Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

26022685 .. 26024359

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAATGGGACATGGAAGTCGAAGAGATCGAGGCAGTCCTCGAGAAGATATGGGACCTCCACGATAAGCTCAGCGACGCCATCCACTCCATTTCCCGAGCTCACTTCCTCAACTCCGTCAAGTCCCTCAGAAGTTCCGGTAAGAAGAAGCCACAGCAGCAACCCAATGACGACGCCGCCGACGAGAACCGGGCCGGCTACGTGTACTTGAAGGACTTCCGGGTCGAACACGACGATGACTCGGCGATTCGGGAGGCCAAGAGCCTCAATGCGATTCGCACCGCGCTCGAGAACCTCGAGGACCAGCTCGAGTTTTTCCATACTGTGCAGGTGCAGCAGCGGGCTGAGAGAGATGCTGCGATTGCACGCTTGGAGCAGAGCCGTATTGTTCTAGCAATGAGATTGTCTGAACACCATGGTAAGAAGTACCAAGTTATTGAGGAAGCTCTTGCCTTTGTTGGAGATGTCTGTGATGCAAGCCGTTTAGTTTCTCCTGAAAGTCTTTACGGTCCTCCGATCGGTCCTTCTGGTGAGAAGTTGGTGGCCTCTGAAGGGAAGAAGTCTAACATTTTGATCAAATTTCTCATTTCAAGTATCAATTTTGCTAAAAGAACGCTTAAATTGGATAATACGGGTGGAATACTTGGAAATGCTGCATTGGTGGCATTTAGCATGATTGCATTGGTGCATCTGAATCAAGTAGGTATTAAGGAGCATCCACAGAAGCTGGAAGATAAAATCCACATCAACAGAAATGCTAGAAAAACTTCACCGTCTATTGGTCGCTACAGCAACTTGGATGTTCTATTAGCCAGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.57

Weight (kDa)

