Domain of unknown function (DUF3444)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25560 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150 |
| fragaria_vesca | FvH4_7g31170 |
| malus_domestica | MD01G1216400.v1.1 MD07G1286200.v1.1 |
| prunus_persica | Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1 |
| pyrus_communis | pycom01g22710 pycom07g25950 |
| rosa_chinensis | RchiOBHm_Chr1g0380211 |
| rosa_laevigata | RLG00000026319 |
| rosa_multiflora | Rmu_sc0001232.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00279560 |
| rosa_rugosa | Rorug01G0419000 |
| rosa_samantha | Rh1AG443900 Rh1BG398900 Rh1CG412300 Rh1DG429500 |
| rosa_wichuraiana | Rw1G038550 Rw1G038620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2219 |
| AarI | CACCTGC | 1 cut(s) | 811 |
| Acc36I | ACCTGC | 1 cut(s) | 811 |
| AccII | CGCG | 2 cut(s) | 1396, 1866 |
| AccIII | TCCGGA | 1 cut(s) | 283 |
| AciI | CCGC | 6 cut(s) | 23, 806, 869, 1043, 1396, 1690 |
| AclWI | GGATC | 6 cut(s) | 1157, 1496, 1581, 1581, 2177, 2190 |
| AcoI | YGGCCR | 1 cut(s) | 2326 |
| AcsI | RAATTY | 7 cut(s) | 106, 853, 1075, 1120, 1278, 1653, 1813 |
| AcuI | CTGAAG | 2 cut(s) | 924, 1431 |
| AdeI | CACNNNGTG | 1 cut(s) | 2002 |
| AfaI | GTAC | 7 cut(s) | 210, 396, 427, 562, 1297, 1732, 2314 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 429, 1324, 1609, 1880, 1920 |
| AjiI | CACGTC | 1 cut(s) | 1231 |
| AjnI | CCWGG | 3 cut(s) | 338, 1783, 2066 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 764, 796, 1575, 1607 |
| AleI | CACNNNNGTG | 2 cut(s) | 528, 992 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1147, 1179 |
| Alw21I | GWGCWC | 2 cut(s) | 833, 1403 |
| Alw26I | GTCTC | 3 cut(s) | 134, 510, 1355 |
| AlwI | GGATC | 6 cut(s) | 1157, 1496, 1581, 1581, 2177, 2190 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1409 |
| Ama87I | CYCGRG | 2 cut(s) | 116, 1708 |
| Aor13HI | TCCGGA | 1 cut(s) | 283 |
| AoxI | GGCC | 4 cut(s) | 336, 360, 1781, 2326 |
| ApeKI | GCWGC | 7 cut(s) | 518, 677, 908, 911, 1031, 1613, 2189 |
| ApoI | RAATTY | 7 cut(s) | 106, 853, 1075, 1120, 1278, 1653, 1813 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1299, 1331 |
| AseI | ATTAAT | 1 cut(s) | 183 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 776, 2274 |
| AspLEI | GCGC | 2 cut(s) | 317, 1396 |
| AsuHPI | GGTGA | 4 cut(s) | 1515, 1675, 1784, 2153 |
| AvaI | CYCGRG | 2 cut(s) | 116, 1708 |
| AxyI | CCTNAGG | 1 cut(s) | 1311 |
| BamHI | GGATCC | 1 cut(s) | 2182 |
| BanII | GRGCYC | 4 cut(s) | 833, 983, 1403, 1897 |
| BauI | CACGAG | 2 cut(s) | 1851, 2229 |
| BbsI | GAAGAC | 3 cut(s) | 497, 779, 930 |
| Bbv12I | GWGCWC | 2 cut(s) | 833, 1403 |
| BbvI | GCAGC | 7 cut(s) | 505, 664, 895, 923, 1018, 1600, 2201 |
| BccI | CCATC | 3 cut(s) | 701, 1622, 2249 |
