Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0012375

Physical Location & Seq

Genomic Coordinates Reverse (-)

94293 .. 96407

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggaaaagaaaacgggtaagacgagctcaagctatgtgttgaaaacacgttggaatgaagttgccgataaaaacaatctcaaggaaaaagacgtagtacaagtttggtcattccgggatgtgggaaacaaccttcactttgctattgttttggttaagaagggtgagagaaagggtggtgaacatagtagtagtcgagggtatagccagccgccttcgctatcaacaacaccgcgtgatattgttgatggtgaaagaagaagtggtagtggtcaaggaacagaatcaaaggaagaagggatgataggagttaatagcaatgttgagagtaataaccacaagttatggccactagtgcccacatcctatctctccatctacaacatgtttcagtcattcaagaaacaaagaacacaaaatgtaaatatggccaatttgctagcaagctatcccaacatatcagaactctcatatggattaattacagtttctagaccagctaggaggactagattgatcaatggtgagggacatattgggtatgtagagattaagaccacaaattgtgtagtgcattgctccagtagtagtagtggtagctcaagtagtagtacctcatcaacggaggaagtgggttttgtagggagtggaaagtttggtattgatagtaagggagagttcaagtacttggtgagtgagtatggatggaaggtcaggagtttgtttagaaatggagatgaggtaaggaaggcagctcaagttcaagctgaagcatttcatgaacctgtgtttctcttcaatgatctgttcttccaattcttccaggctgaagtgttatctgggcttgtatataaacttaggaactcacccccaaacaggtatgcttgtttagttgctgagcctacgcccatggacacttccgagtcacaagaactcgtgggcgtcgtggatctcacggcttcaagagaccagaatgtactagagcatctcccacctgatgcagatgagtttctttatgtgtccggcatagctgttctcaagagttttaggaggaagaaagtagccactgttttactaaaagcttgtgacatgctctcagctgaatggggatttcagtatcttgctctccgggcttatgaagacgattttggtgcccgggagttgtatgcaaatgccggttaccgggttgtctccagtgatccgccgtgggggggggggggggggggtgtgtgtctaaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

414

Amino Acids

45.85

Weight (kDa)

