Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006456

Physical Location & Seq

Genomic Coordinates Reverse (-)

52272858 .. 52276513

Gene Structure 3656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGCTTACTGCCTTACTGGTGCCAAAGAATAGTTGGATTCCTGAGGAATTTATGGATTGCAATAAAAGTGAGGCAGTCAGGGCTAAGGAACTTGCCGAGAGGAAGCTCCTAGAAAGAAATTATGCTAGTGCAAAGAAGATTGCTTTGAAGGCTCAAAAGTTGTATCCTGAGCTTGGGGGTCTCTCTCAACTGTTGACAATAATAGATATTTATATCTGTGGAGAAAACAAAACTATTGGAGATGCGGATTGGTATGGAATACTTGGTGTGATTCCTTATGCCAAGTATGCACTCATTAGGAAACAGTATATAAAGTTGGCTCTCAGGCTTCATCCTGATAAAAACAAGTCTCCTGGTGCAGAAGGCGCATTTAAGCTGGTTTCTGAGGCGTGGAACTTGTTATCGGATAAGGCTAAGAGAGAAGAATACGAGAGACTAACATATTACCACAATAGGAACTTGGAAGAATCTCGTCGGGGAGCTCCATCCCATTCTGGGGGTCTTTCAGAACAACCTGGTGCAAATGCCTTTCAAAATGTTACAAGTAGTGTAACTACACATGCTACGGCGCAGCATGGTCCCATGCACTCATATGGAACACCTACTACTTTCTGGACGATTTGCAATCTGTGCAGGACATATTACCAGTATCTCAGGATGTATCTAAATCAAATTCTCATGTGCTCTACATGTCAGAAGGGGTTCAGTGCTATTGAAACAGCTGCACCTCCCGGTGTTTCCGAGTCATCTAGTAGTTCTTCTTGCCAGGAACATCACACTACAAGACGCCACGGTGCTGCTAGTGGTAGACCTTTTAATTCTGGAAGAAACAATGCCGTAGCTCGAAATTTGGGAAATAAGGGGTCTTTCGCTTCTAAATCAGTGAATAAGGCAACCTTCCAACAGAGCTTTTTCTCCAAAATGACTAGTCGCGGTAGCACTGTTGCATCAGGTTGTGCTGCAGCTGTGAGTGTGGCTCAGCAGGCAAATGAGAAAGTGAAGAGACAGCGAGAGGAGAGACAGTCAATCGCTGAATGGGAGAGGAATCAAAAGTTAATGGGGAATTCTTCATTCAAAAAGAAAAGAATTGAAGATCAACATCTTAATGGTTGCGAAGGATACATGGCTAATAATATCACCATAGGAAATGCTGGAGCTGACTTAGGAGTATCTGAATCAGGTTCAGGTAATGTTGGCACAAAAAGAATTTATGGTTTCTCTAGCATAGATAATATGCCTAACAGCAAGAGAGAGTTATCCTATCATGAAATGCAAAATATGCTGATGAAGAAAGCACGAACTGATATTTTCAAGGTTCTGAAGGAGCAGAACTCAGCTACTGCATCAAAGAAACAAGAGGAGGTGAAAGTAGATAAGAAACAGAAGAATGTGGTATATGCGGGGACAGAGGAAAACAGTGATAAGGGCGACGATGCCAGGTCGTCAATATTAACTAATGTTCCTGATCCTGATTTTCATAATTTTGATTTGGATCGAACTGAAAGTTCGTTTCAAGCAGAACAAGTCTGGGCCACATATGATGGTGATGGGATGCCTCGTTATTATGCTCGTATTCAGAATGTGATCTCCAGGAAGCCATTTAAATTGTGCATCAGCTGGCTTAATTCAAGAAGCAACTCTGAATTGGGTTCATTGGACTGGATAGGTTCTGGTTTTGCTAAAACCTGTGGGGATTTTAGGCCTGGCAAACGTCAAACATCCAAAACTTTAAATTCTTTCTGCAAGAAGGTTAGTTGGAAAAAAGTTGCACATGGAATGATTCGCATATTTCCTGGAAAGATGGAAGTCTGGGCTTTATATAGAAATTGGTCCCCTGATTGGAATCAGCATACCCCCAATGAAGTAATCAACAAATATGAGATGGTGGAAGTGCTGGAAGACTTTACTGAGGAACACGGTGTGTCTGTTCTTCCACTAATCAAGGTTGCTGGTTTCAGAACAGTGTTCCAAAAGTGCATGGACCCTAAAGCAGTTGGGAGAATTCCTAAAGAAGAGATGTTTCGGTTCTCGCACATTGTCCCCAGTCAATTGCTTACAGGTGCAGAAGCTCATAATGCTCCAAAAGGTTGCTTCGAATTGGATCCAGCAGCTATTCCTTTGCACCTCCTCGAGGGGATAACAGAAGATAATCAGGCAGCAATGGCAGAGAATGTTGGCAAAACAAAGGAAGAGGTGTTTCAAAGTGCCTCGACTAGAGAGGTAGATGCAGGAATGGAAGAAAGGGAGATTTCAGAAAGCGGAGGACAACCAATGGGGGTAGGCAATAGTGCATACCTAGTTGGCCAAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

771

Amino Acids

85.91

Weight (kDa)

8.93

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	83 - 144	2.5e-19	DnaJ domain
Zn_ribbon_20	PF23551	204 - 238	8.7e-09	Zinc beta-ribbon domain
