Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033842.1

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

935 .. 1333

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgaaatgggacatggaaatcgaggaaatcgaggccgtgctggagaagatttgggacctccacgataagctcagcgacgccatccactccatttcccgcgctcacttcctcgactccgtcaaggcgctgcgcaactcgtcggagaagaagaagaagagcggcctccaccacgtctacggtggaaacgacgccgtcgcggcggcggaggagaaaggggccgggttcgtgttcgtgaaggacttccgagtcgagcaggacgatgagttaagggaggcgaagagcctcaatgctataaggaccgcgctcgagaacctggaggaccagctcgagtttttccatgtgagtgagttttatggctttgctagggtttcgttttggtgttcgaatttgaagatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.17

Weight (kDa)

5.35

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc16I	TGCGCA	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	3 cut(s)	99, 197, 302
AciI	CCGC	6 cut(s)	97, 159, 197, 200, 203, 300
AcsI	RAATTY	1 cut(s)	385
AcyI	GRCGYC	2 cut(s)	78, 189
AgsI	TTSAA	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	70, 325
AluI	AGCT	2 cut(s)	70, 325
Ama87I	CYCGRG	2 cut(s)	305, 326
AoxI	GGCC	3 cut(s)	33, 160, 216
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	4 cut(s)	101, 127, 132, 304
AspS9I	GGNCC	4 cut(s)	55, 216, 297, 319
AsuC2I	CCSGG	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	383
AvaI	CYCGRG	2 cut(s)	305, 326
AvaII	GGWCC	3 cut(s)	55, 297, 319
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	20, 176
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	4 cut(s)	128, 160, 198, 201
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	4 cut(s)	129, 161, 199, 202
Bme1390I	CCNGG	2 cut(s)	220, 314
Bme18I	GGWCC	3 cut(s)	55, 297, 319
BmeT110I	CYCGRG	2 cut(s)	305, 326
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	4 cut(s)	55, 216, 297, 319
BmiI	GGNNCC	2 cut(s)	56, 217
BmrFI	CCNGG	2 cut(s)	220, 314
BpmI	CTGGAG	2 cut(s)	62, 335
Bpu1102I	GCTNAGC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	2 cut(s)	78, 189
BseBI	CCWGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	114
Bsh1236I	CGCG	3 cut(s)	99, 197, 302
BshFI	GGCC	3 cut(s)	35, 162, 218
BsiHKCI	CYCGRG	2 cut(s)	305, 326
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	23, 68
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	3 cut(s)	35, 162, 218
BsoBI	CYCGRG	2 cut(s)	305, 326
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	6 cut(s)	97, 159, 197, 200, 203, 300
BspANI	GGCC	3 cut(s)	35, 162, 218
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	3 cut(s)	99, 197, 302
BspLI	GGNNCC	2 cut(s)	56, 217
BspQI	GCTCTTC	2 cut(s)	149, 272
BspT104I	TTCGAA	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	159
BssNI	GRCGYC	2 cut(s)	78, 189
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	149, 272
BstACI	GRCGYC	2 cut(s)	78, 189
BstBI	TTCGAA	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	99, 197, 302
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	101, 127, 132, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	218, 312
BstUI	CGCG	3 cut(s)	99, 197, 302
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	35, 162, 218
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	81
CfoI	GCGC	4 cut(s)	101, 127, 132, 304
Cfr13I	GGNCC	4 cut(s)	55, 216, 297, 319
CseI	GACGC	2 cut(s)	86, 197
CviAII	CATG	2 cut(s)	13, 338
CviJI	RGCY	7 cut(s)	35, 70, 162, 218, 282, 325, 357
CviKI_1	RGCY	7 cut(s)	35, 70, 162, 218, 282, 325, 357
DdeI	CTNAG	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	149, 272
EarI	CTCTTC	2 cut(s)	149, 272
EciI	GGCGGA	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	55, 297, 319
Eco88I	CYCGRG	2 cut(s)	305, 326