8.41

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72030
fragaria_vesca	FvH4_7g31720 FvH4_7g31720
malus_domestica	MD01G1220200.v1.1
prunus_persica	Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380911
rosa_laevigata	RLG00000026263
rosa_multiflora	Rmu_co8437397.1_g000001 Rmu_sc0002962.1_g000021 Rmu_sc0004623.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278970
rosa_rugosa	Rorug01G0425400 Rorug01G0425500
rosa_samantha	Rh1AG449200 Rh1BG404900 Rh1CG418900 Rh1DG435300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1151
AccII	CGCG	1 cut(s)	235
AciI	CCGC	3 cut(s)	212, 233, 1202
AclWI	GGATC	2 cut(s)	957, 1193
AcoI	YGGCCR	2 cut(s)	347, 429
AcuI	CTGAAG	2 cut(s)	789, 849
AcyI	GRCGYC	1 cut(s)	942
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	4 cut(s)	99, 613, 686, 978
AfiI	CCNNNNNNNGG	5 cut(s)	121, 876, 1182, 1208, 1211
AflIII	ACRYGT	2 cut(s)	47, 384
AgsI	TTSAA	6 cut(s)	43, 400, 682, 764, 799, 963
AhlI	ACTAGT	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	822
AjuI	GAANNNNNNNTTGG	2 cut(s)	1131, 1163
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	960, 1195
AlwI	GGATC	2 cut(s)	957, 1193
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	347, 429
ApeKI	GCWGC	1 cut(s)	752
AseI	ATTAAT	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	774
AsuC2I	CCSGG	5 cut(s)	116, 1130, 1156, 1157, 1184
AsuHPI	GGTGA	6 cut(s)	176, 191, 263, 536, 703, 858
AsuNHI	GCTAGC	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	1155
BaeGI	GKGCMC	2 cut(s)	360, 1156
BalI	TGGCCA	2 cut(s)	349, 431
BanI	GGYRCC	1 cut(s)	1151
BanII	GRGCYC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	935
BbsI	GAAGAC	1 cut(s)	1146
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	3 cut(s)	242, 383, 699
BceAI	ACGGC	2 cut(s)	972, 1189
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciT130I	CCWGG	1 cut(s)	824
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	5 cut(s)	116, 1130, 1156, 1157, 1184
BcoDI	GTCTC	2 cut(s)	960, 1195
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	6 cut(s)	353, 440, 492, 501, 510, 980
BisI	GCNGC	2 cut(s)	212, 753
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	2 cut(s)	213, 754
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	6 cut(s)	116, 824, 1130, 1156, 1157, 1184
BmeT110I	CYCGRG	1 cut(s)	1155
BmiI	GGNNCC	1 cut(s)	1153
BmrFI	CCNGG	6 cut(s)	116, 824, 1130, 1156, 1157, 1184
BmsI	GCATC	2 cut(s)	988, 994
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	1146
BpmI	CTGGAG	2 cut(s)	565, 1177
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	5 cut(s)	13, 65, 586, 741, 1022
BpuMI	CCSGG	5 cut(s)	116, 1130, 1156, 1157, 1184
BsaHI	GRCGYC	1 cut(s)	942
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	909, 1155, 1205
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 876, 1182, 1208, 1211
Bse118I	RCCGGY	1 cut(s)	1175
Bse1I	ACTGG	2 cut(s)	582, 1194
Bse3DI	GCAATG	2 cut(s)	325, 574
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	3 cut(s)	909, 1155, 1205
BseGI	GGATG	4 cut(s)	124, 306, 362, 710
BseLI	CCNNNNNNNGG	5 cut(s)	121, 876, 1182, 1208, 1211
BseMI	GCAATG	2 cut(s)	325, 574
BseMII	CTCAG	2 cut(s)	888, 1110
BseNI	ACTGG	2 cut(s)	582, 1194
BseSI	GKGCMC	2 cut(s)	360, 1156
BseXI	GCAGC	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	349, 431
BshNI	GGYRCC	1 cut(s)	1151
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	6 cut(s)	115, 1023, 1129, 1156, 1176, 1183
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	5 cut(s)	121, 876, 1182, 1208, 1211
BsmAI	GTCTC	2 cut(s)	960, 1195
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	349, 431
Bso31I	GGTCTC	1 cut(s)	960
BsoBI	CYCGRG	1 cut(s)	1155
Bsp1286I	GDGCHC	3 cut(s)	29, 360, 1156