DUF3444	PF11926	485 - 689	6.9e-71	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25560 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150 AT5G53150
fragaria_vesca	FvH4_7g31170
malus_domestica	MD01G1216400.v1.1 MD07G1286200.v1.1
prunus_persica	Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1 Prupe.2G308400_v2.0.a1
pyrus_communis	pycom01g22710 pycom07g25950
rosa_chinensis	RchiOBHm_Chr1g0380211
rosa_laevigata	RLG00000026319
rosa_multiflora	Rmu_sc0001232.1_g000026
rosa_roxburghii	Rroxscaffold_4G00279560
rosa_rugosa	Rorug01G0419000
rosa_samantha	Rh1AG443900 Rh1BG398900 Rh1CG412300 Rh1DG429500
rosa_wichuraiana	Rw1G038550 Rw1G038620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	2129
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	808
AccII	CGCG	1 cut(s)	933
AciI	CCGC	4 cut(s)	245, 933, 1400, 2259
AclWI	GGATC	4 cut(s)	1460, 1500, 2096, 2109
AcoI	YGGCCR	1 cut(s)	2302
AcsI	RAATTY	7 cut(s)	47, 672, 847, 1063, 1206, 1732, 2001
AcuI	CTGAAG	1 cut(s)	1340
AcyI	GRCGYC	1 cut(s)	787
AdeI	CACNNNGTG	1 cut(s)	1921
AfiI	CCNNNNNNNGG	5 cut(s)	173, 495, 496, 1839, 2131
AflIII	ACRYGT	1 cut(s)	689
AgsI	TTSAA	9 cut(s)	148, 533, 716, 1075, 1091, 1312, 1514, 1629, 2201
AhlI	ACTAGT	1 cut(s)	926
AjnI	CCWGG	7 cut(s)	352, 514, 765, 1436, 1589, 1702, 1792
Alw21I	GWGCWC	2 cut(s)	484, 686
Alw26I	GTCTC	5 cut(s)	185, 354, 427, 997, 1012
AlwI	GGATC	4 cut(s)	1460, 1500, 2096, 2109
AlwNI	CAGNNNCTG	1 cut(s)	1340
Ama87I	CYCGRG	1 cut(s)	2129
AoxI	GGCC	3 cut(s)	1530, 1700, 2302
ApeKI	GCWGC	7 cut(s)	571, 722, 797, 959, 962, 2108, 2156
ApoI	RAATTY	7 cut(s)	47, 672, 847, 1063, 1206, 1732, 2001
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	368, 571
AspS9I	GGNCC	4 cut(s)	578, 1530, 1830, 1981
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	3 cut(s)	1129, 1375, 1556
AsuII	TTCGAA	1 cut(s)	2094
AvaI	CYCGRG	1 cut(s)	2129
AvaII	GGWCC	3 cut(s)	578, 1830, 1981
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	2304
BamHI	GGATCC	1 cut(s)	2101
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	1905
Bbv12I	GWGCWC	2 cut(s)	484, 686
BbvI	GCAGC	7 cut(s)	583, 709, 784, 946, 974, 2120, 2168
BccI	CCATC	5 cut(s)	493, 1535, 1541, 1795, 1876
BceAI	ACGGC	2 cut(s)	582, 821
BciT130I	CCWGG	7 cut(s)	354, 516, 767, 1438, 1591, 1704, 1794
BciVI	GTATCC	2 cut(s)	174, 1112
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	5 cut(s)	185, 354, 427, 997, 1012
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	8 cut(s)	110, 126, 750, 801, 927, 1221, 2214, 2297
BfmI	CTRYAG	1 cut(s)	960
BfuI	GTATCC	2 cut(s)	174, 1112
BisI	GCNGC	7 cut(s)	572, 723, 798, 960, 963, 2109, 2157
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	7 cut(s)	573, 724, 799, 961, 964, 2110, 2158
Bme1390I	CCNGG	8 cut(s)	354, 516, 732, 767, 1438, 1591, 1704, 1794
Bme18I	GGWCC	3 cut(s)	578, 1830, 1981