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	16, 341
FaiI	YATR	4 cut(s)	14, 293, 339, 354
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	2 cut(s)	12, 337
FauI	CCCGC	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	128, 160, 198, 201
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	128, 160, 198, 201
FspBI	CTAG	1 cut(s)	363
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	4 cut(s)	100, 126, 131, 303
GluI	GCNGC	4 cut(s)	128, 160, 198, 201
GsuI	CTGGAG	2 cut(s)	62, 335
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	35, 162, 218
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	86, 197
HhaI	GCGC	4 cut(s)	101, 127, 132, 304
Hin1I	GRCGYC	2 cut(s)	78, 189
Hin1II	CATG	2 cut(s)	16, 341
Hin6I	GCGC	4 cut(s)	99, 125, 130, 302
HinP1I	GCGC	4 cut(s)	99, 125, 130, 302
HinfI	GANTC	2 cut(s)	113, 246
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	142, 245
Hpy188III	TCNNGA	2 cut(s)	232, 307
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	4 cut(s)	80, 142, 191, 197
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	78, 189
Hsp92II	CATG	2 cut(s)	16, 341
HspAI	GCGC	4 cut(s)	99, 125, 130, 302
LguI	GCTCTTC	2 cut(s)	149, 272
LpnPI	CCDG	6 cut(s)	26, 232, 239, 299, 326, 335
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	171
MbiI	CCGCTC	1 cut(s)	159
MboII	GAAGA	6 cut(s)	58, 157, 160, 163, 166, 289
MluCI	AATT	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	107, 255
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	9 cut(s)	16, 25, 68, 119, 173, 199, 265, 293, 310
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	266, 397
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	220, 314
MteI	GCGCNGCGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	3 cut(s)	99, 197, 302
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	220
NlaIII	CATG	2 cut(s)	16, 341
NlaIV	GGNNCC	2 cut(s)	56, 217
NsbI	TGCGCA	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	383
PaeR7I	CTCGAG	2 cut(s)	305, 326
PciSI	GCTCTTC	2 cut(s)	149, 272
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 183, 255
PdmI	GAANNNNTTC	1 cut(s)	239
PflFI	GACNNNGTC	2 cut(s)	116, 191
PkrI	GCNGC	4 cut(s)	129, 161, 199, 202
PleI	GAGTC	2 cut(s)	107, 254
PpsI	GAGTC	2 cut(s)	107, 254
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	56, 217
PspPI	GGNCC	4 cut(s)	55, 216, 297, 319
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	326
PsyI	GACNNNGTC	2 cut(s)	116, 191
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	2 cut(s)	149, 272
SaqAI	TTAA	2 cut(s)	266, 397
SatI	GCNGC	4 cut(s)	128, 160, 198, 201
Sau96I	GGNCC	4 cut(s)	55, 216, 297, 319
SchI	GAGTC	2 cut(s)	107, 255
ScrFI	CCNGG	2 cut(s)	220, 314
SetI	ASST	5 cut(s)	60, 72, 174, 315, 327
Sfr274I	CTCGAG	2 cut(s)	305, 326
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	3 cut(s)	55, 297, 319
SlaI	CTCGAG	2 cut(s)	305, 326
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	305, 326
SmoI	CTYRAG	2 cut(s)	305, 326
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	6 cut(s)	97, 159, 197, 200, 203, 300
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	218, 312
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	7 cut(s)	21, 30, 111, 249, 306, 327, 383
TasI	AATT	1 cut(s)	385
TauI	GCSGC	3 cut(s)	162, 200, 203
Tru1I	TTAA	2 cut(s)	266, 397
Tru9I	TTAA	2 cut(s)	266, 397
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	106
Tth111I	GACNNNGTC	2 cut(s)	116, 191
VpaK11BI	GGWCC	3 cut(s)	55, 297, 319
XapI	RAATTY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	2 cut(s)	305, 326
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.