Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007933

Physical Location & Seq

Genomic Coordinates Reverse (-)

29178906 .. 29181126

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G306500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAATGGGACATGGAAATCGAAGATATTGAGGCGGTGCTCGAGAAGATTTGGGACCTGCACGATAAGATCAGCGACGCCATCCACTCAATTTCGAGAGCTCACTTCCTCAGCTCTGTCAATGCCCTGAGAAGTTCCGACAAGAAGAAGCCGCACACCAACGACGTCGCTGTTGATGAGAACCGAACCGGCTACGTCTACGTGAAGGACTTCCGACACGACCACGACGATGACTCGGTGATTCGGGAGGCCAAGAGCCTCAATGCGATTCGGACCGCGCTCGAGAACCTGGAGGACCAGCTCGAGTTTTTCCATTTGCATCGCTCAAAGGACGAAATACTCTGTTTCTGCAACTGCTGCGTGACTGTGCAGGTGCAGCAGCGGGCTGAGAGAGATGCTGCGATTGCACGGTTAGAGCAAAGCCGTATTGTTTTAGCAATGAGATTGTCTGAACACCATGGTAAGAAATACCAAGTTATTGAAGAAGCTCTTGCCTTTGTGGGAGATGTCTGTGATGCAAGTCGCTTCGTTTCACCTGAAAATCTTTATGGTCCTCCAATCAGTCCTGCTGAGAAATTGGAAGCCTGTGAAGGGAAGAGGTCAAATATTATAATCAAAGTTCTCATTTCAAGTATCAATTTTGCGAAGAAATCCCTTCAATTGGATAATATGGGTGGAATACTTGGCAACGCTGGTTTGGTGGCAGTTAGCATGATTGCATTGGTGCATCTGAATCAAGTAGCTATGAGGGAGCATCCACAGAAGCTGGAAGACAACAGAAATGCTAGAAAAACTTCCCGGGTAGAGGGGACTTCGTCGACCAGTCGTTTCAGCAACTTGGATGTGCTATTGGCTAGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

32.34

Weight (kDa)