6.81

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
AasI	GACNNNNNNGTC	2 cut(s)	17, 221
AbsI	CCTCGAGG	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	284
AciI	CCGC	3 cut(s)	177, 282, 340
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	570
AcyI	GRCGYC	2 cut(s)	78, 174
AfaI	GTAC	2 cut(s)	206, 428
AfiI	CCNNNNNNNGG	3 cut(s)	518, 552, 779
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	211, 591
AjnI	CCWGG	1 cut(s)	812
AluBI	AGCT	5 cut(s)	70, 101, 307, 446, 727
AluI	AGCT	5 cut(s)	70, 101, 307, 446, 727
Alw21I	GWGCWC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
AoxI	GGCC	3 cut(s)	192, 255, 543
ApeKI	GCWGC	5 cut(s)	157, 334, 337, 356, 653
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	2 cut(s)	215, 766
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	5 cut(s)	55, 192, 301, 509, 521
AsuC2I	CCSGG	2 cut(s)	191, 221
AsuHPI	GGTGA	2 cut(s)	542, 762
AvaI	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
AvaII	GGWCC	4 cut(s)	55, 301, 509, 521
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	169, 343, 346, 349, 640
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	366, 465
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	814
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	191, 221
BfaI	CTAG	2 cut(s)	392, 759
BfmI	CTRYAG	1 cut(s)	787
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	158, 177, 335, 338, 357, 654
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	6 cut(s)	159, 178, 336, 339, 358, 655
Bme1390I	CCNGG	3 cut(s)	191, 221, 814
Bme18I	GGWCC	4 cut(s)	55, 301, 509, 521
BmeT110I	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
BmgT120I	GGNCC	5 cut(s)	55, 192, 301, 509, 521
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	191, 221, 814
BmsI	GCATC	4 cut(s)	343, 463, 697, 724
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	191, 221
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	78, 174
BsaJI	CCNNGG	2 cut(s)	415, 813
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 552, 779
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	814
BseDI	CCNNGG	2 cut(s)	415, 813
BseGI	GGATG	3 cut(s)	81, 715, 805
BseLI	CCNNNNNNNGG	3 cut(s)	518, 552, 779
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	85, 142, 336
BseXI	GCAGC	5 cut(s)	169, 343, 346, 349, 640
BsgI	GTGCAG	2 cut(s)	347, 353
Bsh1236I	CGCG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	194, 257, 545
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
BsiSI	CCGG	4 cut(s)	138, 190, 195, 220
BslFI	GGGAC	3 cut(s)	23, 68, 109
BslI	CCNNNNNNNGG	3 cut(s)	518, 552, 779
BsmFI	GGGAC	3 cut(s)	23, 68, 109
BsnI	GGCC	3 cut(s)	194, 257, 545
BsoBI	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	27, 516, 573
Bsp1720I	GCTNAGC	1 cut(s)	71
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	3 cut(s)	177, 282, 340
BspANI	GGCC	3 cut(s)	194, 257, 545
BspCNI	CTCAG	3 cut(s)	84, 141, 337
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	415, 813
BssMI	GATC	3 cut(s)	27, 516, 573
BssNI	GRCGYC	2 cut(s)	78, 174
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	814
Bst4CI	ACNGT	3 cut(s)	325, 509, 774
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	78, 174
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	196, 342, 367, 478
BstDEI	CTNAG	3 cut(s)	71, 128, 345
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	3 cut(s)	81, 715, 805
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	30, 519, 576
BstMBI	GATC	3 cut(s)	27, 516, 573
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 334, 362, 662
BstNI	CCWGG	1 cut(s)	814
BstSCI	CCNGG	3 cut(s)	189, 219, 812
BstSFI	CTRYAG	1 cut(s)	787
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	5 cut(s)	169, 343, 346, 349, 640
BsuRI	GGCC	3 cut(s)	194, 257, 545
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	81, 715, 805
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	4 cut(s)	196, 342, 367, 478
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	5 cut(s)	55, 192, 301, 509, 521
CseI	GACGC	2 cut(s)	86, 182
Csp6I	GTAC	2 cut(s)	205, 427
CviAII	CATG	3 cut(s)	13, 416, 673
CviQI	GTAC	2 cut(s)	205, 427
DdeI	CTNAG	3 cut(s)	71, 128, 345
DpnI	GATC	3 cut(s)	29, 518, 575
DpnII	GATC	3 cut(s)	27, 516, 573
DrdI	GACNNNNNNGTC	2 cut(s)	17, 221
DseDI	GACNNNNNNGTC	2 cut(s)	17, 221
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	55, 301, 509, 521
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	5 cut(s)	41, 96, 287, 296, 308
EcoICRI	GAGCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	16, 419, 676
FaiI	YATR	5 cut(s)	14, 52, 321, 417, 674
