Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012375

Physical Location & Seq

Genomic Coordinates Reverse (-)

22900648 .. 22902231

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAACAACACCAAAATGTAAATATGGCCCATCTGCTAGCAAGCTATCCCAACATATCAGAACTCTCCTATGGATTGACTACAGTTTCTAGACCAGCTAGGAGGACTAGATTGATCACAAATTGTGTAGTGCATTGCTCCTCCAGTAGTAGTAGCAGTGGTAGCTCATCAACTGAGGAAGTGGGTTTTGTAGGGAGTGGAAAGTTTGGTATTGATAGTACGGGAGAGTTCAAGTACTTGGTGAGTGAATATGGTTGGAAGGTCAGGAGTTTGTTTAGAAATGGAGATGAGGTAAGGCAGGCAGCTCAAGTTCAAGCTGAAGCATTTCATGAACCTGTGTTTCTCTTCAATGATTTCTTCTTCCAGTTCTTCCAGGCTGAAGTGTTATCCGGGCTTGTATATAAACTTCGGAGCTCTCCCCCAAATAGGTATGCCTGTTTGGTAGCAGAGCCTACACTCATCGACACTTCAGAGTCGCAAGAGCTTGTGGGCGTCGTTGATCTCACAGCATCAAGAGACCAGAATGTACTAGAGCATCTCCCACCTGATGCAGATGAGTATCTTTATGTGTCCGGCATAGCTGTTCTCAAGAGTTTCAGGAGGAAGAAAGTAGCCACTGCTTTACTAAAAGCTTGTGACATGCTCTCAGCTGAGTGGGGATTTCAGTATCTTGCTCTCCGAGCTTATGAAGACGATTTTGGTGCCCGGGAGTTGTATGCAAATGCCGGTTACCGGGTTGTCTCTGGTGATCCGCCGTGGATGAGTACTTGGATTGGAAGAAAACGCCGTGTTCTTCTGATCAAACAGATTCCGACTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

