Domain of unknown function (DUF3444)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25560 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150 |
| fragaria_vesca | FvH4_7g31170 |
| malus_domestica | MD01G1216400.v1.1 MD07G1286200.v1.1 |
| prunus_persica | Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1 |
| pyrus_communis | pycom01g22710 pycom07g25950 |
| rosa_chinensis | RchiOBHm_Chr1g0380211 |
| rosa_laevigata | RLG00000026319 |
| rosa_multiflora | Rmu_sc0001232.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00279560 |
| rosa_rugosa | Rorug01G0419000 |
| rosa_samantha | Rh1AG443900 Rh1BG398900 Rh1CG412300 Rh1DG429500 |
| rosa_wichuraiana | Rw1G038550 Rw1G038620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 699 |
| AciI | CCGC | 8 cut(s) | 224, 601, 692, 699, 1089, 1788, 1889, 2223 |
| AclWI | GGATC | 4 cut(s) | 1415, 1455, 2051, 2064 |
| AcsI | RAATTY | 4 cut(s) | 502, 814, 1015, 1687 |
| AcuI | CTGAAG | 2 cut(s) | 311, 1295 |
| AcyI | GRCGYC | 1 cut(s) | 754 |
| AfaI | GTAC | 3 cut(s) | 19, 240, 1138 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 154, 433, 474, 475, 698, 1794, 2086 |
| AflIII | ACRYGT | 1 cut(s) | 656 |
| AhlI | ACTAGT | 1 cut(s) | 893 |
| AjnI | CCWGG | 7 cut(s) | 493, 556, 732, 1544, 1657, 1747, 1810 |
| AleI | CACNNNNGTG | 1 cut(s) | 1703 |
| Alw21I | GWGCWC | 2 cut(s) | 463, 1289 |
| Alw26I | GTCTC | 2 cut(s) | 406, 964 |
| AlwI | GGATC | 4 cut(s) | 1415, 1455, 2051, 2064 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 289, 686, 1295 |
| AoxI | GGCC | 3 cut(s) | 874, 1655, 2266 |
| ApaI | GGGCCC | 1 cut(s) | 878 |
| ApeKI | GCWGC | 4 cut(s) | 926, 929, 1487, 2063 |
| ApoI | RAATTY | 4 cut(s) | 502, 814, 1015, 1687 |
| AseI | ATTAAT | 1 cut(s) | 272 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1691 |
| AspA2I | CCTAGG | 1 cut(s) | 2269 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 6 cut(s) | 479, 582, 874, 875, 1785, 1936 |
| AsuC2I | CCSGG | 1 cut(s) | 1393 |
| AsuHPI | GGTGA | 7 cut(s) | 572, 1511, 1717, 1826, 2027, 2101, 2258 |
| AsuII | TTCGAA | 1 cut(s) | 1676 |
| AvaII | GGWCC | 4 cut(s) | 479, 582, 1785, 1936 |
| AvrII | CCTAGG | 1 cut(s) | 2269 |
| AxyI | CCTNAGG | 1 cut(s) | 24 |
| BaeGI | GKGCMC | 2 cut(s) | 653, 878 |
| BamHI | GGATCC | 1 cut(s) | 2056 |
| BanII | GRGCYC | 4 cut(s) | 463, 878, 1289, 1771 |
| BauI | CACGAG | 1 cut(s) | 1201 |
| Bbv12I | GWGCWC | 2 cut(s) | 463, 1289 |
| BbvI | GCAGC | 4 cut(s) | 913, 941, 1474, 2075 |
| BccI | CCATC | 4 cut(s) | 1490, 1496, 1831, 2191 |
| BciT130I | CCWGG | 7 cut(s) | 495, 558, 734, 1546, 1659, 1749, 1812 |
| BciVI | GTATCC | 1 cut(s) | 1064 |
| BcnI | CCSGG | 1 cut(s) | 1393 |
| BcoDI | GTCTC | 2 cut(s) | 406, 964 |
| BcuI | ACTAGT | 1 cut(s) | 893 |
| BfaI | CTAG | 8 cut(s) | 105, 717, 768, 894, 1176, 2177, 2261, 2270 |
| BfmI | CTRYAG | 3 cut(s) | 678, 927, 1092 |
