Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

30801058 .. 30803139

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1214600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAATGGGACATGGAAATCGAAGAAATCGAGGCAGTCCTCGAGAGGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCGTTTCCAGAGCTCACTTCCTCAACTCCGTCAAGTCTCGCAGAAATTCCGACAAGAAGAAGCGGCGGCGGACCAACGACGCCGCTGCCGATGAGAACCGGGCCGGATACGTGTATTTGAAGGCCTTCCGAGTCGGGCACGACGATGACTCGGCGGTTCGGGAGGCCAAGAGCCTAAATGCCATTCGGACCGCTCTCGAGAACCTCGAGGACCAGCTTGAGTTTTTTCATACTGTGCAGGTGCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAGAGCCGTATTGTTCTAGCAATGAGATTGTCTGAACACCATGGTAAGAAGTACCGATTTATTGAGGAAGCCCTTGCCTTCGTTGGAGATGTCTGTGATGCAAGTCGTTTAGTATCTCCTGAAAGTCTTTGTGGCCCTCTGGTCAGTCCTTCTGGTGAGAAGTTGGTGACCTCCAAAGGGAAGAAGCGAAATATTTTGATCAGATTTCTCATTTCAAGTATCACATTTGTTAAGAAAACCCTTAAGTTGGATAATACGGGTGGAATACTTGGAAATGCTGCGTTGGTGGCGCTTAGTATGATTGCGTTTGTGCATCTGAATCAGGTAGGTATTAAGGAGCATCAACAGAAGCTGGAAGATAAAATCTACATCAACAGAAACGTTAGAAAAACTTCCCCGTCTATTGGTCATTCCAGCAACTTGGATGTTCTATTGGCTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

30.69

Weight (kDa)

