Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

52127294 .. 52130192

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG396900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAATGGGACATGGAAATCGAGGAAATCGAGGCCGTGCTGGAGAAGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGCGCTCACTTCCTCAACTCCGTCAAGGCGCTGCGCAACTCGTCGGAGAAGAAGAAGAAGAGCGGCCTCCACCACGTCTACGGTGGAAACGACGCCGTCGCGGCGGCGGAGGAGAAAGGGGCCGGGTTCGTGTTCGTGAAGGACTTCCGAGTCGAGCAGGACGATGAGTTAAGGGAGGCGAAGAGCCTCAATGCTATAAGGACCGCGCTCGAGAACCTGGAGGACCAGCTCGAGTTTTTCCATACTGTGCAGGTTCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAAAGCCGCATTGTTCTAGCACTAAGATTGTCTGAACACCATGGTAAGAAATACAAGGTTATTGAAGAAGCCCTCGCCTTTGTTGGAGATGTCTGTGATGCAAATGGCTTTGTTTCTCCCGAAAATCTCTATGGTCCTCCAGTCACTCCTGGTGACAACTTGGCGAACTCTGAAGGGAAGTCTAATATTATAATGAAAGTTCTTGTTTCAAGTGTAAATTTTGCCAAGAAGACTCTTAAGTTGGATAACATGGGTGGACTACTGGGAAATGCTGCTTTGGTGGCAGTCAGCATGATCGCGTTGGTGCATATGCAGCAGGTAGCAGTTAAGGAGCATCCGCAGATGCTGGAAGATAAAATCTACGTGAACAGGAGTGCTAGAAAAACTTCCCGGATGGAGGGGGCTTCATCTACTGGTCGTCTCAGCAACTTGGATGTGCTATTAGCCAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.23

Weight (kDa)

6.38

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc16I	TGCGCA	1 cut(s)	131
Acc36I	ACCTGC	2 cut(s)	337, 700
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	4 cut(s)	99, 197, 302, 692
AciI	CCGC	9 cut(s)	97, 159, 197, 200, 203, 300, 358, 400, 731
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	2 cut(s)	78, 189
AfiI	CCNNNNNNNGG	1 cut(s)	790
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	458, 603
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	312, 541, 839
AluBI	AGCT	2 cut(s)	70, 325
AluI	AGCT	2 cut(s)	70, 325
Alw26I	GTCTC	1 cut(s)	818
AlwNI	CAGNNNCTG	1 cut(s)	739
Ama87I	CYCGRG	2 cut(s)	305, 326
AoxI	GGCC	3 cut(s)	33, 160, 216
ApeKI	GCWGC	5 cut(s)	127, 355, 374, 665, 706
ApoI	RAATTY	1 cut(s)	610
Asp700I	GAANNNNTTC	2 cut(s)	239, 778
AspLEI	GCGC	4 cut(s)	101, 127, 132, 304
AspS9I	GGNCC	5 cut(s)	55, 216, 297, 319, 527
AsuC2I	CCSGG	2 cut(s)	220, 784
AsuHPI	GGTGA	1 cut(s)	557
AvaI	CYCGRG	2 cut(s)	305, 326
AvaII	GGWCC	4 cut(s)	55, 297, 319, 527
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	5 cut(s)	114, 361, 367, 652, 718
BccI	CCATC	2 cut(s)	89, 781
BceAI	ACGGC	2 cut(s)	20, 176
BciT130I	CCWGG	3 cut(s)	314, 543, 841
BcnI	CCSGG	2 cut(s)	220, 784
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	2 cut(s)	410, 771
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	629
BfuAI	ACCTGC	2 cut(s)	337, 700
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	9 cut(s)	128, 160, 198, 201, 356, 375, 400, 666, 707
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	9 cut(s)	129, 161, 199, 202, 357, 376, 401, 667, 708
Bme1390I	CCNGG	5 cut(s)	220, 314, 543, 784, 841