BmeT110I	CYCGRG	1 cut(s)	2129
BmgT120I	GGNCC	4 cut(s)	578, 1530, 1830, 1981
BmiI	GGNNCC	5 cut(s)	21, 580, 1832, 1983, 2103
BmrFI	CCNGG	8 cut(s)	354, 516, 732, 767, 1438, 1591, 1704, 1794
BmrI	ACTGGG	1 cut(s)	2037
BmsI	GCATC	7 cut(s)	232, 956, 1352, 1423, 1542, 1620, 2215
BmuI	ACTGGG	1 cut(s)	2037
BpiI	GAAGAC	1 cut(s)	1905
BplI	GAGNNNNNCTC	4 cut(s)	961, 993, 1316, 1348
BpmI	CTGGAG	2 cut(s)	1173, 1573
Bpu10I	CCTNAGC	2 cut(s)	84, 168
Bpu1102I	GCTNAGC	1 cut(s)	978
Bpu14I	TTCGAA	1 cut(s)	2094
BpuMI	CCSGG	1 cut(s)	732
BsaBI	GATNNNNATC	3 cut(s)	1098, 1491, 1842
BsaHI	GRCGYC	1 cut(s)	787
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	790, 2305
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 495, 496, 1839, 2131
Bse1I	ACTGG	4 cut(s)	21, 646, 1664, 2043
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	2166
Bse8I	GATNNNNATC	3 cut(s)	1098, 1491, 1842
BseBI	CCWGG	7 cut(s)	354, 516, 767, 1438, 1591, 1704, 1794
BseDI	CCNNGG	2 cut(s)	790, 2305
BseGI	GGATG	5 cut(s)	331, 485, 663, 1557, 1718
BseJI	GATNNNNATC	3 cut(s)	1098, 1491, 1842
BseLI	CCNNNNNNNGG	5 cut(s)	173, 495, 496, 1839, 2131
BseMI	GCAATG	1 cut(s)	2166
BseMII	CTCAG	8 cut(s)	33, 159, 337, 375, 667, 992, 1347, 1899
BseNI	ACTGG	4 cut(s)	21, 646, 1664, 2043
BseRI	GAGGAG	3 cut(s)	1028, 1373, 2117
BseXI	GCAGC	7 cut(s)	583, 709, 784, 946, 974, 2120, 2168
BsgI	GTGCAG	4 cut(s)	378, 652, 708, 2082
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	3 cut(s)	1532, 1702, 2304
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	484, 686
BsiHKCI	CYCGRG	1 cut(s)	2129
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	4 cut(s)	564, 1417, 1816, 2024
BslI	CCNNNNNNNGG	5 cut(s)	173, 495, 496, 1839, 2131
BsmAI	GTCTC	5 cut(s)	185, 354, 427, 997, 1012
BsmFI	GGGAC	4 cut(s)	564, 1417, 1816, 2024
BsnI	GGCC	3 cut(s)	1532, 1702, 2304
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	2129
Bsp119I	TTCGAA	1 cut(s)	2094
Bsp1286I	GDGCHC	2 cut(s)	484, 686
Bsp143I	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
Bsp1720I	GCTNAGC	1 cut(s)	978
BspACI	CCGC	4 cut(s)	245, 933, 1400, 2259
BspANI	GGCC	3 cut(s)	1532, 1702, 2304
BspCNI	CTCAG	8 cut(s)	34, 160, 336, 376, 666, 991, 1346, 1900
BspFNI	CGCG	1 cut(s)	933
BspHI	TCATGA	1 cut(s)	1264
BspLI	GGNNCC	5 cut(s)	21, 580, 1832, 1983, 2103
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	4 cut(s)	1460, 1500, 2096, 2109
BspT104I	TTCGAA	1 cut(s)	2094
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	2166
BsrI	ACTGG	4 cut(s)	21, 646, 1664, 2043
BssECI	CCNNGG	2 cut(s)	790, 2305
BssMI	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
BssNI	GRCGYC	1 cut(s)	787
BssT1I	CCWWGG	1 cut(s)	2305
Bst2UI	CCWGG	7 cut(s)	354, 516, 767, 1438, 1591, 1704, 1794
Bst4CI	ACNGT	8 cut(s)	192, 306, 794, 943, 1023, 1418, 1919, 1963
Bst6I	CTCTTC	3 cut(s)	995, 2007, 2184
