Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

66329627 .. 66331626

Gene Structure 2000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG441300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAATGGGACATGGAAATCGAGGAAATCGAGGCCGTGCTGGAGAAGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGCGCTCACTTCCTCGACTCCGTCAGGGCGCTGCGCAACTCGTCGGAGAAGAAGAAGAAGAAGAGCGGCCTCCACCACGTCTACGGTGGAAACGACGCCGTGGCCGCGGCGGTGGAGGAGAAAGGGGCCGGGTTCGTGTTCGTGAAGGACTTCCTAGTCGAGCAGGACGATGAGTTAAGGGAGGCGAAGAGCCTCAATGCTATAAGGACCGCGCTCGAGAACCTGGAGGACCAGCTCGAGTTTTTCCATACTGTGCAGGTTCAGCAGCGAGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAAAGCCGCATTGTTCTAGCACTGAGATTGTCTGAACACCATGGTAAGAAATACAAGGTTATTGAAGAAGCCCTCGCCTTTGTTGGAGATGTCTGTGATGCAAATGGCTTTGTTTCTCCCGAAAATCTCTATGGTCCTCCAGTCACTCCTGGTGACAACTTGGCGAACTCTGAAGGGAAGTCTAATATTATAATGAAAGTTCTTGTTTCAAGTGTAAATTTTGCCAAGAAGACTCTTAAGTTGGATAACATGGGTGGACTACTGGGAAATGCTGCTTTGGTGGCAGTCAGCATGATCGCATTGGTGCATATGCAGCAGGTAGCAGTTAAGGAGCATCCGCAGATGCTGGAAGATAAAATCTACGTGAACAGGAGTGCTAGAAAAACTTCCCGGATGGAGGGGGCTTCATCTACTGGTCGTCTCAGCAACTTGGATGTGCTATTAGCCAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.44

Weight (kDa)

6.22

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc16I	TGCGCA	1 cut(s)	131
Acc36I	ACCTGC	2 cut(s)	343, 706
AccBSI	CCGCTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	3 cut(s)	99, 203, 308
AciI	CCGC	8 cut(s)	97, 162, 201, 203, 206, 306, 406, 737
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	2 cut(s)	78, 192
AfiI	CCNNNNNNNGG	1 cut(s)	796
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	464, 609
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	318, 547, 845
AluBI	AGCT	3 cut(s)	70, 331, 368
AluI	AGCT	3 cut(s)	70, 331, 368
Alw26I	GTCTC	1 cut(s)	824
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	311, 332
AoxI	GGCC	4 cut(s)	33, 163, 198, 222
ApeKI	GCWGC	5 cut(s)	127, 361, 380, 671, 712
ApoI	RAATTY	1 cut(s)	616
Asp700I	GAANNNNTTC	2 cut(s)	245, 784
AspLEI	GCGC	4 cut(s)	101, 127, 132, 310
AspS9I	GGNCC	5 cut(s)	55, 222, 303, 325, 533
AsuC2I	CCSGG	2 cut(s)	226, 790
AsuHPI	GGTGA	1 cut(s)	563
AvaI	CYCGRG	2 cut(s)	311, 332
AvaII	GGWCC	4 cut(s)	55, 303, 325, 533
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	5 cut(s)	114, 367, 373, 658, 724
BccI	CCATC	2 cut(s)	89, 787
BceAI	ACGGC	2 cut(s)	20, 179
BciT130I	CCWGG	3 cut(s)	320, 549, 847
BcnI	CCSGG	2 cut(s)	226, 790
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	3 cut(s)	251, 416, 777
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	635
BfuAI	ACCTGC	2 cut(s)	343, 706
BisI	GCNGC	9 cut(s)	128, 163, 201, 204, 362, 381, 406, 672, 713
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	9 cut(s)	129, 164, 202, 205, 363, 382, 407, 673, 714
Bme1390I	CCNGG	5 cut(s)	226, 320, 549, 790, 847
Bme18I	GGWCC	4 cut(s)	55, 303, 325, 533
