Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

20095931 .. 20098037

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTACTGCTGTGATTATCAATTTACACGTGTGGCTGACTTTGACCACTCAAATCACACGTTTCGCGCTCTGCAAACAAAATAAAACATTTTGGTTTTCTTCCTCCCCCAAATTTCCCTCCATGAAATGGGAAATCGAAGAAATCGAGGCAGTCCTCGAGAGGATTTGGGACCTCCACGATAAGCTCAGCGAAGCCATCCATTCCGTTTCCAGAGCTCACTTCCTCAACTCCGTAAAGTTCCGCAGAAATTCCGACAAGAAGAGGCGGCCGCGGACCAACGACGCCGCCGCCGCCGATGAGAACCGGGCTGGGTACGTGTACTTGAAGGACTTCCGAGTCGGGCACGACGATGACTTGGCGGTTCGGGAGGCCAAGAGCCTCAATGCGATTCGGACCGCGCTCGAGAACCTGGAGGACCAGCTTGAGTTTTTTCATACTCTGCAGGTGCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAGAGCCGTATTGCTCTAGCAACGAGATTGTCTGAACACCATGGTAAGAAGTACCAATTTATTGAGGAAGCCCTTGCCTTTGTTGGGGATGTCTGTGATGCAAGTCGTTTAGTATCTCCTGAAAGTCTTTATGGCCCTCCGATCAGTCCTTCTGGTGAGAAGTTGGTGGCCTCCAAAGGGAAGAAGCGTAATATTTTGATCAGATTTCTCATTTCAAGTATCACATTTGTTAAGAAAACCCTTAAGTTGGATAATACGGTTGGAATACTTGGAAATGCTGCGTTGGTGGCGCTTAGTATGATTGCGTTGGTGCATCTGAATCAGGTAGGTATTAAGGAGCATCCACAGAAGCTGGAAGATAAAATCTACATCAACAGAAACGTTAGAAAAACTTCCCCGTCCATTGGTCATTACAGCAACTTGGATGTTCTATTAGCTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

35.43

Weight (kDa)