BstACI	GRCGYC	1 cut(s)	787
BstAPI	GCANNNNNTGC	2 cut(s)	630, 1279
BstBI	TTCGAA	1 cut(s)	2094
BstC8I	GCNNGC	2 cut(s)	984, 1619
BstDSI	CCRYGG	1 cut(s)	790
BstENI	CCTNNNNNAGG	1 cut(s)	2129
BstF5I	GGATG	5 cut(s)	331, 485, 663, 1557, 1718
BstFNI	CGCG	1 cut(s)	933
BstHHI	GCGC	2 cut(s)	368, 571
BstKTI	GATC	5 cut(s)	1096, 1468, 1495, 1587, 2104
BstMAI	GTCTC	5 cut(s)	185, 354, 427, 997, 1012
BstMBI	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
BstMWI	GCNNNNNNNGC	9 cut(s)	80, 149, 287, 365, 630, 983, 1279, 2075, 2162
BstNI	CCWGG	7 cut(s)	354, 516, 767, 1438, 1591, 1704, 1794
BstNSI	RCATGY	2 cut(s)	563, 693
BstSCI	CCNGG	8 cut(s)	352, 514, 730, 765, 1436, 1589, 1702, 1792
BstSFI	CTRYAG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	7 cut(s)	583, 709, 784, 946, 974, 2120, 2168
BstV2I	GAAGAC	1 cut(s)	1905
BstX2I	RGATCY	1 cut(s)	2101
BstYI	RGATCY	1 cut(s)	2101
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	2 cut(s)	174, 1112
BsuRI	GGCC	3 cut(s)	1532, 1702, 2304
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	5 cut(s)	331, 485, 663, 1557, 1718
BtsIMutI	CAGTG	5 cut(s)	712, 888, 939, 1423, 1968
Cac8I	GCNNGC	2 cut(s)	984, 1619
CaiI	CAGNNNCTG	1 cut(s)	1340
CciI	TCATGA	1 cut(s)	1264
CfoI	GCGC	2 cut(s)	368, 571
Cfr13I	GGNCC	4 cut(s)	578, 1530, 1830, 1981
CseI	GACGC	1 cut(s)	795
CsiI	ACCWGGT	1 cut(s)	514
CviAII	CATG	9 cut(s)	560, 575, 583, 679, 690, 1123, 1265, 1772, 1978
DpnI	GATC	5 cut(s)	1095, 1467, 1494, 1586, 2103
DpnII	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
DraI	TTTAAA	2 cut(s)	1603, 1731
DraIII	CACNNNGTG	1 cut(s)	1921
EaeI	YGGCCR	1 cut(s)	2302
Eam1104I	CTCTTC	3 cut(s)	995, 2007, 2184
EarI	CTCTTC	3 cut(s)	995, 2007, 2184
Ecl136II	GAGCTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	2305
Eco147I	AGGCCT	1 cut(s)	1702
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	3 cut(s)	578, 1830, 1981
Eco53kI	GAGCTC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	1340
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	2129
EcoICRI	GAGCTC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	2129
EcoRI	GAATTC	2 cut(s)	1063, 2001
EcoRII	CCWGG	7 cut(s)	352, 514, 765, 1436, 1589, 1702, 1792
EcoT14I	CCWWGG	1 cut(s)	2305
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	2305
FaeI	CATG	9 cut(s)	563, 578, 586, 682, 693, 1126, 1268, 1775, 1981
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FaqI	GGGAC	4 cut(s)	564, 1417, 1816, 2024
FatI	CATG	9 cut(s)	559, 574, 582, 678, 689, 1122, 1264, 1771, 1977
FauI	CCCGC	1 cut(s)	1393
FauNDI	CATATG	2 cut(s)	592, 1537
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	7 cut(s)	572, 723, 798, 960, 963, 2109, 2157
FokI	GGATG	5 cut(s)	318, 472, 670, 1564, 1705
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	7 cut(s)	572, 723, 798, 960, 963, 2109, 2157