Bme18I	GGWCC	4 cut(s)	55, 297, 319, 527
BmeT110I	CYCGRG	2 cut(s)	305, 326
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	55, 216, 297, 319, 527
BmiI	GGNNCC	2 cut(s)	56, 217
BmrFI	CCNGG	5 cut(s)	220, 314, 543, 784, 841
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	4 cut(s)	361, 481, 726, 736
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	3 cut(s)	62, 335, 516
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	220, 784
BsaAI	YACGTR	1 cut(s)	757
BsaHI	GRCGYC	2 cut(s)	78, 189
BsaJI	CCNNGG	2 cut(s)	433, 840
Bsc4I	CCNNNNNNNGG	1 cut(s)	790
Bse1I	ACTGG	3 cut(s)	533, 660, 811
BseBI	CCWGG	3 cut(s)	314, 543, 841
BseDI	CCNNGG	2 cut(s)	433, 840
BseGI	GGATG	4 cut(s)	81, 727, 792, 832
BseLI	CCNNNNNNNGG	1 cut(s)	790
BseMII	CTCAG	3 cut(s)	85, 354, 829
BseNI	ACTGG	3 cut(s)	533, 660, 811
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	114, 361, 367, 652, 718
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	4 cut(s)	99, 197, 302, 692
BshFI	GGCC	3 cut(s)	35, 162, 218
BsiHKCI	CYCGRG	2 cut(s)	305, 326
BsiSI	CCGG	2 cut(s)	219, 784
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	1 cut(s)	790
BsmAI	GTCTC	1 cut(s)	818
BsmBI	CGTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	3 cut(s)	35, 162, 218
BsoBI	CYCGRG	2 cut(s)	305, 326
Bsp143I	GATC	1 cut(s)	687
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	9 cut(s)	97, 159, 197, 200, 203, 300, 358, 400, 731
BspANI	GGCC	3 cut(s)	35, 162, 218
BspCNI	CTCAG	3 cut(s)	84, 355, 828
BspFNI	CGCG	4 cut(s)	99, 197, 302, 692
BspLI	GGNNCC	2 cut(s)	56, 217
BspMI	ACCTGC	2 cut(s)	337, 700
BspQI	GCTCTTC	2 cut(s)	149, 272
BspTI	CTTAAG	1 cut(s)	629
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	533, 660, 811
BssECI	CCNNGG	2 cut(s)	433, 840
BssMI	GATC	1 cut(s)	687
BssNI	GRCGYC	2 cut(s)	78, 189
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	3 cut(s)	314, 543, 841
Bst4CI	ACNGT	2 cut(s)	179, 343
Bst6I	CTCTTC	2 cut(s)	149, 272
BstACI	GRCGYC	2 cut(s)	78, 189
BstAFI	CTTAAG	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	2 cut(s)	360, 385
BstDEI	CTNAG	4 cut(s)	71, 363, 416, 815
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	81, 727, 792, 832
BstFNI	CGCG	4 cut(s)	99, 197, 302, 692
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	101, 127, 132, 304
BstKTI	GATC	1 cut(s)	690
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 352, 380, 674, 706
BstNI	CCWGG	3 cut(s)	314, 543, 841
BstSCI	CCNGG	5 cut(s)	218, 312, 541, 782, 839
BstUI	CGCG	4 cut(s)	99, 197, 302, 692
BstV1I	GCAGC	5 cut(s)	114, 361, 367, 652, 718
BstV2I	GAAGAC	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	35, 162, 218
BtgI	CCRYGG	1 cut(s)	433
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	81, 727, 792, 832
BveI	ACCTGC	2 cut(s)	337, 700
Cac8I	GCNNGC	2 cut(s)	360, 385
