Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Forward (+)

2459157 .. 2461169

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAATGGGACATGGAAATCGAGGAAATCGAGGCCGTGCTGGAGAAGATTTGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGCGCTCACTTCCTCAACTCCGTCAAGGCGCTACGCAACTCGCCGGAGAAGAAGAAGAAGAGCGGCCTCCACCACGTCTACGGTGGAAACGACGCCGTCTCGGCGGTGGAGGAGAAAGGGGCCGGGTTCGTGTTCGTGAAGGACTTCCGAGTCGAGCAGGACGATGAGTTAAGGGAGGCGAAGAGCCTCAATGCTATAAGGACCGCGCTCGAGAACCTGGAGGACCAGCTCGAGTTTTTCCATGTGAAGATGAAAGCTTATGATCTATGGTTCAGTGCAAATAGCTTTATTTGTGTCAATAGGGATGTGTTTCAACGGTGGCTAGGTTCTGGTTCTGAGTTTGGATTAGTTGATCAGGTTCAGCAGCGGGCTGAGAGAGATGCTGCAATTGCACGCTTGGAGCAAAGCCGCATTGTTCTAGCACTAAGATTGTCTGAACACCATGGTAAGAAATACAAGGTTATTGAAGAAGCCCTCGCCTTTGTTGGAGATGTCTGTGATGCAAATGGCTTTGTTTCTCCCGAAAATCTCTATGGTCCTCCAGTCACTCCTGGTGACAACTTGGCAAACTCTGAAGGGAAGTCTAATATTATAATGAAAGTTCTTGTTTCAAGTGTAAATTTTGCCAAGAAGACTCTTAAGTTGGATAACATGGGTGGACTACTGGGAAATGCTGCTTTGGTGGCAGTCAGCATGATCGCATTGGTGCATATGCAGCAGGTAGCAGTTAAGGAGCATCCGCAGATGCTGGAAGATAAAATCTATGTGAACAGGAGTGCTAGAAAAACTTCCCGGATGGAGGGGGCTTCATCTACTGGTCGTCTCAGCAACTTGGATGTGCTATTAGCCAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.35

Weight (kDa)