FaqI	GGGAC	3 cut(s)	23, 68, 109
FatI	CATG	3 cut(s)	12, 415, 672
FauI	CCCGC	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	158, 177, 335, 338, 357, 654
FokI	GGATG	3 cut(s)	68, 702, 812
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	6 cut(s)	158, 177, 335, 338, 357, 654
FspBI	CTAG	2 cut(s)	392, 759
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	6 cut(s)	158, 177, 335, 338, 357, 654
HaeIII	GGCC	3 cut(s)	194, 257, 545
HapII	CCGG	4 cut(s)	138, 190, 195, 220
HgaI	GACGC	2 cut(s)	86, 182
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	2 cut(s)	78, 174
Hin1II	CATG	3 cut(s)	16, 419, 676
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	4 cut(s)	239, 247, 274, 694
HpaII	CCGG	4 cut(s)	138, 190, 195, 220
HphI	GGTGA	2 cut(s)	542, 762
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	131, 409, 516, 550, 693
Hpy188III	TCNNGA	5 cut(s)	43, 96, 251, 289, 494
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	4 cut(s)	80, 176, 185, 236
HpyAV	CCTTC	3 cut(s)	205, 534, 545
HpyCH4III	ACNGT	3 cut(s)	325, 509, 774
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	7 cut(s)	328, 334, 365, 476, 656, 680, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 334, 362, 662
HpyF3I	CTNAG	3 cut(s)	71, 128, 345
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	2 cut(s)	78, 174
Hsp92II	CATG	3 cut(s)	16, 419, 676
HspAI	GCGC	1 cut(s)	284
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	27, 516, 573
LmnI	GCTCC	2 cut(s)	373, 712
Lsp1109I	GCAGC	5 cut(s)	169, 343, 346, 349, 640
LweI	GCATC	4 cut(s)	343, 463, 697, 724
MaeI	CTAG	2 cut(s)	392, 759
MaeII	ACGT	1 cut(s)	201
MalI	GATC	3 cut(s)	29, 518, 575
MboI	GATC	3 cut(s)	27, 516, 573
MboII	GAAGA	5 cut(s)	35, 58, 157, 568, 743
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	578, 598, 620
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	439
MroNI	GCCGGC	1 cut(s)	194
MroXI	GAANNNNTTC	2 cut(s)	215, 766
MseI	TTAA	2 cut(s)	618, 708
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	4 cut(s)	138, 190, 195, 220
MspR9I	CCNGG	3 cut(s)	191, 221, 814
MvaI	CCWGG	1 cut(s)	814
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	157, 334, 362, 662
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	2 cut(s)	191, 221
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	27, 516, 573
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	16, 419, 676
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	221
PaeR7I	CTCGAG	4 cut(s)	41, 287, 296, 308
PaqCI	CACCTGC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	5 cut(s)	27, 177, 180, 231, 294
PdiI	GCCGGC	1 cut(s)	196
PdmI	GAANNNNTTC	2 cut(s)	215, 766
PfeI	GAWTC	3 cut(s)	247, 274, 694
PkrI	GCNGC	6 cut(s)	159, 178, 336, 339, 358, 655
Ple19I	CGATCG	1 cut(s)	519
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	812
PspGI	CCWGG	1 cut(s)	812
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	5 cut(s)	55, 192, 301, 509, 521
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	2 cut(s)	296, 308
PstNI	CAGNNNCTG	1 cut(s)	727
PvuI	CGATCG	1 cut(s)	519
RsaI	GTAC	2 cut(s)	206, 428
RsaNI	GTAC	2 cut(s)	205, 427
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	618, 708
SatI	GCNGC	6 cut(s)	158, 177, 335, 338, 357, 654
Sau3AI	GATC	3 cut(s)	27, 516, 573
Sau96I	GGNCC	5 cut(s)	55, 192, 301, 509, 521
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	191, 221, 814
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	4 cut(s)	343, 463, 697, 724
SfcI	CTRYAG	1 cut(s)	787
Sfr274I	CTCGAG	4 cut(s)	41, 287, 296, 308
SinI	GGWCC	4 cut(s)	55, 301, 509, 521
SlaI	CTCGAG	4 cut(s)	41, 287, 296, 308
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	4 cut(s)	41, 287, 296, 308
SmoI	CTYRAG	4 cut(s)	41, 287, 296, 308
Sse9I	AATT	3 cut(s)	578, 598, 620
SsiI	CCGC	3 cut(s)	177, 282, 340
SspMI	CTAG	2 cut(s)	392, 759
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	3 cut(s)	189, 219, 812
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	325, 509, 774
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	7 cut(s)	21, 30, 42, 225, 288, 297, 309
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	3 cut(s)	578, 598, 620
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	247, 274, 694
Tru1I	TTAA	2 cut(s)	618, 708
Tru9I	TTAA	2 cut(s)	618, 708
TseI	GCWGC	5 cut(s)	157, 334, 337, 356, 653
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	4 cut(s)	55, 301, 509, 521
XapI	RAATTY	1 cut(s)	578
XhoI	CTCGAG	4 cut(s)	41, 287, 296, 308
XmnI	GAANNNNTTC	2 cut(s)	215, 766
XspI	CTAG	2 cut(s)	392, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.