9.53

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
AasI	GACNNNNNNGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccII	CGCG	3 cut(s)	68, 274, 401
AclI	AACGTT	1 cut(s)	873
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	113, 250
AcvI	CACGTG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	3 cut(s)	317, 323, 545
AfiI	CCNNNNNNNGG	5 cut(s)	129, 576, 669, 739, 896
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	4 cut(s)	28, 30, 59, 318
AgsI	TTSAA	2 cut(s)	328, 708
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	5 cut(s)	187, 218, 424, 844, 929
AluI	AGCT	5 cut(s)	187, 218, 424, 844, 929
Alw21I	GWGCWC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	844
Ama87I	CYCGRG	2 cut(s)	158, 404
AoxI	GGCC	4 cut(s)	269, 372, 625, 660
ApeKI	GCWGC	4 cut(s)	451, 454, 473, 770
ApoI	RAATTY	2 cut(s)	113, 250
Asp700I	GAANNNNTTC	2 cut(s)	332, 883
AspLEI	GCGC	3 cut(s)	70, 403, 784
AspS9I	GGNCC	5 cut(s)	172, 276, 396, 418, 626
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	659
AvaI	CYCGRG	2 cut(s)	158, 404
AvaII	GGWCC	4 cut(s)	172, 276, 396, 418
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	460, 463, 466, 757
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	413
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	2 cut(s)	509, 930
BfmI	CTRYAG	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	785
BfrI	CTTAAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	9 cut(s)	269, 272, 288, 291, 294, 452, 455, 474, 771
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	9 cut(s)	270, 273, 289, 292, 295, 453, 456, 475, 772
Bme1390I	CCNGG	2 cut(s)	308, 413
Bme18I	GGWCC	4 cut(s)	172, 276, 396, 418
BmeT110I	CYCGRG	2 cut(s)	158, 404
BmgT120I	GGNCC	5 cut(s)	172, 276, 396, 418, 626
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	308, 413
BmsI	GCATC	4 cut(s)	460, 580, 814, 841
BpmI	CTGGAG	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	2 cut(s)	31, 319
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	272, 532
Bsc4I	CCNNNNNNNGG	5 cut(s)	129, 576, 669, 739, 896
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	272, 532
BseGI	GGATG	4 cut(s)	198, 586, 832, 922
BseLI	CCNNNNNNNGG	5 cut(s)	129, 576, 669, 739, 896
BseMII	CTCAG	2 cut(s)	202, 453
BseSI	GKGCMC	1 cut(s)	348
BseX3I	CGGCCG	1 cut(s)	269
BseXI	GCAGC	4 cut(s)	460, 463, 466, 757
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	3 cut(s)	68, 274, 401
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	4 cut(s)	271, 374, 627, 662
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	158, 404
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	5 cut(s)	129, 576, 669, 739, 896
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	271, 374, 627, 662
BsoBI	CYCGRG	2 cut(s)	158, 404
Bsp1286I	GDGCHC	2 cut(s)	220, 348
Bsp143I	GATC	2 cut(s)	633, 690
Bsp1720I	GCTNAGC	1 cut(s)	188
Bsp19I	CCATGG	1 cut(s)	532
BspANI	GGCC	4 cut(s)	271, 374, 627, 662
BspCNI	CTCAG	2 cut(s)	201, 454
BspFNI	CGCG	3 cut(s)	68, 274, 401
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	447
BspMI	ACCTGC	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	734
BssECI	CCNNGG	2 cut(s)	272, 532
BssMI	GATC	2 cut(s)	633, 690
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	285
BstAFI	CTTAAG	1 cut(s)	734
BstBAI	YACGTR	2 cut(s)	31, 319
BstC8I	GCNNGC	2 cut(s)	459, 484
BstDEI	CTNAG	3 cut(s)	188, 462, 785
BstDSI	CCRYGG	2 cut(s)	272, 532
BstF5I	GGATG	4 cut(s)	198, 586, 832, 922
BstFNI	CGCG	3 cut(s)	68, 274, 401
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	3 cut(s)	70, 403, 784
BstKTI	GATC	2 cut(s)	636, 693
BstMBI	GATC	2 cut(s)	633, 690
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 451, 479, 779
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	306, 411
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	3 cut(s)	68, 274, 401
BstV1I	GCAGC	4 cut(s)	460, 463, 466, 757
BstZI	CGGCCG	1 cut(s)	269
BsuRI	GGCC	4 cut(s)	271, 374, 627, 662
BtgI	CCRYGG	2 cut(s)	272, 532
BtsCI	GGATG	4 cut(s)	198, 586, 832, 922
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	459, 484
CaiI	CAGNNNCTG	1 cut(s)	844
CciNI	GCGGCCGC	1 cut(s)	269
CfoI	GCGC	3 cut(s)	70, 403, 784
Cfr13I	GGNCC	5 cut(s)	172, 276, 396, 418, 626
Cfr42I	CCGCGG	1 cut(s)	275
CpoI	CGGWCCG	1 cut(s)	396
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	316, 322, 544
CspI	CGGWCCG	1 cut(s)	396
CviAII	CATG	2 cut(s)	124, 533
CviQI	GTAC	3 cut(s)	316, 322, 544
DdeI	CTNAG	3 cut(s)	188, 462, 785
DpnI	GATC	2 cut(s)	635, 692
DpnII	GATC	2 cut(s)	633, 690
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	269
EagI	CGGCCG	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	218
EclXI	CGGCCG	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	4 cut(s)	172, 276, 396, 418
Eco52I	CGGCCG	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	218
Eco72I	CACGTG	1 cut(s)	31
Eco88I	CYCGRG	2 cut(s)	158, 404