| BfuI | GTATCC | 1 cut(s) | 1064 |
| BisI | GCNGC | 5 cut(s) | 601, 927, 930, 1488, 2064 |
| BlnI | CCTAGG | 1 cut(s) | 2269 |
| BlpI | GCTNAGC | 3 cut(s) | 945, 1283, 1288 |
| BlsI | GCNGC | 5 cut(s) | 602, 928, 931, 1489, 2065 |
| BmcAI | AGTACT | 1 cut(s) | 240 |
| Bme1390I | CCNGG | 8 cut(s) | 495, 558, 734, 1393, 1546, 1659, 1749, 1812 |
| Bme18I | GGWCC | 4 cut(s) | 479, 582, 1785, 1936 |
| BmgT120I | GGNCC | 6 cut(s) | 479, 582, 874, 875, 1785, 1936 |
| BmiI | GGNNCC | 4 cut(s) | 480, 876, 1938, 2058 |
| BmrFI | CCNGG | 8 cut(s) | 495, 558, 734, 1393, 1546, 1659, 1749, 1812 |
| BmrI | ACTGGG | 1 cut(s) | 1992 |
| BmsI | GCATC | 5 cut(s) | 294, 1260, 1378, 1497, 2170 |
| BmuI | ACTGGG | 1 cut(s) | 1992 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1271, 1303 |
| BpmI | CTGGAG | 1 cut(s) | 1528 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 945, 1283, 1288 |
| Bpu14I | TTCGAA | 1 cut(s) | 1676 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 2105 |
| BpuMI | CCSGG | 1 cut(s) | 1393 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1050 |
| BsaHI | GRCGYC | 1 cut(s) | 754 |
| BsaJI | CCNNGG | 4 cut(s) | 757, 1392, 1810, 2269 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 154, 433, 474, 475, 698, 1794, 2086 |
| Bse1I | ACTGG | 5 cut(s) | 1619, 1787, 1799, 1998, 2114 |
| Bse21I | CCTNAGG | 1 cut(s) | 24 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1050 |
| BseBI | CCWGG | 7 cut(s) | 495, 558, 734, 1546, 1659, 1749, 1812 |
| BseDI | CCNNGG | 4 cut(s) | 757, 1392, 1810, 2269 |
| BseGI | GGATG | 4 cut(s) | 310, 1512, 2193, 2202 |
| BseJI | GATNNNNATC | 1 cut(s) | 1050 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 154, 433, 474, 475, 698, 1794, 2086 |
| BseMII | CTCAG | 8 cut(s) | 15, 146, 634, 699, 959, 1274, 1302, 1854 |
| BseNI | ACTGG | 5 cut(s) | 1619, 1787, 1799, 1998, 2114 |
| BseRI | GAGGAG | 2 cut(s) | 1966, 2241 |
| BseSI | GKGCMC | 2 cut(s) | 653, 878 |
| BseXI | GCAGC | 4 cut(s) | 913, 941, 1474, 2075 |
| BseYI | CCCAGC | 3 cut(s) | 147, 438, 1355 |
| Bsh1236I | CGCG | 1 cut(s) | 699 |
| BshFI | GGCC | 3 cut(s) | 876, 1657, 2268 |
| BsiHKAI | GWGCWC | 2 cut(s) | 463, 1289 |
| BsiSI | CCGG | 1 cut(s) | 1392 |
| BslFI | GGGAC | 4 cut(s) | 129, 1372, 1400, 1979 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 154, 433, 474, 475, 698, 1794, 2086 |
| BsmAI | GTCTC | 2 cut(s) | 406, 964 |
| BsmFI | GGGAC | 4 cut(s) | 129, 1372, 1400, 1979 |
| BsmI | GAATGC | 1 cut(s) | 53 |
| BsnI | GGCC | 3 cut(s) | 876, 1657, 2268 |
| Bsp119I | TTCGAA | 1 cut(s) | 1676 |
| Bsp120I | GGGCCC | 1 cut(s) | 874 |
| Bsp1286I | GDGCHC | 5 cut(s) | 463, 653, 878, 1289, 1771 |
| Bsp143I | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 945, 1283, 1288 |
| BspACI | CCGC | 8 cut(s) | 224, 601, 692, 699, 1089, 1788, 1889, 2223 |
| BspANI | GGCC | 3 cut(s) | 876, 1657, 2268 |
