Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437397.1

Orthogroup ID

OG0012375

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 805

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 532 bp

atggccaatttgctagcaagctatcccaacatatcagaactctcatatggattaattacagtttctagaccagctaggaggactagattgatcaatggtgagggacatattgggtatgtagagattaagaccacaaattgtgtagtgcattgctccagtagtagtagtggtagctcaagtagtagtacctcatcaacggaggaagtgggttttgtagggagtggaaagtttggtattgatagtaagggagagttcaagtacttggtgagtgagtatggatggaaggtcaggagtttgtttagaaatggagatgaggtaaggaaggcagctcaagttcaagctgaagcatttcatgaacctgtgtttctcttcaatgatctgttcttccaattcttccaggctgaagtgttatctgggcttgtatataaacttaggaactcacccccaaacaggtatgcttgtttagttgctgagcctacgcccatggacacttccgagtcacaagaactcgtgggcgtcgtggatctcacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

5.64

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72030
fragaria_vesca	FvH4_7g31720 FvH4_7g31720
malus_domestica	MD01G1220200.v1.1
prunus_persica	Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380911
rosa_laevigata	RLG00000026263
rosa_multiflora	Rmu_co8437397.1_g000001 Rmu_sc0002962.1_g000021 Rmu_sc0004623.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278970
rosa_rugosa	Rorug01G0425400 Rorug01G0425500
rosa_samantha	Rh1AG449200 Rh1BG404900 Rh1CG418900 Rh1DG435300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	363, 423
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	2 cut(s)	187, 260
AfiI	CCNNNNNNNGG	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	256, 338, 373
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	5 cut(s)	21, 74, 174, 329, 341
AluI	AGCT	5 cut(s)	21, 74, 174, 329, 341
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	110, 277, 432
AsuNHI	GCTAGC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	398
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	4 cut(s)	14, 66, 75, 84
BisI	GCNGC	1 cut(s)	327
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	328
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	398
BmtI	GCTAGC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	139
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	160, 315
BsaHI	GRCGYC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	90, 376, 523
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	531
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	3 cut(s)	90, 376, 523
BssNI	GRCGYC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	15, 19
BstDEI	CTNAG	2 cut(s)	431, 471
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	93, 379, 526
BstMBI	GATC	3 cut(s)	90, 376, 523
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	15, 19
CciI	TCATGA	1 cut(s)	352
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	186, 259
CviAII	CATG	2 cut(s)	353, 484
CviJI	RGCY	9 cut(s)	5, 21, 74, 174, 329, 341, 401, 418, 475
CviKI_1	RGCY	9 cut(s)	5, 21, 74, 174, 329, 341, 401, 418, 475
CviQI	GTAC	2 cut(s)	186, 259
DdeI	CTNAG	2 cut(s)	431, 471
DpnI	GATC	3 cut(s)	92, 378, 525
DpnII	GATC	3 cut(s)	90, 376, 523
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	363, 423
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	356, 487
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	352, 483
FauNDI	CATATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	4 cut(s)	14, 66, 75, 84
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	356, 487
HinfI	GANTC	1 cut(s)	497
HphI	GGTGA	3 cut(s)	110, 277, 432
Hpy188I	TCNGA	2 cut(s)	37, 496
Hpy188III	TCNNGA	3 cut(s)	66, 289, 353
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	2 cut(s)	277, 316
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	148
HpyF3I	CTNAG	2 cut(s)	431, 471
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	356, 487
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 376, 523
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	84, 169, 274, 372, 383, 399, 410, 436
Lsp1109I	GCAGC	1 cut(s)	338
MaeI	CTAG	4 cut(s)	14, 66, 75, 84
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	3 cut(s)	92, 378, 525
MboI	GATC	3 cut(s)	90, 376, 523
MboII	GAAGA	3 cut(s)	361, 376, 385
MflI	RGATCY	1 cut(s)	523
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	7, 54, 136, 389
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	5 cut(s)	72, 94, 193, 199, 307
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	53, 126
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	3 cut(s)	90, 376, 523
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	356, 487
NmuCI	GTSAC	1 cut(s)	498
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	2 cut(s)	187, 260
RsaNI	GTAC	2 cut(s)	186, 259
SaqAI	TTAA	2 cut(s)	53, 126
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	90, 376, 523
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	175, 330
SmoI	CTYRAG	2 cut(s)	175, 330
Sse9I	AATT	4 cut(s)	7, 54, 136, 389
SspMI	CTAG	4 cut(s)	14, 66, 75, 84
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	4 cut(s)	7, 54, 136, 389
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	53, 126
Tru9I	TTAA	2 cut(s)	53, 126
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	2 cut(s)	341, 369
TspGWI	ACGGA	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	53
XbaI	TCTAGA	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	4 cut(s)	14, 66, 75, 84
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.