BmeT110I	CYCGRG	2 cut(s)	311, 332
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	55, 222, 303, 325, 533
BmiI	GGNNCC	2 cut(s)	56, 223
BmrFI	CCNGG	5 cut(s)	226, 320, 549, 790, 847
BmrI	ACTGGG	1 cut(s)	671
BmsI	GCATC	4 cut(s)	367, 487, 732, 742
BmuI	ACTGGG	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	3 cut(s)	62, 341, 522
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	226, 790
BsaAI	YACGTR	1 cut(s)	763
BsaHI	GRCGYC	2 cut(s)	78, 192
BsaJI	CCNNGG	4 cut(s)	195, 201, 439, 846
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse1I	ACTGG	3 cut(s)	539, 666, 817
BseBI	CCWGG	3 cut(s)	320, 549, 847
BseDI	CCNNGG	4 cut(s)	195, 201, 439, 846
BseGI	GGATG	4 cut(s)	81, 733, 798, 838
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMII	CTCAG	4 cut(s)	85, 360, 413, 835
BseNI	ACTGG	3 cut(s)	539, 666, 817
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	5 cut(s)	114, 367, 373, 658, 724
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	3 cut(s)	99, 203, 308
BshFI	GGCC	4 cut(s)	35, 165, 200, 224
BsiHKCI	CYCGRG	2 cut(s)	311, 332
BsiSI	CCGG	2 cut(s)	225, 790
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	1 cut(s)	824
BsmBI	CGTCTC	1 cut(s)	824
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	4 cut(s)	35, 165, 200, 224
BsoBI	CYCGRG	2 cut(s)	311, 332
Bsp143I	GATC	1 cut(s)	693
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	439
BspACI	CCGC	8 cut(s)	97, 162, 201, 203, 206, 306, 406, 737
BspANI	GGCC	4 cut(s)	35, 165, 200, 224
BspCNI	CTCAG	4 cut(s)	84, 361, 414, 834
BspFNI	CGCG	3 cut(s)	99, 203, 308
BspLI	GGNNCC	2 cut(s)	56, 223
BspMI	ACCTGC	2 cut(s)	343, 706
BspQI	GCTCTTC	2 cut(s)	152, 278
BspTI	CTTAAG	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	539, 666, 817
BssECI	CCNNGG	4 cut(s)	195, 201, 439, 846
BssMI	GATC	1 cut(s)	693
BssNI	GRCGYC	2 cut(s)	78, 192
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	3 cut(s)	320, 549, 847
Bst4CI	ACNGT	2 cut(s)	182, 349
Bst6I	CTCTTC	2 cut(s)	152, 278
BstACI	GRCGYC	2 cut(s)	78, 192
BstAFI	CTTAAG	1 cut(s)	635
BstBAI	YACGTR	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	366, 391
BstDEI	CTNAG	4 cut(s)	71, 369, 422, 821
BstDSI	CCRYGG	3 cut(s)	195, 201, 439
BstF5I	GGATG	4 cut(s)	81, 733, 798, 838
BstFNI	CGCG	3 cut(s)	99, 203, 308
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	101, 127, 132, 310
BstKTI	GATC	1 cut(s)	696
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	1 cut(s)	693
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 358, 386, 680, 712
BstNI	CCWGG	3 cut(s)	320, 549, 847
BstSCI	CCNGG	5 cut(s)	224, 318, 547, 788, 845
BstUI	CGCG	3 cut(s)	99, 203, 308
BstV1I	GCAGC	5 cut(s)	114, 367, 373, 658, 724
BstV2I	GAAGAC	1 cut(s)	635
BsuRI	GGCC	4 cut(s)	35, 165, 200, 224
BtgI	CCRYGG	3 cut(s)	195, 201, 439
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	81, 733, 798, 838