| BspCNI | CTCAG | 8 cut(s) | 16, 145, 633, 700, 958, 1275, 1301, 1855 |
| BspFNI | CGCG | 1 cut(s) | 699 |
| BspLI | GGNNCC | 4 cut(s) | 480, 876, 1938, 2058 |
| BspMAI | CTGCAG | 1 cut(s) | 931 |
| BspPI | GGATC | 4 cut(s) | 1415, 1455, 2051, 2064 |
| BspT104I | TTCGAA | 1 cut(s) | 1676 |
| BsrI | ACTGG | 5 cut(s) | 1619, 1787, 1799, 1998, 2114 |
| BssECI | CCNNGG | 4 cut(s) | 757, 1392, 1810, 2269 |
| BssMI | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| BssNI | GRCGYC | 1 cut(s) | 754 |
| BssSI | CACGAG | 1 cut(s) | 1201 |
| BssT1I | CCWWGG | 1 cut(s) | 2269 |
| Bst2BI | CACGAG | 1 cut(s) | 1201 |
| Bst2UI | CCWGG | 7 cut(s) | 495, 558, 734, 1546, 1659, 1749, 1812 |
| Bst4CI | ACNGT | 9 cut(s) | 171, 285, 761, 910, 1005, 1169, 1373, 1918, 2252 |
| Bst6I | CTCTTC | 4 cut(s) | 389, 962, 1334, 1962 |
| BstACI | GRCGYC | 1 cut(s) | 754 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 597, 1234 |
| BstBI | TTCGAA | 1 cut(s) | 1676 |
| BstC8I | GCNNGC | 2 cut(s) | 951, 1574 |
| BstDSI | CCRYGG | 1 cut(s) | 757 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2084 |
| BstF5I | GGATG | 4 cut(s) | 310, 1512, 2193, 2202 |
| BstFNI | CGCG | 1 cut(s) | 699 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstKTI | GATC | 4 cut(s) | 1423, 1450, 1542, 2059 |
| BstMAI | GTCTC | 2 cut(s) | 406, 964 |
| BstMBI | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 59, 128, 266, 597, 950, 1234, 1279, 2030, 2117 |
| BstNI | CCWGG | 7 cut(s) | 495, 558, 734, 1546, 1659, 1749, 1812 |
| BstNSI | RCATGY | 3 cut(s) | 660, 1192, 1237 |
| BstSCI | CCNGG | 8 cut(s) | 493, 556, 732, 1391, 1544, 1657, 1747, 1810 |
| BstSFI | CTRYAG | 3 cut(s) | 678, 927, 1092 |
| BstSLI | GKGCMC | 2 cut(s) | 653, 878 |
| BstUI | CGCG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 4 cut(s) | 913, 941, 1474, 2075 |
| BstX2I | RGATCY | 1 cut(s) | 2056 |
| BstYI | RGATCY | 1 cut(s) | 2056 |
| Bsu36I | CCTNAGG | 1 cut(s) | 24 |
| BsuI | GTATCC | 1 cut(s) | 1064 |
| BsuRI | GGCC | 3 cut(s) | 876, 1657, 2268 |
| BtgI | CCRYGG | 1 cut(s) | 757 |
| BtsCI | GGATG | 4 cut(s) | 310, 1512, 2193, 2202 |
| BtsI | GCAGTG | 1 cut(s) | 1953 |
| BtsIMutI | CAGTG | 6 cut(s) | 855, 1378, 1923, 1953, 2121, 2257 |
| Cac8I | GCNNGC | 2 cut(s) | 951, 1574 |
| CaiI | CAGNNNCTG | 3 cut(s) | 289, 686, 1295 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 6 cut(s) | 479, 582, 874, 875, 1785, 1936 |
| CseI | GACGC | 1 cut(s) | 762 |
| CsiI | ACCWGGT | 2 cut(s) | 493, 556 |
| Csp6I | GTAC | 3 cut(s) | 18, 239, 1137 |
| CviAII | CATG | 8 cut(s) | 369, 646, 657, 1075, 1189, 1234, 1727, 1871 |
| CviQI | GTAC | 3 cut(s) | 18, 239, 1137 |
| DpnI | GATC | 4 cut(s) | 1422, 1449, 1541, 2058 |
| DpnII | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| DraI | TTTAAA | 1 cut(s) | 1558 |
| Eam1104I | CTCTTC | 4 cut(s) | 389, 962, 1334, 1962 |