FspBI	CTAG	8 cut(s)	110, 126, 750, 801, 927, 1221, 2214, 2297
GlaI	GCGC	2 cut(s)	367, 570
GluI	GCNGC	7 cut(s)	572, 723, 798, 960, 963, 2109, 2157
GsuI	CTGGAG	2 cut(s)	1173, 1573
HaeIII	GGCC	3 cut(s)	1532, 1702, 2304
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	1 cut(s)	795
HhaI	GCGC	2 cut(s)	368, 571
Hin1I	GRCGYC	1 cut(s)	787
Hin1II	CATG	9 cut(s)	563, 578, 586, 682, 693, 1126, 1268, 1775, 1981
Hin6I	GCGC	2 cut(s)	366, 569
HinP1I	GCGC	2 cut(s)	366, 569
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	8 cut(s)	37, 271, 467, 743, 1045, 1175, 1780, 1843
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	3 cut(s)	1129, 1375, 1556
Hpy166II	GTNNAC	2 cut(s)	195, 809
Hpy8I	GTNNAC	2 cut(s)	195, 809
Hpy99I	CGWCG	2 cut(s)	477, 1433
HpyAV	CCTTC	7 cut(s)	142, 356, 691, 907, 1109, 1315, 1741
HpyCH4III	ACNGT	8 cut(s)	192, 306, 794, 943, 1023, 1418, 1919, 1963
HpyCH4IV	ACGT	1 cut(s)	1711
HpyF10VI	GCNNNNNNNGC	9 cut(s)	80, 149, 287, 365, 630, 983, 1279, 2075, 2162
HpySE526I	ACGT	1 cut(s)	1711
Hsp92I	GRCGYC	1 cut(s)	787
Hsp92II	CATG	9 cut(s)	563, 578, 586, 682, 693, 1126, 1268, 1775, 1981
HspAI	GCGC	2 cut(s)	366, 569
Kzo9I	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
LmnI	GCTCC	6 cut(s)	111, 479, 487, 1154, 1324, 2083
Lsp1109I	GCAGC	7 cut(s)	583, 709, 784, 946, 974, 2120, 2168
LweI	GCATC	7 cut(s)	232, 956, 1352, 1423, 1542, 1620, 2215
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	8 cut(s)	110, 126, 750, 801, 927, 1221, 2214, 2297
MaeII	ACGT	1 cut(s)	1711
MaeIII	GTNAC	2 cut(s)	538, 550
MalI	GATC	5 cut(s)	1095, 1467, 1494, 1586, 2103
MboI	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
MfeI	CAATTG	1 cut(s)	2048
MflI	RGATCY	1 cut(s)	2101
MhlI	GDGCHC	2 cut(s)	484, 686
MlsI	TGGCCA	1 cut(s)	2304
MluNI	TGGCCA	1 cut(s)	2304
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	3 cut(s)	14, 925, 1736
Mox20I	TGGCCA	1 cut(s)	2304
MroXI	GAANNNNTTC	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	2304
MseI	TTAA	8 cut(s)	372, 816, 1055, 1104, 1451, 1602, 1623, 1730
MslI	CAYNNNNRTG	2 cut(s)	591, 1104
Msp20I	TGGCCA	1 cut(s)	2304
MspA1I	CMGCKG	3 cut(s)	722, 965, 1617
MspI	CCGG	1 cut(s)	732
MspR9I	CCNGG	8 cut(s)	354, 516, 732, 767, 1438, 1591, 1704, 1794
MunI	CAATTG	1 cut(s)	2048
MvaI	CCWGG	7 cut(s)	354, 516, 767, 1438, 1591, 1704, 1794
MvnI	CGCG	1 cut(s)	933
MwoI	GCNNNNNNNGC	9 cut(s)	80, 149, 287, 365, 630, 983, 1279, 2075, 2162
NciI	CCSGG	1 cut(s)	732
NdeI	CATATG	2 cut(s)	592, 1537
NdeII	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
NlaIII	CATG	9 cut(s)	563, 578, 586, 682, 693, 1126, 1268, 1775, 1981
NlaIV	GGNNCC	5 cut(s)	21, 580, 1832, 1983, 2103
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	2 cut(s)	563, 693
NspV	TTCGAA	1 cut(s)	2094
PaeR7I	CTCGAG	1 cut(s)	2129
PagI	TCATGA	1 cut(s)	1264
PceI	AGGCCT	1 cut(s)	1702