CaiI	CAGNNNCTG	1 cut(s)	739
CfoI	GCGC	4 cut(s)	101, 127, 132, 304
Cfr13I	GGNCC	5 cut(s)	55, 216, 297, 319, 527
CseI	GACGC	2 cut(s)	86, 197
CviAII	CATG	4 cut(s)	13, 434, 643, 685
DdeI	CTNAG	4 cut(s)	71, 363, 416, 815
DpnI	GATC	1 cut(s)	689
DpnII	GATC	1 cut(s)	687
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	149, 272
EarI	CTCTTC	2 cut(s)	149, 272
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	4 cut(s)	55, 297, 319, 527
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	2 cut(s)	305, 326
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	312, 541, 839
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	4 cut(s)	16, 437, 646, 688
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	4 cut(s)	12, 433, 642, 684
FauI	CCCGC	2 cut(s)	104, 351
FauNDI	CATATG	1 cut(s)	702
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	9 cut(s)	128, 160, 198, 201, 356, 375, 400, 666, 707
FokI	GGATG	4 cut(s)	68, 714, 799, 839
Fsp4HI	GCNGC	9 cut(s)	128, 160, 198, 201, 356, 375, 400, 666, 707
FspBI	CTAG	2 cut(s)	410, 771
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	4 cut(s)	100, 126, 131, 303
GluI	GCNGC	9 cut(s)	128, 160, 198, 201, 356, 375, 400, 666, 707
GsuI	CTGGAG	3 cut(s)	62, 335, 516
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	35, 162, 218
HapII	CCGG	2 cut(s)	219, 784
HgaI	GACGC	2 cut(s)	86, 197
HhaI	GCGC	4 cut(s)	101, 127, 132, 304
Hin1I	GRCGYC	2 cut(s)	78, 189
Hin1II	CATG	4 cut(s)	16, 437, 646, 688
Hin6I	GCGC	4 cut(s)	99, 125, 130, 302
HinP1I	GCGC	4 cut(s)	99, 125, 130, 302
HinfI	GANTC	2 cut(s)	246, 625
HpaII	CCGG	2 cut(s)	219, 784
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	175, 650, 760
Hpy188I	TCNGA	4 cut(s)	142, 245, 427, 565
Hpy188III	TCNNGA	3 cut(s)	232, 307, 512
Hpy8I	GTNNAC	3 cut(s)	175, 650, 760
Hpy99I	CGWCG	4 cut(s)	80, 142, 191, 197
HpyAV	CCTTC	2 cut(s)	229, 560
HpyCH4III	ACNGT	2 cut(s)	179, 343
HpyCH4IV	ACGT	2 cut(s)	171, 756
HpyCH4V	TGCA	6 cut(s)	346, 377, 383, 494, 700, 706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 352, 380, 674, 706
HpyF3I	CTNAG	4 cut(s)	71, 363, 416, 815
HpySE526I	ACGT	2 cut(s)	171, 756
Hsp92I	GRCGYC	2 cut(s)	78, 189
Hsp92II	CATG	4 cut(s)	16, 437, 646, 688
HspAI	GCGC	4 cut(s)	99, 125, 130, 302
Kzo9I	GATC	1 cut(s)	687
LguI	GCTCTTC	2 cut(s)	149, 272
LmnI	GCTCC	2 cut(s)	391, 724
Lsp1109I	GCAGC	5 cut(s)	114, 361, 367, 652, 718
LweI	GCATC	4 cut(s)	361, 481, 726, 736
MaeI	CTAG	2 cut(s)	410, 771
MaeII	ACGT	2 cut(s)	171, 756
MaeIII	GTNAC	2 cut(s)	535, 545
MalI	GATC	1 cut(s)	689
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	1 cut(s)	687
MboII	GAAGA	9 cut(s)	58, 157, 160, 163, 166, 289, 470, 634, 755
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	2 cut(s)	378, 610
MlyI	GAGTC	2 cut(s)	255, 619