| EarI | CTCTTC | 4 cut(s) | 389, 962, 1334, 1962 |
| EciI | GGCGGA | 1 cut(s) | 681 |
| Ecl136II | GAGCTC | 2 cut(s) | 461, 1287 |
| Eco130I | CCWWGG | 1 cut(s) | 2269 |
| Eco147I | AGGCCT | 1 cut(s) | 1657 |
| Eco24I | GRGCYC | 4 cut(s) | 463, 878, 1289, 1771 |
| Eco47I | GGWCC | 4 cut(s) | 479, 582, 1785, 1936 |
| Eco53kI | GAGCTC | 2 cut(s) | 461, 1287 |
| Eco57I | CTGAAG | 2 cut(s) | 311, 1295 |
| Eco81I | CCTNAGG | 1 cut(s) | 24 |
| EcoICRI | GAGCTC | 2 cut(s) | 461, 1287 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2084 |
| EcoO109I | RGGNCCY | 2 cut(s) | 874, 875 |
| EcoRI | GAATTC | 1 cut(s) | 1687 |
| EcoRII | CCWGG | 7 cut(s) | 493, 556, 732, 1544, 1657, 1747, 1810 |
| EcoT14I | CCWWGG | 1 cut(s) | 2269 |
| EcoT22I | ATGCAT | 1 cut(s) | 271 |
| EcoT38I | GRGCYC | 4 cut(s) | 463, 878, 1289, 1771 |
| ErhI | CCWWGG | 1 cut(s) | 2269 |
| FaeI | CATG | 8 cut(s) | 372, 649, 660, 1078, 1192, 1237, 1730, 1874 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 848, 880, 2030, 2062 |
| FaqI | GGGAC | 4 cut(s) | 129, 1372, 1400, 1979 |
| FatI | CATG | 8 cut(s) | 368, 645, 656, 1074, 1188, 1233, 1726, 1870 |
| FauNDI | CATATG | 2 cut(s) | 406, 1492 |
| Fnu4HI | GCNGC | 5 cut(s) | 601, 927, 930, 1488, 2064 |
| FokI | GGATG | 4 cut(s) | 297, 1519, 2200, 2209 |
| FriOI | GRGCYC | 4 cut(s) | 463, 878, 1289, 1771 |
| Fsp4HI | GCNGC | 5 cut(s) | 601, 927, 930, 1488, 2064 |
| FspBI | CTAG | 8 cut(s) | 105, 717, 768, 894, 1176, 2177, 2261, 2270 |
| GlaI | GCGC | 1 cut(s) | 346 |
| GluI | GCNGC | 5 cut(s) | 601, 927, 930, 1488, 2064 |
| GsaI | CCCAGC | 3 cut(s) | 151, 442, 1359 |
| GsuI | CTGGAG | 1 cut(s) | 1528 |
| HaeIII | GGCC | 3 cut(s) | 876, 1657, 2268 |
| HapII | CCGG | 1 cut(s) | 1392 |
| HgaI | GACGC | 1 cut(s) | 762 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1I | GRCGYC | 1 cut(s) | 754 |
| Hin1II | CATG | 8 cut(s) | 372, 649, 660, 1078, 1192, 1237, 1730, 1874 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HincII | GTYRAC | 1 cut(s) | 174 |
| HindII | GTYRAC | 1 cut(s) | 174 |
| HpaII | CCGG | 1 cut(s) | 1392 |
| HphI | GGTGA | 7 cut(s) | 572, 1511, 1717, 1826, 2027, 2101, 2258 |
| Hpy166II | GTNNAC | 2 cut(s) | 174, 776 |
| Hpy188III | TCNNGA | 9 cut(s) | 23, 314, 580, 622, 789, 1220, 1424, 1469, 1584 |
| Hpy8I | GTNNAC | 2 cut(s) | 174, 776 |
| HpyAV | CCTTC | 8 cut(s) | 121, 335, 874, 1061, 1240, 1270, 1696, 1936 |
| HpyCH4III | ACNGT | 9 cut(s) | 171, 285, 761, 910, 1005, 1169, 1373, 1918, 2252 |
| HpyCH4IV | ACGT | 2 cut(s) | 1513, 1666 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 59, 128, 266, 597, 950, 1234, 1279, 2030, 2117 |
| HpySE526I | ACGT | 2 cut(s) | 1513, 1666 |
| Hsp92I | GRCGYC | 1 cut(s) | 754 |
| Hsp92II | CATG | 8 cut(s) | 372, 649, 660, 1078, 1192, 1237, 1730, 1874 |
| HspAI | GCGC | 1 cut(s) | 345 |
| Kzo9I | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| LmnI | GCTCC | 4 cut(s) | 458, 694, 1279, 2038 |