7.67

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72030
fragaria_vesca	FvH4_7g31720 FvH4_7g31720
malus_domestica	MD01G1220200.v1.1
prunus_persica	Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380911
rosa_laevigata	RLG00000026263
rosa_multiflora	Rmu_co8437397.1_g000001 Rmu_sc0002962.1_g000021 Rmu_sc0004623.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278970
rosa_rugosa	Rorug01G0425400 Rorug01G0425500
rosa_samantha	Rh1AG449200 Rh1BG404900 Rh1CG418900 Rh1DG435300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	701
AciI	CCGC	1 cut(s)	752
AclWI	GGATC	1 cut(s)	743
AcuI	CTGAAG	3 cut(s)	339, 399, 453
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	4 cut(s)	220, 236, 528, 766
AfiI	CCNNNNNNNGG	2 cut(s)	426, 732
AgsI	TTSAA	3 cut(s)	232, 314, 349
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	510, 745
AlwI	GGATC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	705
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	4 cut(s)	391, 706, 707, 734
AsuHPI	GGTGA	2 cut(s)	253, 758
AsuNHI	GCTAGC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	705
BaeGI	GKGCMC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	739, 771
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	2 cut(s)	114, 798
BcnI	CCSGG	4 cut(s)	391, 706, 707, 734
BcoDI	GTCTC	2 cut(s)	510, 745
BfaI	CTAG	5 cut(s)	38, 90, 99, 108, 530
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmcAI	AGTACT	2 cut(s)	236, 766
Bme1390I	CCNGG	5 cut(s)	374, 391, 706, 707, 734
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	5 cut(s)	374, 391, 706, 707, 734
BmsI	GCATC	3 cut(s)	518, 538, 544
BmtI	GCTAGC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	291, 572
BpuMI	CCSGG	4 cut(s)	391, 706, 707, 734
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	705, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 732
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	144, 364
Bse3DI	GCAATG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	705, 755
BseGI	GGATG	1 cut(s)	765
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	426, 732
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	165, 642, 660
BseNI	ACTGG	2 cut(s)	144, 364
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	5 cut(s)	390, 573, 706, 726, 733
BslI	CCNNNNNNNGG	2 cut(s)	426, 732
BsmAI	GTCTC	2 cut(s)	510, 745
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	416, 706
Bsp143I	GATC	4 cut(s)	114, 499, 748, 798
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	3 cut(s)	166, 643, 659
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	703
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	144, 364
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	705, 755
BssMI	GATC	4 cut(s)	114, 499, 748, 798
BssNI	GRCGYC	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	492
BstC8I	GCNNGC	3 cut(s)	39, 43, 300
BstDEI	CTNAG	3 cut(s)	174, 646, 651
BstDSI	CCRYGG	1 cut(s)	755
BstEII	GGTNACC	1 cut(s)	728
BstF5I	GGATG	1 cut(s)	765
BstKTI	GATC	4 cut(s)	117, 502, 751, 801
BstMAI	GTCTC	2 cut(s)	510, 745
BstMBI	GATC	4 cut(s)	114, 499, 748, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 680
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	643
BstPI	GGTNACC	1 cut(s)	728
BstSCI	CCNGG	5 cut(s)	372, 389, 704, 705, 732
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	1 cut(s)	765
BtsI	GCAGTG	2 cut(s)	163, 615
BtsIMutI	CAGTG	2 cut(s)	163, 615
Cac8I	GCNNGC	3 cut(s)	39, 43, 300
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	1 cut(s)	28
Cfr9I	CCCGGG	1 cut(s)	705
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	219, 235, 527, 765
CviAII	CATG	2 cut(s)	329, 640
CviQI	GTAC	4 cut(s)	219, 235, 527, 765
DdeI	CTNAG	3 cut(s)	174, 646, 651
DpnI	GATC	4 cut(s)	116, 501, 750, 800
DpnII	GATC	4 cut(s)	114, 499, 748, 798
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EciI	GGCGGA	1 cut(s)	741
Ecl136II	GAGCTC	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	3 cut(s)	339, 399, 453
Eco88I	CYCGRG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	414
EcoO65I	GGTNACC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	2 cut(s)	332, 643
FatI	CATG	2 cut(s)	328, 639
FbaI	TGATCA	2 cut(s)	114, 798
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	5 cut(s)	38, 90, 99, 108, 530
GluI	GCNGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	5 cut(s)	390, 573, 706, 726, 733
HgaI	GACGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	332, 643
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	3 cut(s)	473, 808, 814
HpaII	CCGG	5 cut(s)	390, 573, 706, 726, 733
HphI	GGTGA	2 cut(s)	253, 758
Hpy188I	TCNGA	6 cut(s)	61, 411, 472, 680, 798, 813
Hpy188III	TCNNGA	6 cut(s)	90, 265, 329, 513, 589, 598
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	133, 551, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 680
HpyF3I	CTNAG	3 cut(s)	174, 646, 651
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	332, 643
Ksp22I	TGATCA	2 cut(s)	114, 798
Kzo9I	GATC	4 cut(s)	114, 499, 748, 798
LmnI	GCTCC	2 cut(s)	143, 411
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	3 cut(s)	518, 538, 544
MaeI	CTAG	5 cut(s)	38, 90, 99, 108, 530
MaeIII	GTNAC	2 cut(s)	635, 728
MalI	GATC	4 cut(s)	116, 501, 750, 800
MboI	GATC	4 cut(s)	114, 499, 748, 798
MboII	GAAGA	8 cut(s)	337, 349, 352, 361, 616, 701, 785, 789
MhlI	GDGCHC	2 cut(s)	416, 706
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	482, 808
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	96, 151, 169, 283, 594
MroXI	GAANNNNTTC	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	5 cut(s)	390, 573, 706, 726, 733
MspR9I	CCNGG	5 cut(s)	374, 391, 706, 707, 734
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	162, 680
NciI	CCSGG	4 cut(s)	391, 706, 707, 734
NdeII	GATC	4 cut(s)	114, 499, 748, 798
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	332, 643
NlaIV	GGNNCC	1 cut(s)	703
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	1 cut(s)	643
PagI	TCATGA	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	808
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	481, 808
PpsI	GAGTC	2 cut(s)	481, 808
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	220, 236, 528, 766
RsaNI	GTAC	4 cut(s)	219, 235, 527, 765
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	416
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	4 cut(s)	114, 499, 748, 798
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	2 cut(s)	236, 766
SchI	GAGTC	2 cut(s)	482, 808
ScrFI	CCNGG	5 cut(s)	374, 391, 706, 707, 734
SduI	GDGCHC	2 cut(s)	416, 706
SfaNI	GCATC	3 cut(s)	518, 538, 544
SfcI	CTRYAG	1 cut(s)	81
SmaI	CCCGGG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	2 cut(s)	306, 587
SmoI	CTYRAG	2 cut(s)	306, 587
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	752
SspMI	CTAG	5 cut(s)	38, 90, 99, 108, 530
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	5 cut(s)	372, 389, 704, 705, 732
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	462, 817
TasI	AATT	1 cut(s)	121
TatI	WGTACW	3 cut(s)	234, 526, 764
TfiI	GAWTC	1 cut(s)	808
TscAI	CASTG	2 cut(s)	163, 622
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	17, 317, 345, 702
TspMI	CCCGGG	1 cut(s)	705
TspRI	CASTG	2 cut(s)	163, 622
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	643
XmaI	CCCGGG	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	5 cut(s)	38, 90, 99, 108, 530
ZrmI	AGTACT	2 cut(s)	236, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.