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	2 cut(s)	343, 706
Cac8I	GCNNGC	2 cut(s)	366, 391
CaiI	CAGNNNCTG	1 cut(s)	745
CfoI	GCGC	4 cut(s)	101, 127, 132, 310
Cfr13I	GGNCC	5 cut(s)	55, 222, 303, 325, 533
Cfr42I	CCGCGG	1 cut(s)	204
CseI	GACGC	2 cut(s)	86, 200
CviAII	CATG	4 cut(s)	13, 440, 649, 691
DdeI	CTNAG	4 cut(s)	71, 369, 422, 821
DpnI	GATC	1 cut(s)	695
DpnII	GATC	1 cut(s)	693
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	152, 278
EarI	CTCTTC	2 cut(s)	152, 278
Eco130I	CCWWGG	1 cut(s)	439
Eco47I	GGWCC	4 cut(s)	55, 303, 325, 533
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	311, 332
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	318, 547, 845
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	4 cut(s)	16, 443, 652, 694
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	4 cut(s)	12, 439, 648, 690
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	9 cut(s)	128, 163, 201, 204, 362, 381, 406, 672, 713
FokI	GGATG	4 cut(s)	68, 720, 805, 845
Fsp4HI	GCNGC	9 cut(s)	128, 163, 201, 204, 362, 381, 406, 672, 713
FspBI	CTAG	3 cut(s)	251, 416, 777
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	4 cut(s)	100, 126, 131, 309
GluI	GCNGC	9 cut(s)	128, 163, 201, 204, 362, 381, 406, 672, 713
GsuI	CTGGAG	3 cut(s)	62, 341, 522
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	35, 165, 200, 224
HapII	CCGG	2 cut(s)	225, 790
HgaI	GACGC	2 cut(s)	86, 200
HhaI	GCGC	4 cut(s)	101, 127, 132, 310
Hin1I	GRCGYC	2 cut(s)	78, 192
Hin1II	CATG	4 cut(s)	16, 443, 652, 694
Hin6I	GCGC	4 cut(s)	99, 125, 130, 308
HinP1I	GCGC	4 cut(s)	99, 125, 130, 308
HinfI	GANTC	2 cut(s)	113, 631
HpaII	CCGG	2 cut(s)	225, 790
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	3 cut(s)	178, 656, 766
Hpy188I	TCNGA	3 cut(s)	142, 433, 571
Hpy188III	TCNNGA	3 cut(s)	238, 313, 518
Hpy8I	GTNNAC	3 cut(s)	178, 656, 766
Hpy99I	CGWCG	3 cut(s)	80, 142, 194
HpyAV	CCTTC	2 cut(s)	235, 566
HpyCH4III	ACNGT	2 cut(s)	182, 349
HpyCH4IV	ACGT	2 cut(s)	174, 762
HpyCH4V	TGCA	6 cut(s)	352, 383, 389, 500, 706, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 358, 386, 680, 712
HpyF3I	CTNAG	4 cut(s)	71, 369, 422, 821
HpySE526I	ACGT	2 cut(s)	174, 762
Hsp92I	GRCGYC	2 cut(s)	78, 192
Hsp92II	CATG	4 cut(s)	16, 443, 652, 694
HspAI	GCGC	4 cut(s)	99, 125, 130, 308
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	693
LguI	GCTCTTC	2 cut(s)	152, 278
LmnI	GCTCC	2 cut(s)	397, 730
Lsp1109I	GCAGC	5 cut(s)	114, 367, 373, 658, 724
LweI	GCATC	4 cut(s)	367, 487, 732, 742
MaeI	CTAG	3 cut(s)	251, 416, 777
MaeII	ACGT	2 cut(s)	174, 762
MaeIII	GTNAC	2 cut(s)	541, 551
MalI	GATC	1 cut(s)	695
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	1 cut(s)	693
MfeI	CAATTG	1 cut(s)	384
MluCI	AATT	2 cut(s)	384, 616
MlyI	GAGTC	2 cut(s)	107, 625
MmeI	TCCRAC	3 cut(s)	120, 463, 621