| Lsp1109I | GCAGC | 4 cut(s) | 913, 941, 1474, 2075 |
| LweI | GCATC | 5 cut(s) | 294, 1260, 1378, 1497, 2170 |
| MabI | ACCWGGT | 2 cut(s) | 493, 556 |
| MaeI | CTAG | 8 cut(s) | 105, 717, 768, 894, 1176, 2177, 2261, 2270 |
| MaeII | ACGT | 2 cut(s) | 1513, 1666 |
| MaeIII | GTNAC | 3 cut(s) | 517, 2000, 2246 |
| MalI | GATC | 4 cut(s) | 1422, 1449, 1541, 2058 |
| MboI | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| MfeI | CAATTG | 1 cut(s) | 978 |
| MflI | RGATCY | 1 cut(s) | 2056 |
| MhlI | GDGCHC | 5 cut(s) | 463, 653, 878, 1289, 1771 |
| MlyI | GAGTC | 2 cut(s) | 719, 1436 |
| MmeI | TCCRAC | 4 cut(s) | 196, 892, 1691, 2110 |
| Mph1103I | ATGCAT | 1 cut(s) | 271 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1691 |
| MseI | TTAA | 9 cut(s) | 272, 783, 1007, 1242, 1406, 1557, 1578, 1824, 1896 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1056, 1703 |
| MspA1I | CMGCKG | 5 cut(s) | 932, 949, 1091, 1572, 1790 |
| MspI | CCGG | 1 cut(s) | 1392 |
| MspR9I | CCNGG | 8 cut(s) | 495, 558, 734, 1393, 1546, 1659, 1749, 1812 |
| MunI | CAATTG | 1 cut(s) | 978 |
| Mva1269I | GAATGC | 1 cut(s) | 53 |
| MvaI | CCWGG | 7 cut(s) | 495, 558, 734, 1546, 1659, 1749, 1812 |
| MvnI | CGCG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 59, 128, 266, 597, 950, 1234, 1279, 2030, 2117 |
| NciI | CCSGG | 1 cut(s) | 1393 |
| NdeI | CATATG | 2 cut(s) | 406, 1492 |
| NdeII | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| NlaIII | CATG | 8 cut(s) | 372, 649, 660, 1078, 1192, 1237, 1730, 1874 |
| NlaIV | GGNNCC | 4 cut(s) | 480, 876, 1938, 2058 |
| NmuCI | GTSAC | 2 cut(s) | 2000, 2246 |
| NsiI | ATGCAT | 1 cut(s) | 271 |
| NspI | RCATGY | 3 cut(s) | 660, 1192, 1237 |
| NspV | TTCGAA | 1 cut(s) | 1676 |
| OliI | CACNNNNGTG | 1 cut(s) | 1703 |
| PceI | AGGCCT | 1 cut(s) | 1657 |
| PciI | ACATGT | 1 cut(s) | 656 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 53 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1691 |
| PfeI | GAWTC | 9 cut(s) | 250, 446, 997, 1130, 1298, 1735, 1798, 1957, 2191 |
| PfoI | TCCNGGA | 2 cut(s) | 1544, 1747 |
| PkrI | GCNGC | 5 cut(s) | 602, 928, 931, 1489, 2065 |
| PleI | GAGTC | 2 cut(s) | 718, 1436 |
| PpsI | GAGTC | 2 cut(s) | 718, 1436 |
| PscI | ACATGT | 1 cut(s) | 656 |
| PshBI | ATTAAT | 1 cut(s) | 272 |
| Psp124BI | GAGCTC | 2 cut(s) | 463, 1289 |
| Psp6I | CCWGG | 7 cut(s) | 493, 556, 732, 1544, 1657, 1747, 1810 |
| PspFI | CCCAGC | 3 cut(s) | 147, 438, 1355 |
| PspGI | CCWGG | 7 cut(s) | 493, 556, 732, 1544, 1657, 1747, 1810 |
| PspN4I | GGNNCC | 4 cut(s) | 480, 876, 1938, 2058 |
| PspOMI | GGGCCC | 1 cut(s) | 874 |
| PspPI | GGNCC | 6 cut(s) | 479, 582, 874, 875, 1785, 1936 |
| PstI | CTGCAG | 1 cut(s) | 931 |
| PstNI | CAGNNNCTG | 3 cut(s) | 289, 686, 1295 |
| PsuI | RGATCY | 1 cut(s) | 2056 |