EcoICRI	GAGCTC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	2 cut(s)	127, 536
FaiI	YATR	5 cut(s)	125, 438, 534, 624, 791
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	123, 532
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	9 cut(s)	269, 272, 288, 291, 294, 452, 455, 474, 771
FokI	GGATG	4 cut(s)	185, 593, 819, 929
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	9 cut(s)	269, 272, 288, 291, 294, 452, 455, 474, 771
FspBI	CTAG	2 cut(s)	509, 930
GlaI	GCGC	3 cut(s)	69, 402, 783
GluI	GCNGC	9 cut(s)	269, 272, 288, 291, 294, 452, 455, 474, 771
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	4 cut(s)	271, 374, 627, 662
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	3 cut(s)	70, 403, 784
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	127, 536
Hin6I	GCGC	3 cut(s)	68, 401, 782
HinP1I	GCGC	3 cut(s)	68, 401, 782
HinfI	GANTC	3 cut(s)	339, 391, 811
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	6, 322
Hpy188I	TCNGA	7 cut(s)	256, 338, 396, 526, 633, 695, 810
Hpy188III	TCNNGA	5 cut(s)	160, 213, 368, 406, 611
Hpy8I	GTNNAC	2 cut(s)	6, 322
Hpy99I	CGWCG	2 cut(s)	287, 353
HpyAV	CCTTC	2 cut(s)	322, 651
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	4 cut(s)	30, 61, 318, 873
HpyCH4V	TGCA	7 cut(s)	75, 445, 451, 476, 482, 593, 805
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 451, 479, 779
HpyF3I	CTNAG	3 cut(s)	188, 462, 785
HpySE526I	ACGT	4 cut(s)	30, 61, 318, 873
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	127, 536
HspAI	GCGC	3 cut(s)	68, 401, 782
Ksp22I	TGATCA	1 cut(s)	690
KspI	CCGCGG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	633, 690
LmnI	GCTCC	2 cut(s)	490, 829
Lsp1109I	GCAGC	4 cut(s)	460, 463, 466, 757
LweI	GCATC	4 cut(s)	460, 580, 814, 841
MaeI	CTAG	2 cut(s)	509, 930
MaeII	ACGT	4 cut(s)	30, 61, 318, 873
MalI	GATC	2 cut(s)	635, 692
MboI	GATC	2 cut(s)	633, 690
MboII	GAAGA	5 cut(s)	93, 152, 274, 685, 860
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	220, 348
MluCI	AATT	5 cut(s)	22, 113, 250, 477, 548
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	3 cut(s)	279, 720, 733
MroXI	GAANNNNTTC	2 cut(s)	332, 883
MseI	TTAA	3 cut(s)	723, 735, 825
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	274, 457
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	308, 413
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	3 cut(s)	68, 274, 401
MwoI	GCNNNNNNNGC	4 cut(s)	293, 451, 479, 779
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	2 cut(s)	633, 690
NlaIII	CATG	2 cut(s)	127, 536
NlaIV	GGNNCC	1 cut(s)	173
NotI	GCGGCCGC	1 cut(s)	269
PaeR7I	CTCGAG	2 cut(s)	158, 404
PaqCI	CACCTGC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 348
PdmI	GAANNNNTTC	2 cut(s)	332, 883
PfeI	GAWTC	2 cut(s)	391, 811
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	9 cut(s)	270, 273, 289, 292, 295, 453, 456, 475, 772
PleI	GAGTC	1 cut(s)	347
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	2 cut(s)	31, 319
PpuMI	RGGWCCY	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	220
Psp1406I	AACGTT	1 cut(s)	873
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	5 cut(s)	172, 276, 396, 418, 626
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	844
RsaI	GTAC	3 cut(s)	317, 323, 545
RsaNI	GTAC	3 cut(s)	316, 322, 544
RseI	CAYNNNNRTG	1 cut(s)	351
Rsr2I	CGGWCCG	1 cut(s)	396
RsrII	CGGWCCG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	723, 735, 825
SatI	GCNGC	9 cut(s)	269, 272, 288, 291, 294, 452, 455, 474, 771
Sau3AI	GATC	2 cut(s)	633, 690
Sau96I	GGNCC	5 cut(s)	172, 276, 396, 418, 626
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	308, 413
SduI	GDGCHC	2 cut(s)	220, 348
SfaNI	GCATC	4 cut(s)	460, 580, 814, 841
SfcI	CTRYAG	1 cut(s)	443
Sfr274I	CTCGAG	2 cut(s)	158, 404
Sfr303I	CCGCGG	1 cut(s)	275
SgrBI	CCGCGG	1 cut(s)	275
SinI	GGWCC	4 cut(s)	172, 276, 396, 418
SlaI	CTCGAG	2 cut(s)	158, 404
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	4 cut(s)	158, 404, 425, 734
SmoI	CTYRAG	4 cut(s)	158, 404, 425, 734
Sse9I	AATT	5 cut(s)	22, 113, 250, 477, 548
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	2 cut(s)	509, 930
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	306, 411
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	4 cut(s)	33, 64, 321, 876
TaqI	TCGA	4 cut(s)	138, 147, 159, 405
TasI	AATT	5 cut(s)	22, 113, 250, 477, 548
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	5 cut(s)	271, 274, 290, 293, 296
TfiI	GAWTC	2 cut(s)	391, 811
Tru1I	TTAA	3 cut(s)	723, 735, 825
Tru9I	TTAA	3 cut(s)	723, 735, 825
TseI	GCWGC	4 cut(s)	451, 454, 473, 770
TspDTI	ATGAA	2 cut(s)	140, 425
TspGWI	ACGGA	2 cut(s)	196, 223
Van91I	CCANNNNNTGG	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	4 cut(s)	172, 276, 396, 418
XapI	RAATTY	2 cut(s)	113, 250
XhoI	CTCGAG	2 cut(s)	158, 404
XmnI	GAANNNNTTC	2 cut(s)	332, 883
XspI	CTAG	2 cut(s)	509, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.