MmeI	TCCRAC	3 cut(s)	120, 457, 615
MroXI	GAANNNNTTC	2 cut(s)	239, 778
MseI	TTAA	4 cut(s)	266, 630, 720, 847
MspA1I	CMGCKG	1 cut(s)	358
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	2 cut(s)	219, 784
MspR9I	CCNGG	5 cut(s)	220, 314, 543, 784, 841
MteI	GCGCNGCGC	1 cut(s)	128
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	3 cut(s)	314, 543, 841
MvnI	CGCG	4 cut(s)	99, 197, 302, 692
MwoI	GCNNNNNNNGC	5 cut(s)	197, 352, 380, 674, 706
NciI	CCSGG	2 cut(s)	220, 784
NcoI	CCATGG	1 cut(s)	433
NdeI	CATATG	1 cut(s)	702
NdeII	GATC	1 cut(s)	687
NlaIII	CATG	4 cut(s)	16, 437, 646, 688
NlaIV	GGNNCC	2 cut(s)	56, 217
NmuCI	GTSAC	2 cut(s)	535, 545
NsbI	TGCGCA	1 cut(s)	131
PaeR7I	CTCGAG	2 cut(s)	305, 326
PciSI	GCTCTTC	2 cut(s)	149, 272
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 183, 255
PdmI	GAANNNNTTC	2 cut(s)	239, 778
PflFI	GACNNNGTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	782
PkrI	GCNGC	9 cut(s)	129, 161, 199, 202, 357, 376, 401, 667, 708
PleI	GAGTC	2 cut(s)	254, 619
PpsI	GAGTC	2 cut(s)	254, 619
Ppu21I	YACGTR	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	312, 541, 839
PspGI	CCWGG	3 cut(s)	312, 541, 839
PspN4I	GGNNCC	2 cut(s)	56, 217
PspPI	GGNCC	5 cut(s)	55, 216, 297, 319, 527
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	149, 272
SaqAI	TTAA	4 cut(s)	266, 630, 720, 847
SatI	GCNGC	9 cut(s)	128, 160, 198, 201, 356, 375, 400, 666, 707
Sau3AI	GATC	1 cut(s)	687
Sau96I	GGNCC	5 cut(s)	55, 216, 297, 319, 527
SchI	GAGTC	2 cut(s)	255, 619
ScrFI	CCNGG	5 cut(s)	220, 314, 543, 784, 841
SetI	ASST	9 cut(s)	60, 72, 174, 315, 327, 351, 453, 714, 759
SfaNI	GCATC	4 cut(s)	361, 481, 726, 736
Sfr274I	CTCGAG	2 cut(s)	305, 326
SinI	GGWCC	4 cut(s)	55, 297, 319, 527
SlaI	CTCGAG	2 cut(s)	305, 326
SmlI	CTYRAG	3 cut(s)	305, 326, 629
SmoI	CTYRAG	3 cut(s)	305, 326, 629
Sse9I	AATT	2 cut(s)	378, 610
SsiI	CCGC	9 cut(s)	97, 159, 197, 200, 203, 300, 358, 400, 731
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	2 cut(s)	410, 771
StyD4I	CCNGG	5 cut(s)	218, 312, 541, 782, 839
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	179, 343
TaiI	ACGT	2 cut(s)	174, 759
TaqI	TCGA	5 cut(s)	21, 30, 249, 306, 327
TasI	AATT	2 cut(s)	378, 610
TauI	GCSGC	4 cut(s)	162, 200, 203, 402
Tru1I	TTAA	4 cut(s)	266, 630, 720, 847
Tru9I	TTAA	4 cut(s)	266, 630, 720, 847
TseFI	GTSAC	2 cut(s)	535, 545
TseI	GCWGC	5 cut(s)	127, 355, 374, 665, 706
Tsp45I	GTSAC	2 cut(s)	535, 545
TspDTI	ATGAA	3 cut(s)	17, 602, 789
TspGWI	ACGGA	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	4 cut(s)	55, 297, 319, 527
XapI	RAATTY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	2 cut(s)	305, 326
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	239, 778
XspI	CTAG	2 cut(s)	410, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.