| BceAI | ACGGC | 4 cut(s) | 1100, 1380, 1663, 1996 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1356, 1390 |
| BciT130I | CCWGG | 3 cut(s) | 340, 1785, 2068 |
| BcoDI | GTCTC | 3 cut(s) | 134, 510, 1355 |
| BfaI | CTAG | 6 cut(s) | 75, 450, 552, 600, 1293, 2124 |
| BfmI | CTRYAG | 3 cut(s) | 526, 786, 909 |
| BfuAI | ACCTGC | 1 cut(s) | 811 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2325 |
| BisI | GCNGC | 8 cut(s) | 519, 678, 870, 909, 912, 1032, 1614, 2190 |
| BlpI | GCTNAGC | 1 cut(s) | 1402 |
| BlsI | GCNGC | 8 cut(s) | 520, 679, 871, 910, 913, 1033, 1615, 2191 |
| BmcAI | AGTACT | 1 cut(s) | 210 |
| Bme1390I | CCNGG | 3 cut(s) | 340, 1785, 2068 |
| BmeT110I | CYCGRG | 2 cut(s) | 116, 1708 |
| BmgBI | CACGTC | 1 cut(s) | 1231 |
| BmrFI | CCNGG | 3 cut(s) | 340, 1785, 2068 |
| BmrI | ACTGGG | 2 cut(s) | 438, 1750 |
| BmsI | GCATC | 8 cut(s) | 10, 571, 614, 1030, 1677, 1930, 2122, 2224 |
| BmuI | ACTGGG | 2 cut(s) | 438, 1750 |
| BpiI | GAAGAC | 3 cut(s) | 497, 779, 930 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 116, 148 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1402 |
| BpuEI | CTTGAG | 2 cut(s) | 143, 1807 |
| BsaI | GGTCTC | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 4 cut(s) | 1209, 2066, 2067, 2329 |
| BsaWI | WCCGGW | 2 cut(s) | 283, 1336 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1215, 1245 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 429, 1324, 1609, 1880, 1920 |
| Bse1I | ACTGG | 4 cut(s) | 433, 1745, 1913, 2240 |
| Bse21I | CCTNAGG | 1 cut(s) | 1311 |
| Bse3DI | GCAATG | 1 cut(s) | 703 |
| BseAI | TCCGGA | 1 cut(s) | 283 |
| BseBI | CCWGG | 3 cut(s) | 340, 1785, 2068 |
| BseDI | CCNNGG | 4 cut(s) | 1209, 2066, 2067, 2329 |
| BseGI | GGATG | 5 cut(s) | 280, 586, 1045, 1165, 1863 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 429, 1324, 1609, 1880, 1920 |
| BseMI | GCAATG | 1 cut(s) | 703 |
| BseMII | CTCAG | 6 cut(s) | 36, 226, 1236, 1333, 1416, 1980 |
| BseNI | ACTGG | 4 cut(s) | 433, 1745, 1913, 2240 |
| BseRI | GAGGAG | 2 cut(s) | 2004, 2108 |
| BseXI | GCAGC | 7 cut(s) | 505, 664, 895, 923, 1018, 1600, 2201 |
| BseYI | CCCAGC | 3 cut(s) | 591, 639, 929 |
| BsgI | GTGCAG | 2 cut(s) | 327, 504 |
| Bsh1236I | CGCG | 2 cut(s) | 1396, 1866 |
| BshFI | GGCC | 4 cut(s) | 338, 362, 1783, 2328 |
| BsiHKAI | GWGCWC | 2 cut(s) | 833, 1403 |
| BsiHKCI | CYCGRG | 2 cut(s) | 116, 1708 |
| BsiSI | CCGG | 2 cut(s) | 284, 1337 |
| BslFI | GGGAC | 3 cut(s) | 99, 1897, 2105 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 429, 1324, 1609, 1880, 1920 |
| BsmAI | GTCTC | 3 cut(s) | 134, 510, 1355 |
| BsmBI | CGTCTC | 2 cut(s) | 510, 1355 |
| BsmFI | GGGAC | 3 cut(s) | 99, 1897, 2105 |
| BsmI | GAATGC | 1 cut(s) | 634 |
| BsnI | GGCC | 4 cut(s) | 338, 362, 1783, 2328 |
| Bso31I | GGTCTC | 1 cut(s) | 134 |
| BsoBI | CYCGRG | 2 cut(s) | 116, 1708 |