6.19

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53280
fragaria_vesca	FvH4_7g30940
malus_domestica	MD01G1214600.v1.1 MD07G1284300.v1.1
prunus_persica	Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1 Prupe.2G306500_v2.0.a1
pyrus_communis	pycom01g22520 pycom07g25820
rosa_chinensis	RchiOBHm_Chr1g0380031
rosa_laevigata	RLG00000026339
rosa_multiflora	Rmu_co8102846.1_g000001 Rmu_sc0001232.1_g000001 Rmu_sc0004184.1_g000007 Rmu_sc0033842.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279780
rosa_rugosa	Rorug01G0416700 Rorug01G0416800
rosa_samantha	Rh1AG441300 Rh1BG396900 Rh1CG410200 Rh1DG427700
rosa_wichuraiana	Rw1G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AarI	CACCTGC	1 cut(s)	361
AatII	GACGTC	1 cut(s)	168
Acc36I	ACCTGC	2 cut(s)	66, 361
AccI	GTMKAC	2 cut(s)	198, 818
AccII	CGCG	1 cut(s)	278
AciI	CCGC	4 cut(s)	35, 152, 276, 382
AcyI	GRCGYC	2 cut(s)	78, 165
AfiI	CCNNNNNNNGG	3 cut(s)	591, 661, 805
AgsI	TTSAA	3 cut(s)	482, 630, 659
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	6 cut(s)	101, 114, 301, 488, 743, 766
AluI	AGCT	6 cut(s)	101, 114, 301, 488, 743, 766
Alw21I	GWGCWC	2 cut(s)	42, 103
AlwNI	CAGNNNCTG	1 cut(s)	766
Ama87I	CYCGRG	4 cut(s)	41, 281, 302, 798
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	4 cut(s)	357, 376, 379, 398
Asp700I	GAANNNNTTC	2 cut(s)	209, 793
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	4 cut(s)	55, 273, 295, 551
AsuC2I	CCSGG	2 cut(s)	799, 800
AsuHPI	GGTGA	2 cut(s)	250, 525
AvaI	CYCGRG	4 cut(s)	41, 281, 302, 798
AvaII	GGWCC	4 cut(s)	55, 273, 295, 551
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	42, 103
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	344, 385, 388, 391
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	2 cut(s)	799, 800
BfaI	CTAG	2 cut(s)	786, 855
BfuAI	ACCTGC	2 cut(s)	66, 361
BisI	GCNGC	5 cut(s)	152, 358, 377, 380, 399
BlsI	GCNGC	5 cut(s)	153, 359, 378, 381, 400
Bme1390I	CCNGG	3 cut(s)	290, 799, 800
Bme18I	GGWCC	4 cut(s)	55, 273, 295, 551
BmeT110I	CYCGRG	4 cut(s)	41, 281, 302, 798
BmgT120I	GGNCC	4 cut(s)	55, 273, 295, 551
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	290, 799, 800
BmsI	GCATC	5 cut(s)	328, 385, 505, 736, 763
BpiI	GAAGAC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	799, 800
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	78, 165
BsaJI	CCNNGG	2 cut(s)	457, 798
Bsc4I	CCNNNNNNNGG	3 cut(s)	591, 661, 805
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	457, 798
BseGI	GGATG	3 cut(s)	81, 754, 847
BseLI	CCNNNNNNNGG	3 cut(s)	591, 661, 805
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	4 cut(s)	119, 124, 378, 561
BseNI	ACTGG	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	344, 385, 388, 391
BsgI	GTGCAG	3 cut(s)	44, 389, 395
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	42, 103
BsiHKCI	CYCGRG	4 cut(s)	41, 281, 302, 798
BsiSI	CCGG	2 cut(s)	189, 799
BslFI	GGGAC	3 cut(s)	23, 68, 823
BslI	CCNNNNNNNGG	3 cut(s)	591, 661, 805
BsmFI	GGGAC	3 cut(s)	23, 68, 823
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	4 cut(s)	41, 281, 302, 798
Bsp1286I	GDGCHC	2 cut(s)	42, 103
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	4 cut(s)	35, 152, 276, 382
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	4 cut(s)	120, 123, 379, 562
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	2 cut(s)	66, 361
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	822
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	457, 798
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	2 cut(s)	78, 165
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	367, 411
Bst6I	CTCTTC	1 cut(s)	590
BstACI	GRCGYC	2 cut(s)	78, 165
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	110, 128, 387, 570
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	81, 754, 847
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 376, 404
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	288, 797, 798
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	344, 385, 388, 391
BstV2I	GAAGAC	1 cut(s)	777
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	457
BtgZI	GCGATG	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	81, 754, 847
BveI	ACCTGC	2 cut(s)	66, 361
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	766
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	4 cut(s)	55, 273, 295, 551
Cfr9I	CCCGGG	1 cut(s)	798
CpoI	CGGWCCG	1 cut(s)	273
CseI	GACGC	1 cut(s)	86
CspI	CGGWCCG	1 cut(s)	273
