Rroxscaffold_4G00278970

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012375
Physical Location & Seq
Forward (+)
1894053 .. 1895406
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278970.1

Sequence Viewer

Length: 885 bp
ATGTTTCAGTCATTCAAGAAACAAAGAACACAAAATGTAAATATGGCCAATTTGCTAGCAAGCTATCCCAACATATCAGAACTCTCATATGGATTAATTACAGTTTCTAGACCAGCTAGGAGGACTAGATTGATCAATGGTGAGGGACATATTGGGTATGTAGAGATTAAGACCACAAATTGTGTAGTGCATTGCTCCAGTAGTAGTAGTGGTAGCTCAAGTAGTAGTACCTCATCAACGGAGGAAGTTGGTTTTGTAGGGAGTGGAAAGTTTGGTATTGATAGTAAGGGAGAGTTCAAGTACTTGGTGAGTGAGTATGGATGGAAGGTCAGGAGTTTGTTTAGAAATGGAGATGAGGTAAGGAAGGCAGCTCAAGTTCAAGCTGAAGCATTTCATGAACCTGTGTTTCTCTTCAATGATCTGTTCTTCCAATTCTTCCAGGCTGAAGTGTTATCTGGGCTTGTATATAAACTTAGGAACTCACCCCCAAACAGGTATGCTTGTTTGGTTGCTGAGCCTACTCCCATGGACACTTCCGAGTCACAAGAACTCGTGGGCGTCGTGGATCTCACGGCGTCAAGAGACCAGAATATACTAGAGCATCTCCCACCTGATGCAGATGAGTTTCTTTATGTGTCCGGCATAGCTGTTCTCAAGAGTTTTAGGAGGAAGAAAGTAGCCACTGTTTTACTAAAAGCTTGTGACATGCTCTCAGCTGAATGGGGATTTCAGTATCTTGCTCTCCGGGCTTATGAAGACGATTTTGGTGCCCGGGAGTTGTATGCAAATGCCGGTTACCGGGTTGTCTCCGGTGATCCGCCGTGGATGAGTACTTGGATTGGAAGAAAACGCCGTGTTGTTATGATCAAACATATTTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