| Bsp1286I | GDGCHC | 4 cut(s) | 833, 983, 1403, 1897 |
| Bsp13I | TCCGGA | 1 cut(s) | 283 |
| Bsp1407I | TGTACA | 1 cut(s) | 394 |
| Bsp143I | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1402 |
| Bsp19I | CCATGG | 1 cut(s) | 1209 |
| BspACI | CCGC | 6 cut(s) | 23, 806, 869, 1043, 1396, 1690 |
| BspANI | GGCC | 4 cut(s) | 338, 362, 1783, 2328 |
| BspCNI | CTCAG | 6 cut(s) | 37, 225, 1237, 1332, 1415, 1981 |
| BspEI | TCCGGA | 1 cut(s) | 283 |
| BspFNI | CGCG | 2 cut(s) | 1396, 1866 |
| BspMAI | CTGCAG | 1 cut(s) | 913 |
| BspMI | ACCTGC | 1 cut(s) | 811 |
| BspPI | GGATC | 6 cut(s) | 1157, 1496, 1581, 1581, 2177, 2190 |
| BspQI | GCTCTTC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 1 cut(s) | 703 |
| BsrGI | TGTACA | 1 cut(s) | 394 |
| BsrI | ACTGG | 4 cut(s) | 433, 1745, 1913, 2240 |
| BssECI | CCNNGG | 4 cut(s) | 1209, 2066, 2067, 2329 |
| BssMI | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| BssSI | CACGAG | 2 cut(s) | 1851, 2229 |
| BssT1I | CCWWGG | 2 cut(s) | 1209, 2329 |
| Bst2BI | CACGAG | 2 cut(s) | 1851, 2229 |
| Bst2UI | CCWGG | 3 cut(s) | 340, 1785, 2068 |
| Bst6I | CTCTTC | 4 cut(s) | 172, 838, 1460, 2265 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 677, 705 |
| BstAUI | TGTACA | 1 cut(s) | 394 |
| BstC8I | GCNNGC | 3 cut(s) | 457, 1053, 1422 |
| BstDSI | CCRYGG | 1 cut(s) | 1209 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| BstF5I | GGATG | 5 cut(s) | 280, 586, 1045, 1165, 1863 |
| BstFNI | CGCG | 2 cut(s) | 1396, 1866 |
| BstHHI | GCGC | 2 cut(s) | 317, 1396 |
| BstKTI | GATC | 7 cut(s) | 1165, 1504, 1536, 1576, 1589, 1668, 2185 |
| BstMAI | GTCTC | 3 cut(s) | 134, 510, 1355 |
| BstMBI | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| BstNI | CCWGG | 3 cut(s) | 340, 1785, 2068 |
| BstNSI | RCATGY | 1 cut(s) | 2319 |
| BstSCI | CCNGG | 3 cut(s) | 338, 1783, 2066 |
| BstSFI | CTRYAG | 3 cut(s) | 526, 786, 909 |
| BstUI | CGCG | 2 cut(s) | 1396, 1866 |
| BstV1I | GCAGC | 7 cut(s) | 505, 664, 895, 923, 1018, 1600, 2201 |
| BstV2I | GAAGAC | 3 cut(s) | 497, 779, 930 |
| BstX2I | RGATCY | 2 cut(s) | 1586, 2182 |
| BstYI | RGATCY | 2 cut(s) | 1586, 2182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1311 |
| BsuRI | GGCC | 4 cut(s) | 338, 362, 1783, 2328 |
| BtgI | CCRYGG | 1 cut(s) | 1209 |
| BtrI | CACGTC | 1 cut(s) | 1231 |
| BtsCI | GGATG | 5 cut(s) | 280, 586, 1045, 1165, 1863 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 7 cut(s) | 220, 423, 447, 523, 1504, 2049, 2247 |
| BveI | ACCTGC | 1 cut(s) | 811 |
| Cac8I | GCNNGC | 3 cut(s) | 457, 1053, 1422 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1409 |
| CfoI | GCGC | 2 cut(s) | 317, 1396 |
| CseI | GACGC | 2 cut(s) | 492, 836 |
| Csp6I | GTAC | 7 cut(s) | 209, 395, 426, 561, 1296, 1731, 2313 |