CviAII	CATG	3 cut(s)	13, 458, 712
DdeI	CTNAG	4 cut(s)	110, 128, 387, 570
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	55, 273, 295, 551
Eco53kI	GAGCTC	1 cut(s)	101
Eco88I	CYCGRG	4 cut(s)	41, 281, 302, 798
EcoICRI	GAGCTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	3 cut(s)	16, 461, 715
FaiI	YATR	7 cut(s)	14, 459, 549, 611, 671, 713, 746
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	3 cut(s)	23, 68, 823
FatI	CATG	3 cut(s)	12, 457, 711
FauI	CCCGC	1 cut(s)	375
FblI	GTMKAC	2 cut(s)	198, 818
Fnu4HI	GCNGC	5 cut(s)	152, 358, 377, 380, 399
FokI	GGATG	3 cut(s)	68, 741, 854
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	5 cut(s)	152, 358, 377, 380, 399
FspBI	CTAG	2 cut(s)	786, 855
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	5 cut(s)	152, 358, 377, 380, 399
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	189, 799
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	2 cut(s)	78, 165
Hin1II	CATG	3 cut(s)	16, 461, 715
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	4 cut(s)	233, 241, 268, 733
HpaII	CCGG	2 cut(s)	189, 799
HphI	GGTGA	2 cut(s)	250, 525
Hpy166II	GTNNAC	2 cut(s)	199, 819
Hpy188I	TCNGA	5 cut(s)	139, 215, 273, 451, 732
Hpy188III	TCNNGA	4 cut(s)	43, 96, 245, 283
Hpy8I	GTNNAC	2 cut(s)	199, 819
Hpy99I	CGWCG	5 cut(s)	80, 167, 170, 230, 820
HpyAV	CCTTC	3 cut(s)	199, 584, 665
HpyCH4III	ACNGT	2 cut(s)	367, 411
HpyCH4IV	ACGT	3 cut(s)	165, 195, 201
HpyCH4V	TGCA	9 cut(s)	61, 319, 351, 370, 376, 407, 518, 719, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 376, 404
HpyF3I	CTNAG	4 cut(s)	110, 128, 387, 570
HpySE526I	ACGT	3 cut(s)	165, 195, 201
Hsp92I	GRCGYC	2 cut(s)	78, 165
Hsp92II	CATG	3 cut(s)	16, 461, 715
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	4 cut(s)	344, 385, 388, 391
LweI	GCATC	5 cut(s)	328, 385, 505, 736, 763
MaeI	CTAG	2 cut(s)	786, 855
MaeII	ACGT	3 cut(s)	165, 195, 201
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	7 cut(s)	35, 58, 157, 494, 607, 658, 782
MfeI	CAATTG	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	42, 103
MluCI	AATT	4 cut(s)	90, 575, 637, 659
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	162, 238
MnlI	CCTC	9 cut(s)	25, 119, 241, 269, 286, 564, 591, 741, 799
MroXI	GAANNNNTTC	2 cut(s)	209, 793
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	2 cut(s)	189, 799
MspR9I	CCNGG	3 cut(s)	290, 799, 800
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	357, 376, 404
NciI	CCSGG	2 cut(s)	799, 800
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	16, 461, 715
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	361
PaeR7I	CTCGAG	3 cut(s)	41, 281, 302
PaqCI	CACCTGC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	209, 793
PfeI	GAWTC	3 cut(s)	241, 268, 733
PflFI	GACNNNGTC	1 cut(s)	814
PkrI	GCNGC	5 cut(s)	153, 359, 378, 381, 400
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	4 cut(s)	55, 273, 295, 551
PspPPI	RGGWCCY	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	766
PsyI	GACNNNGTC	1 cut(s)	814
RseI	CAYNNNNRTG	1 cut(s)	228
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	817
SatI	GCNGC	5 cut(s)	152, 358, 377, 380, 399
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	4 cut(s)	55, 273, 295, 551
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	290, 799, 800
SduI	GDGCHC	2 cut(s)	42, 103
SfaNI	GCATC	5 cut(s)	328, 385, 505, 736, 763
Sfr274I	CTCGAG	3 cut(s)	41, 281, 302
SinI	GGWCC	4 cut(s)	55, 273, 295, 551
SlaI	CTCGAG	3 cut(s)	41, 281, 302
SmaI	CCCGGG	1 cut(s)	800
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	3 cut(s)	41, 281, 302
SmoI	CTYRAG	3 cut(s)	41, 281, 302
Sse9I	AATT	4 cut(s)	90, 575, 637, 659
SsiI	CCGC	4 cut(s)	35, 152, 276, 382
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	786, 855
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	3 cut(s)	288, 797, 798
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	367, 411
TaiI	ACGT	3 cut(s)	168, 198, 204
TaqI	TCGA	6 cut(s)	21, 42, 95, 282, 303, 818
TasI	AATT	4 cut(s)	90, 575, 637, 659
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	241, 268, 733
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	357, 376, 379, 398
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	798
Tth111I	GACNNNGTC	1 cut(s)	814
VpaK11BI	GGWCC	4 cut(s)	55, 273, 295, 551
XhoI	CTCGAG	3 cut(s)	41, 281, 302
XmaI	CCCGGG	1 cut(s)	798
XmiI	GTMKAC	2 cut(s)	198, 818
XmnI	GAANNNNTTC	2 cut(s)	209, 793
XspI	CTAG	2 cut(s)	786, 855
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.