6.38

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	99, 302
AciI	CCGC	7 cut(s)	97, 159, 200, 300, 463, 505, 836
AcsI	RAATTY	1 cut(s)	715
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	2 cut(s)	78, 189
AfiI	CCNNNNNNNGG	1 cut(s)	895
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	3 cut(s)	410, 563, 708
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	312, 646, 944
AluBI	AGCT	4 cut(s)	70, 325, 353, 381
AluI	AGCT	4 cut(s)	70, 325, 353, 381
Alw26I	GTCTC	2 cut(s)	199, 923
AlwNI	CAGNNNCTG	1 cut(s)	844
Ama87I	CYCGRG	2 cut(s)	305, 326
AoxI	GGCC	3 cut(s)	33, 160, 216
ApeKI	GCWGC	4 cut(s)	460, 479, 770, 811
ApoI	RAATTY	1 cut(s)	715
Asp700I	GAANNNNTTC	2 cut(s)	239, 883
AspLEI	GCGC	3 cut(s)	101, 127, 304
AspS9I	GGNCC	5 cut(s)	55, 216, 297, 319, 632
AsuC2I	CCSGG	2 cut(s)	220, 889
AsuHPI	GGTGA	1 cut(s)	662
AvaI	CYCGRG	2 cut(s)	305, 326
AvaII	GGWCC	4 cut(s)	55, 297, 319, 632
BbsI	GAAGAC	1 cut(s)	734
BbvI	GCAGC	4 cut(s)	466, 472, 757, 823
BccI	CCATC	2 cut(s)	89, 886
BceAI	ACGGC	2 cut(s)	20, 176
BciT130I	CCWGG	3 cut(s)	314, 648, 946
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	220, 889
BcoDI	GTCTC	2 cut(s)	199, 923
BfaI	CTAG	3 cut(s)	419, 515, 876
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	805
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	6 cut(s)	160, 461, 480, 505, 771, 812
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	6 cut(s)	161, 462, 481, 506, 772, 813
Bme1390I	CCNGG	5 cut(s)	220, 314, 648, 889, 946
Bme18I	GGWCC	4 cut(s)	55, 297, 319, 632
BmeT110I	CYCGRG	2 cut(s)	305, 326
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	55, 216, 297, 319, 632
BmiI	GGNNCC	2 cut(s)	56, 217
BmrFI	CCNGG	5 cut(s)	220, 314, 648, 889, 946
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	4 cut(s)	466, 586, 831, 841
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	734
BpmI	CTGGAG	3 cut(s)	62, 335, 621
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	220, 889
BsaHI	GRCGYC	2 cut(s)	78, 189
BsaJI	CCNNGG	2 cut(s)	538, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse1I	ACTGG	3 cut(s)	638, 765, 916
BseBI	CCWGG	3 cut(s)	314, 648, 946
BseDI	CCNNGG	2 cut(s)	538, 945
BseGI	GGATG	5 cut(s)	81, 406, 832, 897, 937
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMII	CTCAG	4 cut(s)	85, 423, 459, 934
BseNI	ACTGG	3 cut(s)	638, 765, 916
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	466, 472, 757, 823
Bsh1236I	CGCG	2 cut(s)	99, 302
BshFI	GGCC	3 cut(s)	35, 162, 218
BsiHKCI	CYCGRG	2 cut(s)	305, 326
BsiSI	CCGG	3 cut(s)	140, 219, 889
BslFI	GGGAC	2 cut(s)	23, 68
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	2 cut(s)	199, 923
BsmBI	CGTCTC	2 cut(s)	199, 923
BsmFI	GGGAC	2 cut(s)	23, 68
BsnI	GGCC	3 cut(s)	35, 162, 218
BsoBI	CYCGRG	2 cut(s)	305, 326
Bsp143I	GATC	3 cut(s)	358, 448, 792
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	7 cut(s)	97, 159, 200, 300, 463, 505, 836
BspANI	GGCC	3 cut(s)	35, 162, 218
BspCNI	CTCAG	4 cut(s)	84, 424, 460, 933
BspFNI	CGCG	2 cut(s)	99, 302
BspLI	GGNNCC	2 cut(s)	56, 217
BspMI	ACCTGC	1 cut(s)	805
BspQI	GCTCTTC	2 cut(s)	149, 272
BspTI	CTTAAG	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	638, 765, 916
BssECI	CCNNGG	2 cut(s)	538, 945
BssMI	GATC	3 cut(s)	358, 448, 792
BssNI	GRCGYC	2 cut(s)	78, 189
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	3 cut(s)	314, 648, 946
Bst4CI	ACNGT	2 cut(s)	179, 414
Bst6I	CTCTTC	2 cut(s)	149, 272
BstACI	GRCGYC	2 cut(s)	78, 189
BstAFI	CTTAAG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	465, 490
BstDEI	CTNAG	5 cut(s)	71, 432, 468, 521, 920
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	5 cut(s)	81, 406, 832, 897, 937
BstFNI	CGCG	2 cut(s)	99, 302
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	3 cut(s)	101, 127, 304
BstKTI	GATC	3 cut(s)	361, 451, 795
BstMAI	GTCTC	2 cut(s)	199, 923
BstMBI	GATC	3 cut(s)	358, 448, 792
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 485, 779, 811
BstNI	CCWGG	3 cut(s)	314, 648, 946
BstSCI	CCNGG	5 cut(s)	218, 312, 646, 887, 944
BstUI	CGCG	2 cut(s)	99, 302
BstV1I	GCAGC	4 cut(s)	466, 472, 757, 823
BstV2I	GAAGAC	1 cut(s)	734
BsuRI	GGCC	3 cut(s)	35, 162, 218
BtgI	CCRYGG	1 cut(s)	538
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	81, 406, 832, 897, 937
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	2 cut(s)	465, 490
CaiI	CAGNNNCTG	1 cut(s)	844
CfoI	GCGC	3 cut(s)	101, 127, 304
Cfr13I	GGNCC	5 cut(s)	55, 216, 297, 319, 632
CseI	GACGC	2 cut(s)	86, 197
CviAII	CATG	5 cut(s)	13, 338, 539, 748, 790
DdeI	CTNAG	5 cut(s)	71, 432, 468, 521, 920
DpnI	GATC	3 cut(s)	360, 450, 794
DpnII	GATC	3 cut(s)	358, 448, 792
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	149, 272
EarI	CTCTTC	2 cut(s)	149, 272
Eco130I	CCWWGG	1 cut(s)	538
Eco47I	GGWCC	4 cut(s)	55, 297, 319, 632
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	2 cut(s)	305, 326
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	312, 646, 944