| CviAII | CATG | 4 cut(s) | 274, 1210, 1963, 2316 |
| CviQI | GTAC | 7 cut(s) | 209, 395, 426, 561, 1296, 1731, 2313 |
| DpnI | GATC | 7 cut(s) | 1164, 1503, 1535, 1575, 1588, 1667, 2184 |
| DpnII | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| DraI | TTTAAA | 3 cut(s) | 954, 1812, 2038 |
| DraIII | CACNNNGTG | 1 cut(s) | 2002 |
| EaeI | YGGCCR | 1 cut(s) | 2326 |
| Eam1104I | CTCTTC | 4 cut(s) | 172, 838, 1460, 2265 |
| EarI | CTCTTC | 4 cut(s) | 172, 838, 1460, 2265 |
| Ecl136II | GAGCTC | 2 cut(s) | 831, 1401 |
| Eco130I | CCWWGG | 2 cut(s) | 1209, 2329 |
| Eco147I | AGGCCT | 2 cut(s) | 338, 1783 |
| Eco24I | GRGCYC | 4 cut(s) | 833, 983, 1403, 1897 |
| Eco31I | GGTCTC | 1 cut(s) | 134 |
| Eco53kI | GAGCTC | 2 cut(s) | 831, 1401 |
| Eco57I | CTGAAG | 2 cut(s) | 924, 1431 |
| Eco81I | CCTNAGG | 1 cut(s) | 1311 |
| Eco88I | CYCGRG | 2 cut(s) | 116, 1708 |
| EcoICRI | GAGCTC | 2 cut(s) | 831, 1401 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| EcoO109I | RGGNCCY | 5 cut(s) | 588, 636, 944, 1315, 2119 |
| EcoRI | GAATTC | 2 cut(s) | 853, 1653 |
| EcoRII | CCWGG | 3 cut(s) | 338, 1783, 2066 |
| EcoT14I | CCWWGG | 2 cut(s) | 1209, 2329 |
| EcoT38I | GRGCYC | 4 cut(s) | 833, 983, 1403, 1897 |
| ErhI | CCWWGG | 2 cut(s) | 1209, 2329 |
| Esp3I | CGTCTC | 2 cut(s) | 510, 1355 |
| FaeI | CATG | 4 cut(s) | 277, 1213, 1966, 2319 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 764, 796 |
| FaqI | GGGAC | 3 cut(s) | 99, 1897, 2105 |
| FatI | CATG | 4 cut(s) | 273, 1209, 1962, 2315 |
| FauI | CCCGC | 1 cut(s) | 1683 |
| FauNDI | CATATG | 2 cut(s) | 667, 1618 |
| Fnu4HI | GCNGC | 8 cut(s) | 519, 678, 870, 909, 912, 1032, 1614, 2190 |
| FokI | GGATG | 5 cut(s) | 267, 593, 1052, 1172, 1870 |
| FriOI | GRGCYC | 4 cut(s) | 833, 983, 1403, 1897 |
| Fsp4HI | GCNGC | 8 cut(s) | 519, 678, 870, 909, 912, 1032, 1614, 2190 |
| FspBI | CTAG | 6 cut(s) | 75, 450, 552, 600, 1293, 2124 |
| GlaI | GCGC | 2 cut(s) | 316, 1395 |
| GluI | GCNGC | 8 cut(s) | 519, 678, 870, 909, 912, 1032, 1614, 2190 |
| GsaI | CCCAGC | 3 cut(s) | 595, 643, 933 |
| HaeIII | GGCC | 4 cut(s) | 338, 362, 1783, 2328 |
| HapII | CCGG | 2 cut(s) | 284, 1337 |
| HgaI | GACGC | 2 cut(s) | 492, 836 |
| HhaI | GCGC | 2 cut(s) | 317, 1396 |
| Hin1II | CATG | 4 cut(s) | 277, 1213, 1966, 2319 |
| Hin6I | GCGC | 2 cut(s) | 315, 1394 |
| HinP1I | GCGC | 2 cut(s) | 315, 1394 |
| HincII | GTYRAC | 3 cut(s) | 144, 543, 1483 |
| HindII | GTYRAC | 3 cut(s) | 144, 543, 1483 |
| HinfI | GANTC | 5 cut(s) | 1114, 1861, 1924, 2083, 2275 |
| HpaII | CCGG | 2 cut(s) | 284, 1337 |
| HphI | GGTGA | 4 cut(s) | 1515, 1675, 1784, 2153 |
| Hpy166II | GTNNAC | 5 cut(s) | 144, 160, 543, 1298, 1483 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 284, 487, 858, 1505, 1544, 1710, 2231 |
| Hpy8I | GTNNAC | 5 cut(s) | 144, 160, 543, 1298, 1483 |