9.45

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AbsI	CCTCGAGG	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	7 cut(s)	151, 154, 157, 171, 242, 279, 337
AclI	AACGTT	1 cut(s)	753
AcsI	RAATTY	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	78, 168
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	549, 619, 776
AflII	CTTAAG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	208, 588
AluBI	AGCT	4 cut(s)	70, 101, 304, 724
AluI	AGCT	4 cut(s)	70, 101, 304, 724
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	3 cut(s)	41, 284, 293
AoxI	GGCC	4 cut(s)	189, 210, 252, 505
ApeKI	GCWGC	5 cut(s)	173, 331, 334, 353, 650
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	2 cut(s)	212, 763
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	6 cut(s)	55, 159, 189, 276, 298, 506
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	539, 550
AvaI	CYCGRG	3 cut(s)	41, 284, 293
AvaII	GGWCC	4 cut(s)	55, 159, 276, 298
BaeGI	GKGCMC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	160, 340, 343, 346, 637
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciVI	GTATCC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	389, 810
BfoI	RGCGCY	1 cut(s)	665
BfrI	CTTAAG	1 cut(s)	614
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	8 cut(s)	152, 155, 171, 174, 332, 335, 354, 651
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	8 cut(s)	153, 156, 172, 175, 333, 336, 355, 652
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	4 cut(s)	55, 159, 276, 298
BmeT110I	CYCGRG	3 cut(s)	41, 284, 293
BmgT120I	GGNCC	6 cut(s)	55, 159, 189, 276, 298, 506
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	4 cut(s)	340, 460, 694, 721
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	199
BsaHI	GRCGYC	2 cut(s)	78, 168
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 619, 776
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	81, 802
BseLI	CCNNNNNNNGG	3 cut(s)	549, 619, 776
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	85, 333
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	5 cut(s)	160, 340, 343, 346, 637
BsgI	GTGCAG	2 cut(s)	344, 350
BshFI	GGCC	4 cut(s)	191, 212, 254, 507
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	3 cut(s)	41, 284, 293
BsiSI	CCGG	2 cut(s)	187, 192
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	3 cut(s)	549, 619, 776
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	4 cut(s)	191, 212, 254, 507
BsoBI	CYCGRG	3 cut(s)	41, 284, 293
Bsp1286I	GDGCHC	2 cut(s)	103, 228
Bsp143I	GATC	1 cut(s)	570
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	7 cut(s)	151, 154, 157, 171, 242, 279, 337
BspANI	GGCC	4 cut(s)	191, 212, 254, 507
BspCNI	CTCAG	2 cut(s)	84, 334
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	316
BspTI	CTTAAG	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	570
BssNI	GRCGYC	2 cut(s)	78, 168
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	2 cut(s)	78, 168
BstAFI	CTTAAG	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	339, 364
BstDEI	CTNAG	3 cut(s)	71, 342, 665
BstDSI	CCRYGG	1 cut(s)	412
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	81, 802
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	1 cut(s)	573
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	570
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 359, 659
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	160, 340, 343, 346, 637
BstXI	CCANNNNNNTGG	1 cut(s)	793
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	191, 212, 254, 507
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	81, 802
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	339, 364
CaiI	CAGNNNCTG	1 cut(s)	724
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	6 cut(s)	55, 159, 189, 276, 298, 506
CpoI	CGGWCCG	1 cut(s)	276
CseI	GACGC	2 cut(s)	86, 176
Csp6I	GTAC	1 cut(s)	424
CspI	CGGWCCG	1 cut(s)	276
CviAII	CATG	2 cut(s)	13, 413
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	71, 342, 665
DpnI	GATC	1 cut(s)	572
DpnII	GATC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	55, 159, 276, 298
Eco53kI	GAGCTC	1 cut(s)	101
Eco88I	CYCGRG	3 cut(s)	41, 284, 293
Eco91I	GGTNACC	1 cut(s)	538
EcoICRI	GAGCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	16, 416
FaiI	YATR	4 cut(s)	14, 318, 414, 671
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	2 cut(s)	12, 412
FauI	CCCGC	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	8 cut(s)	152, 155, 171, 174, 332, 335, 354, 651
FokI	GGATG	2 cut(s)	68, 809
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	8 cut(s)	152, 155, 171, 174, 332, 335, 354, 651
FspBI	CTAG	2 cut(s)	389, 810
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	8 cut(s)	152, 155, 171, 174, 332, 335, 354, 651
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	4 cut(s)	191, 212, 254, 507
HapII	CCGG	2 cut(s)	187, 192
HgaI	GACGC	2 cut(s)	86, 176
HhaI	GCGC	1 cut(s)	664
Hin1I	GRCGYC	2 cut(s)	78, 168
Hin1II	CATG	2 cut(s)	16, 416
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	3 cut(s)	219, 236, 691
HpaII	CCGG	2 cut(s)	187, 192
HphI	GGTGA	2 cut(s)	539, 550
Hpy188I	TCNGA	6 cut(s)	139, 218, 276, 406, 575, 690
Hpy188III	TCNNGA	6 cut(s)	43, 96, 248, 284, 286, 491
Hpy99I	CGWCG	3 cut(s)	80, 170, 233
HpyAV	CCTTC	4 cut(s)	202, 223, 460, 531
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	198, 753
HpyCH4V	TGCA	6 cut(s)	325, 331, 356, 362, 473, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 359, 659
HpyF3I	CTNAG	3 cut(s)	71, 342, 665
HpySE526I	ACGT	2 cut(s)	198, 753
Hsp92I	GRCGYC	2 cut(s)	78, 168
Hsp92II	CATG	2 cut(s)	16, 416
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	370, 709
Lsp1109I	GCAGC	5 cut(s)	160, 340, 343, 346, 637
LweI	GCATC	4 cut(s)	340, 460, 694, 721
MaeI	CTAG	2 cut(s)	389, 810
MaeII	ACGT	2 cut(s)	198, 753
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	1 cut(s)	572
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	1 cut(s)	570
MboII	GAAGA	4 cut(s)	35, 157, 565, 740
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	103, 228
MluCI	AATT	2 cut(s)	133, 357
MlyI	GAGTC	2 cut(s)	228, 230
MmeI	TCCRAC	3 cut(s)	162, 436, 600
MroXI	GAANNNNTTC	2 cut(s)	212, 763
MseI	TTAA	3 cut(s)	603, 615, 705
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	173, 337
MspCI	CTTAAG	1 cut(s)	614
MspI	CCGG	2 cut(s)	187, 192
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	331, 359, 659
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	1 cut(s)	570
NlaIII	CATG	2 cut(s)	16, 416
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	538
PaeR7I	CTCGAG	3 cut(s)	41, 284, 293
PaqCI	CACCTGC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 174, 228, 291
PdmI	GAANNNNTTC	2 cut(s)	212, 763
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	8 cut(s)	153, 156, 172, 175, 333, 336, 355, 652
PleI	GAGTC	2 cut(s)	227, 230
PpsI	GAGTC	2 cut(s)	227, 230
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	103
Psp1406I	AACGTT	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	6 cut(s)	55, 159, 189, 276, 298, 506
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	724
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	231
Rsr2I	CGGWCCG	1 cut(s)	276
RsrII	CGGWCCG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	603, 615, 705
SatI	GCNGC	8 cut(s)	152, 155, 171, 174, 332, 335, 354, 651
Sau3AI	GATC	1 cut(s)	570
Sau96I	GGNCC	6 cut(s)	55, 159, 189, 276, 298, 506
SchI	GAGTC	2 cut(s)	228, 230
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	103, 228
SfaNI	GCATC	4 cut(s)	340, 460, 694, 721
Sfr274I	CTCGAG	3 cut(s)	41, 284, 293
SinI	GGWCC	4 cut(s)	55, 159, 276, 298
SlaI	CTCGAG	3 cut(s)	41, 284, 293
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	5 cut(s)	41, 284, 293, 305, 614
SmoI	CTYRAG	5 cut(s)	41, 284, 293, 305, 614
Sse9I	AATT	2 cut(s)	133, 357
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	7 cut(s)	151, 154, 157, 171, 242, 279, 337
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	389, 810
SstI	GAGCTC	1 cut(s)	103
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	201, 756
TaqI	TCGA	5 cut(s)	21, 30, 42, 285, 294
TasI	AATT	2 cut(s)	133, 357
TauI	GCSGC	3 cut(s)	154, 157, 173
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	3 cut(s)	603, 615, 705
Tru9I	TTAA	3 cut(s)	603, 615, 705
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	5 cut(s)	173, 331, 334, 353, 650
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	2 cut(s)	17, 305
TspGWI	ACGGA	2 cut(s)	79, 106
Vha464I	CTTAAG	1 cut(s)	614
VpaK11BI	GGWCC	4 cut(s)	55, 159, 276, 298
XapI	RAATTY	1 cut(s)	133
XhoI	CTCGAG	3 cut(s)	41, 284, 293
XmnI	GAANNNNTTC	2 cut(s)	212, 763
XspI	CTAG	2 cut(s)	389, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.