Bsp143I	GATC	4 cut(s)	516, 802, 949, 1198
Bsp1720I	GCTNAGC	1 cut(s)	897
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	3 cut(s)	212, 233, 1202
BspANI	GGCC	2 cut(s)	349, 431
BspCNI	CTCAG	2 cut(s)	889, 1109
BspFNI	CGCG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	1153
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	957, 1193
BspT107I	GGYRCC	1 cut(s)	1151
BspTNI	GGTCTC	1 cut(s)	960
BsrDI	GCAATG	2 cut(s)	325, 574
BsrFI	RCCGGY	1 cut(s)	1175
BsrI	ACTGG	2 cut(s)	582, 1194
BssAI	RCCGGY	1 cut(s)	1175
BssECI	CCNNGG	3 cut(s)	909, 1155, 1205
BssMI	GATC	4 cut(s)	516, 802, 949, 1198
BssNI	GRCGYC	1 cut(s)	942
BssSI	CACGAG	1 cut(s)	935
BssT1I	CCWWGG	1 cut(s)	909
Bst2BI	CACGAG	1 cut(s)	935
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	2 cut(s)	487, 1069
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	942
BstC8I	GCNNGC	3 cut(s)	209, 441, 445
BstDEI	CTNAG	3 cut(s)	857, 897, 1096
BstDSI	CCRYGG	2 cut(s)	909, 1205
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	4 cut(s)	124, 306, 362, 710
BstFNI	CGCG	1 cut(s)	235
BstKTI	GATC	4 cut(s)	519, 805, 952, 1201
BstMAI	GTCTC	2 cut(s)	960, 1195
BstMBI	GATC	4 cut(s)	516, 802, 949, 1198
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 355, 1130
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	2 cut(s)	388, 1093
BstPI	GGTNACC	1 cut(s)	1178
BstSCI	CCNGG	6 cut(s)	114, 822, 1128, 1154, 1155, 1182
BstSLI	GKGCMC	2 cut(s)	360, 1156
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	764
BstV2I	GAAGAC	1 cut(s)	1146
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	2 cut(s)	349, 431
BtgI	CCRYGG	2 cut(s)	909, 1205
BtsCI	GGATG	4 cut(s)	124, 306, 362, 710
BtsIMutI	CAGTG	2 cut(s)	1065, 1201
Cac8I	GCNNGC	3 cut(s)	209, 441, 445
CciI	TCATGA	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	1175
Cfr9I	CCCGGG	1 cut(s)	1155
CseI	GACGC	1 cut(s)	931
Csp6I	GTAC	4 cut(s)	98, 612, 685, 977
CviAII	CATG	4 cut(s)	385, 779, 910, 1090
CviQI	GTAC	4 cut(s)	98, 612, 685, 977
DdeI	CTNAG	3 cut(s)	857, 897, 1096
DpnI	GATC	4 cut(s)	518, 804, 951, 1200
DpnII	GATC	4 cut(s)	516, 802, 949, 1198
DraIII	CACNNNGTG	1 cut(s)	236
EaeI	YGGCCR	2 cut(s)	347, 429
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
EciI	GGCGGA	1 cut(s)	1191
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	909
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	960
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	789, 849
Eco88I	CYCGRG	1 cut(s)	1155
Eco91I	GGTNACC	1 cut(s)	1178
EcoICRI	GAGCTC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRII	CCWGG	1 cut(s)	822
EcoT14I	CCWWGG	1 cut(s)	909
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	909
FaeI	CATG	4 cut(s)	388, 782, 913, 1093
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	4 cut(s)	384, 778, 909, 1089
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	212, 753
FokI	GGATG	4 cut(s)	131, 313, 349, 717
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	212, 753
FspBI	CTAG	6 cut(s)	353, 440, 492, 501, 510, 980
GluI	GCNGC	2 cut(s)	212, 753
GsuI	CTGGAG	2 cut(s)	565, 1177
HaeIII	GGCC	2 cut(s)	349, 431
HapII	CCGG	6 cut(s)	115, 1023, 1129, 1156, 1176, 1183
HgaI	GACGC	1 cut(s)	931
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	4 cut(s)	388, 782, 913, 1093
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	2 cut(s)	284, 923
HpaII	CCGG	6 cut(s)	115, 1023, 1129, 1156, 1176, 1183
HphI	GGTGA	6 cut(s)	176, 191, 263, 536, 703, 858
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	463, 922
Hpy188III	TCNNGA	6 cut(s)	400, 492, 715, 779, 963, 1039
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	6 cut(s)	143, 154, 225, 290, 703, 742
HpyCH4III	ACNGT	2 cut(s)	487, 1069
HpyCH4IV	ACGT	2 cut(s)	49, 93