| PvuII | CAGCTG | 3 cut(s) | 932, 949, 1572 |
| RsaI | GTAC | 3 cut(s) | 19, 240, 1138 |
| RsaNI | GTAC | 3 cut(s) | 18, 239, 1137 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1056, 1703 |
| SacI | GAGCTC | 2 cut(s) | 463, 1289 |
| SaqAI | TTAA | 9 cut(s) | 272, 783, 1007, 1242, 1406, 1557, 1578, 1824, 1896 |
| SatI | GCNGC | 5 cut(s) | 601, 927, 930, 1488, 2064 |
| Sau3AI | GATC | 4 cut(s) | 1420, 1447, 1539, 2056 |
| Sau96I | GGNCC | 6 cut(s) | 479, 582, 874, 875, 1785, 1936 |
| ScaI | AGTACT | 1 cut(s) | 240 |
| SchI | GAGTC | 2 cut(s) | 719, 1436 |
| ScrFI | CCNGG | 8 cut(s) | 495, 558, 734, 1393, 1546, 1659, 1749, 1812 |
| SduI | GDGCHC | 5 cut(s) | 463, 653, 878, 1289, 1771 |
| SexAI | ACCWGGT | 2 cut(s) | 493, 556 |
| SfaNI | GCATC | 5 cut(s) | 294, 1260, 1378, 1497, 2170 |
| SfcI | CTRYAG | 3 cut(s) | 678, 927, 1092 |
| SfuI | TTCGAA | 1 cut(s) | 1676 |
| SinI | GGWCC | 4 cut(s) | 479, 582, 1785, 1936 |
| SmiI | ATTTAAAT | 1 cut(s) | 1558 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1056, 1703 |
| SmlI | CTYRAG | 2 cut(s) | 152, 2084 |
| SmoI | CTYRAG | 2 cut(s) | 152, 2084 |
| SpeI | ACTAGT | 1 cut(s) | 893 |
| SseBI | AGGCCT | 1 cut(s) | 1657 |
| SsiI | CCGC | 8 cut(s) | 224, 601, 692, 699, 1089, 1788, 1889, 2223 |
| SspMI | CTAG | 8 cut(s) | 105, 717, 768, 894, 1176, 2177, 2261, 2270 |
| SstI | GAGCTC | 2 cut(s) | 463, 1289 |
| StuI | AGGCCT | 1 cut(s) | 1657 |
| StyD4I | CCNGG | 8 cut(s) | 493, 556, 732, 1391, 1544, 1657, 1747, 1810 |
| StyI | CCWWGG | 1 cut(s) | 2269 |
| SwaI | ATTTAAAT | 1 cut(s) | 1558 |
| TaaI | ACNGT | 9 cut(s) | 171, 285, 761, 910, 1005, 1169, 1373, 1918, 2252 |
| TaiI | ACGT | 2 cut(s) | 1516, 1669 |
| TaqI | TCGA | 2 cut(s) | 1450, 1676 |
| TatI | WGTACW | 2 cut(s) | 17, 238 |
| TauI | GCSGC | 1 cut(s) | 603 |
| TfiI | GAWTC | 9 cut(s) | 250, 446, 997, 1130, 1298, 1735, 1798, 1957, 2191 |
| Tru1I | TTAA | 9 cut(s) | 272, 783, 1007, 1242, 1406, 1557, 1578, 1824, 1896 |
| Tru9I | TTAA | 9 cut(s) | 272, 783, 1007, 1242, 1406, 1557, 1578, 1824, 1896 |
| TscAI | CASTG | 6 cut(s) | 855, 1378, 1923, 1953, 2121, 2257 |
| TseFI | GTSAC | 2 cut(s) | 2000, 2246 |
| TseI | GCWGC | 4 cut(s) | 926, 929, 1487, 2063 |
| Tsp45I | GTSAC | 2 cut(s) | 2000, 2246 |
| TspDTI | ATGAA | 5 cut(s) | 299, 903, 1119, 1421, 1596 |
| TspGWI | ACGGA | 1 cut(s) | 471 |
| TspRI | CASTG | 6 cut(s) | 855, 1378, 1923, 1953, 2121, 2257 |
| VpaK11BI | GGWCC | 4 cut(s) | 479, 582, 1785, 1936 |
| VspI | ATTAAT | 1 cut(s) | 272 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2084 |
| XapI | RAATTY | 4 cut(s) | 502, 814, 1015, 1687 |
| XceI | RCATGY | 3 cut(s) | 660, 1192, 1237 |
| XmaJI | CCTAGG | 1 cut(s) | 2269 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1691 |
| XspI | CTAG | 8 cut(s) | 105, 717, 768, 894, 1176, 2177, 2261, 2270 |
| ZrmI | AGTACT | 1 cut(s) | 240 |
| Zsp2I | ATGCAT | 1 cut(s) | 271 |