| Hpy99I | CGWCG | 2 cut(s) | 1232, 2306 |
| HpyAV | CCTTC | 5 cut(s) | 91, 305, 672, 1120, 2208 |
| HpyCH4IV | ACGT | 1 cut(s) | 1230 |
| HpySE526I | ACGT | 1 cut(s) | 1230 |
| Hsp92II | CATG | 4 cut(s) | 277, 1213, 1966, 2319 |
| HspAI | GCGC | 2 cut(s) | 315, 1394 |
| KflI | GGGWCCC | 1 cut(s) | 2119 |
| Kpn2I | TCCGGA | 1 cut(s) | 283 |
| Kzo9I | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| LguI | GCTCTTC | 1 cut(s) | 838 |
| LmnI | GCTCC | 7 cut(s) | 802, 926, 1223, 1398, 2017, 2164, 2203 |
| Lsp1109I | GCAGC | 7 cut(s) | 505, 664, 895, 923, 1018, 1600, 2201 |
| LweI | GCATC | 8 cut(s) | 10, 571, 614, 1030, 1677, 1930, 2122, 2224 |
| MaeI | CTAG | 6 cut(s) | 75, 450, 552, 600, 1293, 2124 |
| MaeII | ACGT | 1 cut(s) | 1230 |
| MaeIII | GTNAC | 7 cut(s) | 217, 574, 878, 994, 1025, 1521, 2126 |
| MalI | GATC | 7 cut(s) | 1164, 1503, 1535, 1575, 1588, 1667, 2184 |
| MboI | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| MfeI | CAATTG | 1 cut(s) | 1095 |
| MflI | RGATCY | 2 cut(s) | 1586, 2182 |
| MhlI | GDGCHC | 4 cut(s) | 833, 983, 1403, 1897 |
| MlyI | GAGTC | 2 cut(s) | 1123, 1933 |
| MroI | TCCGGA | 1 cut(s) | 283 |
| MroXI | GAANNNNTTC | 2 cut(s) | 776, 2274 |
| MseI | TTAA | 9 cut(s) | 183, 246, 321, 953, 1683, 1704, 1811, 1833, 2037 |
| MslI | CAYNNNNRTG | 2 cut(s) | 528, 992 |
| MspA1I | CMGCKG | 1 cut(s) | 1051 |
| MspI | CCGG | 2 cut(s) | 284, 1337 |
| MspR9I | CCNGG | 3 cut(s) | 340, 1785, 2068 |
| MunI | CAATTG | 1 cut(s) | 1095 |
| Mva1269I | GAATGC | 1 cut(s) | 634 |
| MvaI | CCWGG | 3 cut(s) | 340, 1785, 2068 |
| MvnI | CGCG | 2 cut(s) | 1396, 1866 |
| NcoI | CCATGG | 1 cut(s) | 1209 |
| NdeI | CATATG | 2 cut(s) | 667, 1618 |
| NdeII | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| NlaIII | CATG | 4 cut(s) | 277, 1213, 1966, 2319 |
| NmuCI | GTSAC | 4 cut(s) | 994, 1025, 1521, 2126 |
| NspI | RCATGY | 1 cut(s) | 2319 |
| OliI | CACNNNNGTG | 2 cut(s) | 528, 992 |
| PaeR7I | CTCGAG | 1 cut(s) | 1708 |
| PaqCI | CACCTGC | 1 cut(s) | 811 |
| PasI | CCCWGGG | 1 cut(s) | 2067 |
| PceI | AGGCCT | 2 cut(s) | 338, 1783 |
| PciSI | GCTCTTC | 1 cut(s) | 838 |
| PctI | GAATGC | 1 cut(s) | 634 |
| PdmI | GAANNNNTTC | 2 cut(s) | 776, 2274 |
| PfeI | GAWTC | 3 cut(s) | 1861, 2083, 2275 |
| PkrI | GCNGC | 8 cut(s) | 520, 679, 871, 910, 913, 1033, 1615, 2191 |
| PleI | GAGTC | 2 cut(s) | 1122, 1932 |
| PpsI | GAGTC | 2 cut(s) | 1122, 1932 |
| PpuMI | RGGWCCY | 5 cut(s) | 588, 636, 944, 1315, 2119 |
| PshBI | ATTAAT | 1 cut(s) | 183 |
| PsiI | TTATAA | 1 cut(s) | 2219 |
| Psp124BI | GAGCTC | 2 cut(s) | 833, 1403 |
| Psp5II | RGGWCCY | 5 cut(s) | 588, 636, 944, 1315, 2119 |
| Psp6I | CCWGG | 3 cut(s) | 338, 1783, 2066 |
| PspFI | CCCAGC | 3 cut(s) | 591, 639, 929 |
| PspGI | CCWGG | 3 cut(s) | 338, 1783, 2066 |
| PspPPI | RGGWCCY | 5 cut(s) | 588, 636, 944, 1315, 2119 |