PciI	ACATGT	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	7 cut(s)	37, 271, 467, 1045, 1175, 1780, 1843
PfoI	TCCNGGA	2 cut(s)	1589, 1792
PkrI	GCNGC	7 cut(s)	573, 724, 799, 961, 964, 2110, 2158
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PscI	ACATGT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	484
Psp6I	CCWGG	7 cut(s)	352, 514, 765, 1436, 1589, 1702, 1792
PspGI	CCWGG	7 cut(s)	352, 514, 765, 1436, 1589, 1702, 1792
PspN4I	GGNNCC	5 cut(s)	21, 580, 1832, 1983, 2103
PspPI	GGNCC	4 cut(s)	578, 1530, 1830, 1981
PspXI	VCTCGAGB	1 cut(s)	2129
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
PstI	CTGCAG	1 cut(s)	964
PstNI	CAGNNNCTG	1 cut(s)	1340
PsuI	RGATCY	1 cut(s)	2101
PvuII	CAGCTG	3 cut(s)	722, 965, 1617
RseI	CAYNNNNRTG	2 cut(s)	591, 1104
SacI	GAGCTC	1 cut(s)	484
SaqAI	TTAA	8 cut(s)	372, 816, 1055, 1104, 1451, 1602, 1623, 1730
SatI	GCNGC	7 cut(s)	572, 723, 798, 960, 963, 2109, 2157
Sau3AI	GATC	5 cut(s)	1093, 1465, 1492, 1584, 2101
Sau96I	GGNCC	4 cut(s)	578, 1530, 1830, 1981
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	8 cut(s)	354, 516, 732, 767, 1438, 1591, 1704, 1794
SduI	GDGCHC	2 cut(s)	484, 686
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	7 cut(s)	232, 956, 1352, 1423, 1542, 1620, 2215
SfcI	CTRYAG	1 cut(s)	960
Sfr274I	CTCGAG	1 cut(s)	2129
SfuI	TTCGAA	1 cut(s)	2094
SinI	GGWCC	3 cut(s)	578, 1830, 1981
SlaI	CTCGAG	1 cut(s)	2129
SmiI	ATTTAAAT	1 cut(s)	1603
SmiMI	CAYNNNNRTG	2 cut(s)	591, 1104
SmlI	CTYRAG	1 cut(s)	2129
SmoI	CTYRAG	1 cut(s)	2129
SpeI	ACTAGT	1 cut(s)	926
SseBI	AGGCCT	1 cut(s)	1702
SsiI	CCGC	4 cut(s)	245, 933, 1400, 2259
SspI	AATATT	1 cut(s)	1449
SspMI	CTAG	8 cut(s)	110, 126, 750, 801, 927, 1221, 2214, 2297
SstI	GAGCTC	1 cut(s)	484
StuI	AGGCCT	1 cut(s)	1702
StyD4I	CCNGG	8 cut(s)	352, 514, 730, 765, 1436, 1589, 1702, 1792
StyI	CCWWGG	1 cut(s)	2305
SwaI	ATTTAAAT	1 cut(s)	1603
TaaI	ACNGT	8 cut(s)	192, 306, 794, 943, 1023, 1418, 1919, 1963
TaiI	ACGT	1 cut(s)	1714
TaqI	TCGA	5 cut(s)	844, 1495, 2094, 2130, 2210
TfiI	GAWTC	7 cut(s)	37, 271, 467, 1045, 1175, 1780, 1843
Tru1I	TTAA	8 cut(s)	372, 816, 1055, 1104, 1451, 1602, 1623, 1730
Tru9I	TTAA	8 cut(s)	372, 816, 1055, 1104, 1451, 1602, 1623, 1730
TscAI	CASTG	5 cut(s)	712, 888, 946, 1423, 1968
TseI	GCWGC	7 cut(s)	571, 722, 797, 959, 962, 2108, 2156
TspDTI	ATGAA	7 cut(s)	320, 1059, 1281, 1301, 1466, 1641, 1875
TspRI	CASTG	5 cut(s)	712, 888, 946, 1423, 1968
VpaK11BI	GGWCC	3 cut(s)	578, 1830, 1981
XagI	CCTNNNNNAGG	1 cut(s)	2129
XapI	RAATTY	7 cut(s)	47, 672, 847, 1063, 1206, 1732, 2001
XceI	RCATGY	2 cut(s)	563, 693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	2129
XmiI	GTMKAC	1 cut(s)	808
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	8 cut(s)	110, 126, 750, 801, 927, 1221, 2214, 2297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.