MroXI	GAANNNNTTC	2 cut(s)	245, 784
MseI	TTAA	4 cut(s)	272, 636, 726, 853
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	2 cut(s)	225, 790
MspR9I	CCNGG	5 cut(s)	226, 320, 549, 790, 847
MteI	GCGCNGCGC	1 cut(s)	128
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	3 cut(s)	320, 549, 847
MvnI	CGCG	3 cut(s)	99, 203, 308
MwoI	GCNNNNNNNGC	5 cut(s)	200, 358, 386, 680, 712
NciI	CCSGG	2 cut(s)	226, 790
NcoI	CCATGG	1 cut(s)	439
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	1 cut(s)	693
NlaIII	CATG	4 cut(s)	16, 443, 652, 694
NlaIV	GGNNCC	2 cut(s)	56, 223
NmuCI	GTSAC	2 cut(s)	541, 551
NsbI	TGCGCA	1 cut(s)	131
PaeR7I	CTCGAG	2 cut(s)	311, 332
PciSI	GCTCTTC	2 cut(s)	152, 278
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 186, 261
PdmI	GAANNNNTTC	2 cut(s)	245, 784
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	9 cut(s)	129, 164, 202, 205, 363, 382, 407, 673, 714
PleI	GAGTC	2 cut(s)	107, 625
PpsI	GAGTC	2 cut(s)	107, 625
Ppu21I	YACGTR	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	318, 547, 845
PspGI	CCWGG	3 cut(s)	318, 547, 845
PspN4I	GGNNCC	2 cut(s)	56, 223
PspPI	GGNCC	5 cut(s)	55, 222, 303, 325, 533
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	745
PsyI	GACNNNGTC	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	152, 278
SaqAI	TTAA	4 cut(s)	272, 636, 726, 853
SatI	GCNGC	9 cut(s)	128, 163, 201, 204, 362, 381, 406, 672, 713
Sau3AI	GATC	1 cut(s)	693
Sau96I	GGNCC	5 cut(s)	55, 222, 303, 325, 533
SchI	GAGTC	2 cut(s)	107, 625
ScrFI	CCNGG	5 cut(s)	226, 320, 549, 790, 847
SfaNI	GCATC	4 cut(s)	367, 487, 732, 742
Sfr274I	CTCGAG	2 cut(s)	311, 332
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SinI	GGWCC	4 cut(s)	55, 303, 325, 533
SlaI	CTCGAG	2 cut(s)	311, 332
SmlI	CTYRAG	3 cut(s)	311, 332, 635
SmoI	CTYRAG	3 cut(s)	311, 332, 635
Sse9I	AATT	2 cut(s)	384, 616
SsiI	CCGC	8 cut(s)	97, 162, 201, 203, 206, 306, 406, 737
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	3 cut(s)	251, 416, 777
StyD4I	CCNGG	5 cut(s)	224, 318, 547, 788, 845
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	182, 349
TaiI	ACGT	2 cut(s)	177, 765
TaqI	TCGA	6 cut(s)	21, 30, 111, 255, 312, 333
TasI	AATT	2 cut(s)	384, 616
TauI	GCSGC	4 cut(s)	165, 203, 206, 408
Tru1I	TTAA	4 cut(s)	272, 636, 726, 853
Tru9I	TTAA	4 cut(s)	272, 636, 726, 853
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	541, 551
TseI	GCWGC	5 cut(s)	127, 361, 380, 671, 712
Tsp45I	GTSAC	2 cut(s)	541, 551
TspDTI	ATGAA	3 cut(s)	17, 608, 795
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	635
VpaK11BI	GGWCC	4 cut(s)	55, 303, 325, 533
XapI	RAATTY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XhoI	CTCGAG	2 cut(s)	311, 332
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	2 cut(s)	245, 784
XspI	CTAG	3 cut(s)	251, 416, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.