| PstI | CTGCAG | 1 cut(s) | 913 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1409 |
| PsuI | RGATCY | 2 cut(s) | 1586, 2182 |
| PvuII | CAGCTG | 1 cut(s) | 1051 |
| RsaI | GTAC | 7 cut(s) | 210, 396, 427, 562, 1297, 1732, 2314 |
| RsaNI | GTAC | 7 cut(s) | 209, 395, 426, 561, 1296, 1731, 2313 |
| RseI | CAYNNNNRTG | 2 cut(s) | 528, 992 |
| SacI | GAGCTC | 2 cut(s) | 833, 1403 |
| SapI | GCTCTTC | 1 cut(s) | 838 |
| SaqAI | TTAA | 9 cut(s) | 183, 246, 321, 953, 1683, 1704, 1811, 1833, 2037 |
| SatI | GCNGC | 8 cut(s) | 519, 678, 870, 909, 912, 1032, 1614, 2190 |
| Sau3AI | GATC | 7 cut(s) | 1162, 1501, 1533, 1573, 1586, 1665, 2182 |
| ScaI | AGTACT | 1 cut(s) | 210 |
| SchI | GAGTC | 2 cut(s) | 1123, 1933 |
| ScrFI | CCNGG | 3 cut(s) | 340, 1785, 2068 |
| SduI | GDGCHC | 4 cut(s) | 833, 983, 1403, 1897 |
| SfaNI | GCATC | 8 cut(s) | 10, 571, 614, 1030, 1677, 1930, 2122, 2224 |
| SfcI | CTRYAG | 3 cut(s) | 526, 786, 909 |
| Sfr274I | CTCGAG | 1 cut(s) | 1708 |
| SlaI | CTCGAG | 1 cut(s) | 1708 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 528, 992 |
| SmlI | CTYRAG | 3 cut(s) | 122, 1708, 1822 |
| SmoI | CTYRAG | 3 cut(s) | 122, 1708, 1822 |
| SseBI | AGGCCT | 2 cut(s) | 338, 1783 |
| SsiI | CCGC | 6 cut(s) | 23, 806, 869, 1043, 1396, 1690 |
| SspMI | CTAG | 6 cut(s) | 75, 450, 552, 600, 1293, 2124 |
| SstI | GAGCTC | 2 cut(s) | 833, 1403 |
| StuI | AGGCCT | 2 cut(s) | 338, 1783 |
| StyD4I | CCNGG | 3 cut(s) | 338, 1783, 2066 |
| StyI | CCWWGG | 2 cut(s) | 1209, 2329 |
| TaiI | ACGT | 1 cut(s) | 1233 |
| TaqI | TCGA | 4 cut(s) | 1376, 1576, 1651, 1709 |
| TaqII | GACCGA | 1 cut(s) | 2315 |
| TatI | WGTACW | 4 cut(s) | 208, 394, 425, 1295 |
| TauI | GCSGC | 1 cut(s) | 872 |
| TfiI | GAWTC | 3 cut(s) | 1861, 2083, 2275 |
| Tru1I | TTAA | 9 cut(s) | 183, 246, 321, 953, 1683, 1704, 1811, 1833, 2037 |
| Tru9I | TTAA | 9 cut(s) | 183, 246, 321, 953, 1683, 1704, 1811, 1833, 2037 |
| TscAI | CASTG | 7 cut(s) | 220, 423, 447, 530, 1504, 2049, 2247 |
| TseFI | GTSAC | 4 cut(s) | 994, 1025, 1521, 2126 |
| TseI | GCWGC | 7 cut(s) | 518, 677, 908, 911, 1031, 1613, 2189 |
| Tsp45I | GTSAC | 4 cut(s) | 994, 1025, 1521, 2126 |
| TspDTI | ATGAA | 9 cut(s) | 262, 269, 491, 641, 654, 1082, 1547, 1737, 2283 |
| TspGWI | ACGGA | 6 cut(s) | 213, 426, 528, 593, 1172, 2093 |
| TspRI | CASTG | 7 cut(s) | 220, 423, 447, 530, 1504, 2049, 2247 |
| VspI | ATTAAT | 1 cut(s) | 183 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| XapI | RAATTY | 7 cut(s) | 106, 853, 1075, 1120, 1278, 1653, 1813 |
| XceI | RCATGY | 1 cut(s) | 2319 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2169 |
| XhoI | CTCGAG | 1 cut(s) | 1708 |
| XmnI | GAANNNNTTC | 2 cut(s) | 776, 2274 |
| XspI | CTAG | 6 cut(s) | 75, 450, 552, 600, 1293, 2124 |
| ZrmI | AGTACT | 1 cut(s) | 210 |