EcoT14I	CCWWGG	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	2 cut(s)	199, 923
FaeI	CATG	5 cut(s)	16, 341, 542, 751, 793
FaqI	GGGAC	2 cut(s)	23, 68
FatI	CATG	5 cut(s)	12, 337, 538, 747, 789
FauI	CCCGC	2 cut(s)	104, 456
FauNDI	CATATG	1 cut(s)	807
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	160, 461, 480, 505, 771, 812
FokI	GGATG	5 cut(s)	68, 413, 819, 904, 944
Fsp4HI	GCNGC	6 cut(s)	160, 461, 480, 505, 771, 812
FspBI	CTAG	3 cut(s)	419, 515, 876
GlaI	GCGC	3 cut(s)	100, 126, 303
GluI	GCNGC	6 cut(s)	160, 461, 480, 505, 771, 812
GsuI	CTGGAG	3 cut(s)	62, 335, 621
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	35, 162, 218
HapII	CCGG	3 cut(s)	140, 219, 889
HgaI	GACGC	2 cut(s)	86, 197
HhaI	GCGC	3 cut(s)	101, 127, 304
Hin1I	GRCGYC	2 cut(s)	78, 189
Hin1II	CATG	5 cut(s)	16, 341, 542, 751, 793
Hin6I	GCGC	3 cut(s)	99, 125, 302
HinP1I	GCGC	3 cut(s)	99, 125, 302
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	246, 730
HpaII	CCGG	3 cut(s)	140, 219, 889
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	3 cut(s)	175, 755, 865
Hpy188I	TCNGA	4 cut(s)	245, 433, 532, 670
Hpy188III	TCNNGA	3 cut(s)	232, 307, 617
Hpy8I	GTNNAC	3 cut(s)	175, 755, 865
Hpy99I	CGWCG	2 cut(s)	80, 191
HpyAV	CCTTC	2 cut(s)	229, 665
HpyCH4III	ACNGT	2 cut(s)	179, 414
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	6 cut(s)	374, 482, 488, 599, 805, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 485, 779, 811
HpyF3I	CTNAG	5 cut(s)	71, 432, 468, 521, 920
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	78, 189
Hsp92II	CATG	5 cut(s)	16, 341, 542, 751, 793
HspAI	GCGC	3 cut(s)	99, 125, 302
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	358, 448, 792
LguI	GCTCTTC	2 cut(s)	149, 272
LmnI	GCTCC	2 cut(s)	496, 829
Lsp1109I	GCAGC	4 cut(s)	466, 472, 757, 823
LweI	GCATC	4 cut(s)	466, 586, 831, 841
MaeI	CTAG	3 cut(s)	419, 515, 876
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	640, 650
MalI	GATC	3 cut(s)	360, 450, 794
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	3 cut(s)	358, 448, 792
MfeI	CAATTG	1 cut(s)	483
MluCI	AATT	2 cut(s)	483, 715
MlyI	GAGTC	2 cut(s)	255, 724
MmeI	TCCRAC	2 cut(s)	562, 720
MroXI	GAANNNNTTC	2 cut(s)	239, 883
MseI	TTAA	4 cut(s)	266, 735, 825, 952
MspA1I	CMGCKG	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	3 cut(s)	140, 219, 889
MspR9I	CCNGG	5 cut(s)	220, 314, 648, 889, 946
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	3 cut(s)	314, 648, 946
MvnI	CGCG	2 cut(s)	99, 302
MwoI	GCNNNNNNNGC	4 cut(s)	197, 485, 779, 811
NciI	CCSGG	2 cut(s)	220, 889
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	3 cut(s)	358, 448, 792
NlaIII	CATG	5 cut(s)	16, 341, 542, 751, 793
NlaIV	GGNNCC	2 cut(s)	56, 217
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	640, 650
PaeR7I	CTCGAG	2 cut(s)	305, 326
PciSI	GCTCTTC	2 cut(s)	149, 272
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 183, 255
PdmI	GAANNNNTTC	2 cut(s)	239, 883
PflFI	GACNNNGTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	887
PkrI	GCNGC	6 cut(s)	161, 462, 481, 506, 772, 813
PleI	GAGTC	2 cut(s)	254, 724
PpsI	GAGTC	2 cut(s)	254, 724
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	312, 646, 944
PspGI	CCWGG	3 cut(s)	312, 646, 944
PspN4I	GGNNCC	2 cut(s)	56, 217
PspPI	GGNCC	5 cut(s)	55, 216, 297, 319, 632
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	844
PsyI	GACNNNGTC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	149, 272
SaqAI	TTAA	4 cut(s)	266, 735, 825, 952
SatI	GCNGC	6 cut(s)	160, 461, 480, 505, 771, 812
Sau3AI	GATC	3 cut(s)	358, 448, 792
Sau96I	GGNCC	5 cut(s)	55, 216, 297, 319, 632
SchI	GAGTC	2 cut(s)	255, 724
ScrFI	CCNGG	5 cut(s)	220, 314, 648, 889, 946
SfaNI	GCATC	4 cut(s)	466, 586, 831, 841
Sfr274I	CTCGAG	2 cut(s)	305, 326
SinI	GGWCC	4 cut(s)	55, 297, 319, 632
SlaI	CTCGAG	2 cut(s)	305, 326
SmlI	CTYRAG	3 cut(s)	305, 326, 734
SmoI	CTYRAG	3 cut(s)	305, 326, 734
Sse9I	AATT	2 cut(s)	483, 715
SsiI	CCGC	7 cut(s)	97, 159, 200, 300, 463, 505, 836
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	3 cut(s)	419, 515, 876
StyD4I	CCNGG	5 cut(s)	218, 312, 646, 887, 944
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	179, 414
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	5 cut(s)	21, 30, 249, 306, 327
TasI	AATT	2 cut(s)	483, 715
TauI	GCSGC	2 cut(s)	162, 507
Tru1I	TTAA	4 cut(s)	266, 735, 825, 952
Tru9I	TTAA	4 cut(s)	266, 735, 825, 952
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	640, 650
TseI	GCWGC	4 cut(s)	460, 479, 770, 811
Tsp45I	GTSAC	2 cut(s)	640, 650
TspDTI	ATGAA	4 cut(s)	17, 362, 707, 894
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	4 cut(s)	55, 297, 319, 632
XapI	RAATTY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	2 cut(s)	305, 326
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	239, 883
XspI	CTAG	3 cut(s)	419, 515, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.