8.57

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 178 - 266 2.5e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 767
AciI CCGC 1 cut(s) 818
AclWI GGATC 2 cut(s) 573, 809
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 405, 465
AcyI GRCGYC 2 cut(s) 558, 575
AfaI GTAC 3 cut(s) 229, 302, 832
AfiI CCNNNNNNNGG 2 cut(s) 492, 798
AgsI TTSAA 4 cut(s) 16, 298, 380, 415
AjnI CCWGG 1 cut(s) 438
AjuI GAANNNNNNNTTGG 2 cut(s) 747, 779
AluBI AGCT 8 cut(s) 63, 116, 216, 371, 383, 647, 698, 716
AluI AGCT 8 cut(s) 63, 116, 216, 371, 383, 647, 698, 716
Alw26I GTCTC 2 cut(s) 576, 811
AlwI GGATC 2 cut(s) 573, 809
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 368
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 390
AsuC2I CCSGG 4 cut(s) 746, 772, 773, 800
AsuHPI GGTGA 4 cut(s) 152, 319, 474, 824
AsuNHI GCTAGC 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 772
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 767
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 380
BccI CCATC 1 cut(s) 315
BceAI ACGGC 3 cut(s) 588, 805, 837
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 2 cut(s) 132, 864
BcnI CCSGG 4 cut(s) 746, 772, 773, 800
BcoDI GTCTC 2 cut(s) 576, 811
BfaI CTAG 5 cut(s) 56, 108, 117, 126, 596
BisI GCNGC 1 cut(s) 369
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 2 cut(s) 302, 832
Bme1390I CCNGG 5 cut(s) 440, 746, 772, 773, 800
BmeT110I CYCGRG 1 cut(s) 771
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 5 cut(s) 440, 746, 772, 773, 800
BmsI GCATC 2 cut(s) 604, 610
BmtI GCTAGC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 181
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 3 cut(s) 202, 357, 638
BpuMI CCSGG 4 cut(s) 746, 772, 773, 800
BsaHI GRCGYC 2 cut(s) 558, 575
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 525, 771, 821
BsaWI WCCGGW 1 cut(s) 809
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 492, 798
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 525, 771, 821
BseGI GGATG 2 cut(s) 326, 831
BseLI CCNNNNNNNGG 2 cut(s) 492, 798
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 504, 726
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 767
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 6 cut(s) 639, 745, 772, 792, 799, 810
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 492, 798
BsmAI GTCTC 2 cut(s) 576, 811
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 5 cut(s) 132, 418, 565, 814, 864
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 1 cut(s) 818
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 505, 725
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 769
BspOI GCTAGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 573, 809
BspT107I GGYRCC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 3 cut(s) 525, 771, 821
BssMI GATC 5 cut(s) 132, 418, 565, 814, 864
BssNI GRCGYC 2 cut(s) 558, 575
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 103, 685
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 2 cut(s) 558, 575
BstC8I GCNNGC 2 cut(s) 57, 61
BstDEI CTNAG 3 cut(s) 473, 513, 712
BstDSI CCRYGG 2 cut(s) 525, 821
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 2 cut(s) 326, 831
BstKTI GATC 5 cut(s) 135, 421, 568, 817, 867
BstMAI GTCTC 2 cut(s) 576, 811
BstMBI GATC 5 cut(s) 132, 418, 565, 814, 864
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 709
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 5 cut(s) 438, 744, 770, 771, 798
BstSLI GKGCMC 1 cut(s) 772
BstV1I GCAGC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 2 cut(s) 525, 821
BtsCI GGATG 2 cut(s) 326, 831
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 2 cut(s) 57, 61
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 791
Cfr9I CCCGGG 1 cut(s) 771
CseI GACGC 2 cut(s) 547, 564
Csp6I GTAC 3 cut(s) 228, 301, 831
CviAII CATG 3 cut(s) 395, 526, 706
CviQI GTAC 3 cut(s) 228, 301, 831
DdeI CTNAG 3 cut(s) 473, 513, 712
DpnI GATC 5 cut(s) 134, 420, 567, 816, 866
DpnII GATC 5 cut(s) 132, 418, 565, 814, 864
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 405, 465
Eco88I CYCGRG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 3 cut(s) 398, 529, 709
FaqI GGGAC 1 cut(s) 159
FatI CATG 3 cut(s) 394, 525, 705
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 2 cut(s) 132, 864
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 333, 838
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 5 cut(s) 56, 108, 117, 126, 596
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 47
HapII CCGG 6 cut(s) 639, 745, 772, 792, 799, 810
HgaI GACGC 2 cut(s) 547, 564
Hin1I GRCGYC 2 cut(s) 558, 575
Hin1II CATG 3 cut(s) 398, 529, 709
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 1 cut(s) 539
HpaII CCGG 6 cut(s) 639, 745, 772, 792, 799, 810
HphI GGTGA 4 cut(s) 152, 319, 474, 824
Hpy188I TCNGA 2 cut(s) 79, 538
Hpy188III TCNNGA 6 cut(s) 16, 108, 331, 395, 579, 655
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 319, 358
HpyCH4III ACNGT 2 cut(s) 103, 685
HpyCH4V TGCA 3 cut(s) 190, 617, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 3 cut(s) 473, 513, 712
Hsp92I GRCGYC 2 cut(s) 558, 575
Hsp92II CATG 3 cut(s) 398, 529, 709
Ksp22I TGATCA 2 cut(s) 132, 864
Kzo9I GATC 5 cut(s) 132, 418, 565, 814, 864
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 2 cut(s) 604, 610
MaeI CTAG 5 cut(s) 56, 108, 117, 126, 596
MaeIII GTNAC 3 cut(s) 540, 701, 794
MalI GATC 5 cut(s) 134, 420, 567, 816, 866
MboI GATC 5 cut(s) 132, 418, 565, 814, 864
MboII GAAGA 6 cut(s) 403, 418, 427, 682, 767, 855
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 772
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 4 cut(s) 49, 96, 178, 431
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 6 cut(s) 114, 136, 235, 241, 349, 660
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 390
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 95, 168
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 6 cut(s) 639, 745, 772, 792, 799, 810
MspR9I CCNGG 5 cut(s) 440, 746, 772, 773, 800
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 746
NciI CCSGG 4 cut(s) 746, 772, 773, 800
NcoI CCATGG 1 cut(s) 525
NdeI CATATG 1 cut(s) 88
NdeII GATC 5 cut(s) 132, 418, 565, 814, 864
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 3 cut(s) 398, 529, 709
NlaIV GGNNCC 1 cut(s) 769
NmuCI GTSAC 2 cut(s) 540, 701
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 390
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 438
PspEI GGTNACC 1 cut(s) 794
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 769
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 3 cut(s) 229, 302, 832
RsaNI GTAC 3 cut(s) 228, 301, 831
SaqAI TTAA 2 cut(s) 95, 168
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 5 cut(s) 132, 418, 565, 814, 864
ScaI AGTACT 2 cut(s) 302, 832
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 5 cut(s) 440, 746, 772, 773, 800
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 2 cut(s) 604, 610
SmaI CCCGGG 1 cut(s) 773
SmlI CTYRAG 3 cut(s) 217, 372, 653
SmoI CTYRAG 3 cut(s) 217, 372, 653
Sse9I AATT 4 cut(s) 49, 96, 178, 431
SsiI CCGC 1 cut(s) 818
SspMI CTAG 5 cut(s) 56, 108, 117, 126, 596
StyD4I CCNGG 5 cut(s) 438, 744, 770, 771, 798
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 103, 685
TaqI TCGA 1 cut(s) 878
TasI AATT 4 cut(s) 49, 96, 178, 431
TatI WGTACW 2 cut(s) 300, 830
Tru1I TTAA 2 cut(s) 95, 168
Tru9I TTAA 2 cut(s) 95, 168
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 540, 701
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 2 cut(s) 540, 701
TspDTI ATGAA 3 cut(s) 383, 411, 768
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 771
TspRI CASTG 1 cut(s) 688
VspI ATTAAT 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 709
XmaI CCCGGG 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 5 cut(s) 56, 108, 117, 126, 596
ZrmI AGTACT 2 cut(s) 302, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.