HpyCH4V	TGCA	3 cut(s)	574, 1001, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 355, 1130
HpyF3I	CTNAG	3 cut(s)	857, 897, 1096
HpySE526I	ACGT	2 cut(s)	49, 93
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	4 cut(s)	388, 782, 913, 1093
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	4 cut(s)	516, 802, 949, 1198
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	2 cut(s)	988, 994
MaeI	CTAG	6 cut(s)	353, 440, 492, 501, 510, 980
MaeII	ACGT	2 cut(s)	49, 93
MaeIII	GTNAC	3 cut(s)	924, 1085, 1178
MalI	GATC	4 cut(s)	518, 804, 951, 1200
MboI	GATC	4 cut(s)	516, 802, 949, 1198
MboII	GAAGA	7 cut(s)	270, 305, 787, 802, 811, 1066, 1151
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	3 cut(s)	29, 360, 1156
MlsI	TGGCCA	2 cut(s)	349, 431
MluCI	AATT	4 cut(s)	433, 480, 562, 815
MluNI	TGGCCA	2 cut(s)	349, 431
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	7 cut(s)	191, 498, 520, 619, 625, 733, 1044
Mox20I	TGGCCA	2 cut(s)	349, 431
MroXI	GAANNNNTTC	1 cut(s)	774
MscI	TGGCCA	2 cut(s)	349, 431
MseI	TTAA	5 cut(s)	156, 312, 479, 552, 1243
Msp20I	TGGCCA	2 cut(s)	349, 431
MspA1I	CMGCKG	1 cut(s)	1100
MspI	CCGG	6 cut(s)	115, 1023, 1129, 1156, 1176, 1183
MspR9I	CCNGG	6 cut(s)	116, 824, 1130, 1156, 1157, 1184
MvaI	CCWGG	1 cut(s)	824
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	217, 355, 1130
NciI	CCSGG	5 cut(s)	116, 1130, 1156, 1157, 1184
NcoI	CCATGG	1 cut(s)	909
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	516, 802, 949, 1198
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	388, 782, 913, 1093
NlaIV	GGNNCC	1 cut(s)	1153
NmuCI	GTSAC	2 cut(s)	924, 1085
NspI	RCATGY	2 cut(s)	388, 1093
PagI	TCATGA	1 cut(s)	778
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 942
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	213, 754
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
PscI	ACATGT	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	822
PspEI	GGTNACC	1 cut(s)	1178
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	1 cut(s)	1153
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	1 cut(s)	1100
RsaI	GTAC	4 cut(s)	99, 613, 686, 978
RsaNI	GTAC	4 cut(s)	98, 612, 685, 977
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	5 cut(s)	156, 312, 479, 552, 1243
SatI	GCNGC	2 cut(s)	212, 753
Sau3AI	GATC	4 cut(s)	516, 802, 949, 1198
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	6 cut(s)	116, 824, 1130, 1156, 1157, 1184
SduI	GDGCHC	3 cut(s)	29, 360, 1156
SfaNI	GCATC	2 cut(s)	988, 994
SmaI	CCCGGG	1 cut(s)	1157
SmlI	CTYRAG	5 cut(s)	28, 80, 601, 756, 1037
SmoI	CTYRAG	5 cut(s)	28, 80, 601, 756, 1037
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	4 cut(s)	433, 480, 562, 815
SsiI	CCGC	3 cut(s)	212, 233, 1202
SspMI	CTAG	6 cut(s)	353, 440, 492, 501, 510, 980
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	6 cut(s)	114, 822, 1128, 1154, 1155, 1182
StyI	CCWWGG	1 cut(s)	909
TaaI	ACNGT	2 cut(s)	487, 1069
TaiI	ACGT	2 cut(s)	52, 96
TaqI	TCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	433, 480, 562, 815
TatI	WGTACW	3 cut(s)	97, 684, 976
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	5 cut(s)	156, 312, 479, 552, 1243
Tru9I	TTAA	5 cut(s)	156, 312, 479, 552, 1243
TscAI	CASTG	2 cut(s)	1072, 1201
TseFI	GTSAC	2 cut(s)	924, 1085
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	2 cut(s)	924, 1085
TspDTI	ATGAA	4 cut(s)	72, 767, 795, 1152
TspGWI	ACGGA	1 cut(s)	638
TspMI	CCCGGG	1 cut(s)	1155
TspRI	CASTG	2 cut(s)	1072, 1201
VspI	ATTAAT	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	2 cut(s)	388, 1093
XmaI	CCCGGG	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	6 cut(s)	353, 440, 492, 501, 510, 980
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.