	16, 467, 679, 721, 793
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	5 cut(s)	12, 463, 675, 717, 789
FauI	CCCGC	4 cut(s)	104, 228, 232, 381
FauNDI	CATATG	1 cut(s)	735
Fnu4HI	GCNGC	8 cut(s)	216, 219, 291, 383, 386, 405, 430, 699
FokI	GGATG	4 cut(s)	68, 293, 820, 872
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	8 cut(s)	216, 219, 291, 383, 386, 405, 430, 699
FspBI	CTAG	2 cut(s)	440, 804
GlaI	GCGC	2 cut(s)	100, 333
GluI	GCNGC	8 cut(s)	216, 219, 291, 383, 386, 405, 430, 699
GsuI	CTGGAG	3 cut(s)	62, 365, 546
HaeIII	GGCC	3 cut(s)	35, 125, 305
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	2 cut(s)	86, 221
HhaI	GCGC	2 cut(s)	101, 334
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	16, 467, 679, 721, 793
Hin6I	GCGC	2 cut(s)	99, 332
HinP1I	GCGC	2 cut(s)	99, 332
HinfI	GANTC	3 cut(s)	267, 284, 658
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	172, 587
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	4 cut(s)	145, 266, 457, 595
Hpy188III	TCNNGA	2 cut(s)	253, 542
Hpy8I	GTNNAC	1 cut(s)	683
Hpy99I	CGWCG	4 cut(s)	80, 142, 145, 215
HpyAV	CCTTC	3 cut(s)	142, 250, 590
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	8 cut(s)	382, 407, 413, 524, 701, 733, 739, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 707, 766
HpyF3I	CTNAG	4 cut(s)	71, 393, 446, 848
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	16, 467, 679, 721, 793
HspAI	GCGC	2 cut(s)	99, 332
Kzo9I	GATC	1 cut(s)	720
LguI	GCTCTTC	1 cut(s)	596
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	4 cut(s)	391, 394, 397, 685
LweI	GCATC	3 cut(s)	391, 511, 839
MaeI	CTAG	2 cut(s)	440, 804
MaeIII	GTNAC	2 cut(s)	565, 575
MalI	GATC	1 cut(s)	722
MboI	GATC	1 cut(s)	720
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	2 cut(s)	408, 643
MlyI	GAGTC	3 cut(s)	276, 278, 652
MmeI	TCCRAC	3 cut(s)	123, 487, 648
MroXI	GAANNNNTTC	2 cut(s)	260, 811
MseI	TTAA	5 cut(s)	315, 617, 663, 753, 880
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	388, 769
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	4 cut(s)	344, 573, 817, 874
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	4 cut(s)	344, 573, 817, 874
MvnI	CGCG	3 cut(s)	99, 215, 332
MwoI	GCNNNNNNNGC	3 cut(s)	410, 707, 766
NcoI	CCATGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	1 cut(s)	720
NlaIII	CATG	5 cut(s)	16, 467, 679, 721, 793
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	2 cut(s)	565, 575
PaeR7I	CTCGAG	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	260, 811
PfoI	TCCNGGA	1 cut(s)	815
PkrI	GCNGC	8 cut(s)	217, 220, 292, 384, 387, 406, 431, 700
PleI	GAGTC	3 cut(s)	275, 278, 652
PpsI	GAGTC	3 cut(s)	275, 278, 652
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	4 cut(s)	342, 571, 815, 872
PspGI	CCWGG	4 cut(s)	342, 571, 815, 872
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	55, 124, 327, 349
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	617
Rsr2I	CGGWCCG	1 cut(s)	327
RsrII	CGGWCCG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	596
SaqAI	TTAA	5 cut(s)	315, 617, 663, 753, 880
SatI	GCNGC	8 cut(s)	216, 219, 291, 383, 386, 405, 430, 699
Sau3AI	GATC	1 cut(s)	720
Sau96I	GGNCC	4 cut(s)	55, 124, 327, 349
SchI	GAGTC	3 cut(s)	276, 278, 652
ScrFI	CCNGG	4 cut(s)	344, 573, 817, 874
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	391, 511, 839
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	3 cut(s)	55, 327, 349
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	3 cut(s)	335, 356, 662
SmoI	CTYRAG	3 cut(s)	335, 356, 662
Sse9I	AATT	2 cut(s)	408, 643
SspMI	CTAG	2 cut(s)	440, 804
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	4 cut(s)	342, 571, 815, 872
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	21, 30, 270, 357
TasI	AATT	2 cut(s)	408, 643
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	4 cut(s)	218, 221, 293, 432
Tru1I	TTAA	5 cut(s)	315, 617, 663, 753, 880
Tru9I	TTAA	5 cut(s)	315, 617, 663, 753, 880
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	565, 575
TseI	GCWGC	4 cut(s)	382, 385, 404, 698
Tsp45I	GTSAC	2 cut(s)	565, 575
TspDTI	ATGAA	3 cut(s)	17, 635, 806
TspGWI	ACGGA	3 cut(s)	106, 219, 340
TspRI	CASTG	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	3 cut(s)	55, 327, 349
XapI	RAATTY	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	2 cut(s)	260, 811
XspI	CTAG	2 cut(s)	440, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.