Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012375

Physical Location & Seq

Genomic Coordinates Reverse (-)

52768443 .. 52769550

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG404900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGAGGGACATATTGGGGAGTGGAAAGTTTGGTATTGATAGTACGGGAGAGTTCGAGTACTTGGTGAGTGAGTATGGATGGAAGGTCAGGAGTTTGTTTAGAAATGGAGATGAGGTAAGGAAGGCAGCTCAAGTTCAAGCTGAAGCATTTCATGAACCTGTGTTTCTCTTCAATGATCTGTTCTTCCAATTCTTCCAGGCTGAAGTGTTATCTGGGCTTGTATATAAACTTAGGAACTCACCCCCAAACAGGTATGCTTGTTTAGTTGCTGAGCCTACGCCCATGGACACTTCCGAGTCAAAAGAACTCGTGGGCGTCGTGGATCTCACGGCGTCAAGAGACCAGAATGTACTAGAGCATCTCCCACCTGATGCAGATGAGTTTCTTTATGTGTCCGGCATAGCTGTTCTCAAGAGTTTTAGGAGGAAGAAAGTAGCCACTGTTTTACTAAAAGCTTGTGACATGCTCTCAGCTGAATGGGGATTTCAGTATCTTGCTCTCCGGGCTTATGAAGACGATTTTGGTGCCCGGGAGTTGTATGCAAATGCCGGTTACCGGGTTGTCTCCAGTGATCCGCCGTGGATGAGTACTTGGATTGGAAGAAAACGCCGTGTTGTTATGATCAAACAGATTCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

214

Amino Acids

24.35

Weight (kDa)

5.81

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	98 - 186	1.5e-08	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	102 - 187	4.6e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72030
fragaria_vesca	FvH4_7g31720 FvH4_7g31720
malus_domestica	MD01G1220200.v1.1
prunus_persica	Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380911
rosa_laevigata	RLG00000026263
rosa_multiflora	Rmu_co8437397.1_g000001 Rmu_sc0002962.1_g000021 Rmu_sc0004623.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278970
rosa_rugosa	Rorug01G0425400 Rorug01G0425500
rosa_samantha	Rh1AG449200 Rh1BG404900 Rh1CG418900 Rh1DG435300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	527
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	2 cut(s)	333, 569
AcuI	CTGAAG	2 cut(s)	165, 225
AcyI	GRCGYC	2 cut(s)	318, 335
AfaI	GTAC	4 cut(s)	46, 62, 354, 592
AfiI	CCNNNNNNNGG	2 cut(s)	252, 558
AgsI	TTSAA	2 cut(s)	140, 175
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	131, 143, 407, 458, 476
AluI	AGCT	5 cut(s)	131, 143, 407, 458, 476
Alw26I	GTCTC	2 cut(s)	336, 571
AlwI	GGATC	2 cut(s)	333, 569
AlwNI	CAGNNNCTG	1 cut(s)	637
Ama87I	CYCGRG	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuC2I	CCSGG	4 cut(s)	506, 532, 533, 560
AsuHPI	GGTGA	3 cut(s)	16, 79, 234
AvaI	CYCGRG	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	527
BauI	CACGAG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	3 cut(s)	348, 565, 597
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	624
BcnI	CCSGG	4 cut(s)	506, 532, 533, 560
BcoDI	GTCTC	2 cut(s)	336, 571
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	2 cut(s)	62, 592
Bme1390I	CCNGG	5 cut(s)	200, 506, 532, 533, 560
BmeT110I	CYCGRG	1 cut(s)	531
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	5 cut(s)	200, 506, 532, 533, 560
BmsI	GCATC	2 cut(s)	364, 370
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	553
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	117, 398
BpuMI	CCSGG	4 cut(s)	506, 532, 533, 560
BsaHI	GRCGYC	2 cut(s)	318, 335
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	285, 531, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 558
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	285, 531, 581
BseGI	GGATG	2 cut(s)	86, 591
BseLI	CCNNNNNNNGG	2 cut(s)	252, 558
BseMII	CTCAG	2 cut(s)	264, 486
BseNI	ACTGG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	5 cut(s)	399, 505, 532, 552, 559
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	252, 558
BsmAI	GTCTC	2 cut(s)	336, 571
BsmFI	GGGAC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	178, 325, 574, 624
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	265, 485
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	333, 569
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	570
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	285, 531, 581
BssMI	GATC	4 cut(s)	178, 325, 574, 624
BssNI	GRCGYC	2 cut(s)	318, 335
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	2 cut(s)	318, 335
BstDEI	CTNAG	3 cut(s)	233, 273, 472
BstDSI	CCRYGG	2 cut(s)	285, 581
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	86, 591
BstKTI	GATC	4 cut(s)	181, 328, 577, 627
BstMAI	GTCTC	2 cut(s)	336, 571
BstMBI	GATC	4 cut(s)	178, 325, 574, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	469
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	5 cut(s)	198, 504, 530, 531, 558
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	285, 581
BtsCI	GGATG	2 cut(s)	86, 591
BtsIMutI	CAGTG	2 cut(s)	441, 577
CaiI	CAGNNNCTG	1 cut(s)	637
CciI	TCATGA	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	551
Cfr9I	CCCGGG	1 cut(s)	531
CseI	GACGC	2 cut(s)	307, 324
Csp6I	GTAC	4 cut(s)	45, 61, 353, 591
CviAII	CATG	3 cut(s)	155, 286, 466
CviQI	GTAC	4 cut(s)	45, 61, 353, 591
DdeI	CTNAG	3 cut(s)	233, 273, 472
DpnI	GATC	4 cut(s)	180, 327, 576, 626
DpnII	GATC	4 cut(s)	178, 325, 574, 624
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	165, 225
Eco88I	CYCGRG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	158, 289, 469
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	154, 285, 465
FbaI	TGATCA	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	93, 598
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	553
HapII	CCGG	5 cut(s)	399, 505, 532, 552, 559
HgaI	GACGC	2 cut(s)	307, 324
Hin1I	GRCGYC	2 cut(s)	318, 335
Hin1II	CATG	3 cut(s)	158, 289, 469
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	2 cut(s)	299, 634
HpaII	CCGG	5 cut(s)	399, 505, 532, 552, 559
HphI	GGTGA	3 cut(s)	16, 79, 234
Hpy188I	TCNGA	2 cut(s)	298, 639
Hpy188III	TCNNGA	4 cut(s)	91, 155, 339, 415
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	79, 118
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	377, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	3 cut(s)	233, 273, 472
Hsp92I	GRCGYC	2 cut(s)	318, 335
Hsp92II	CATG	3 cut(s)	158, 289, 469
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	178, 325, 574, 624
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	364, 370
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	461, 554
MalI	GATC	4 cut(s)	180, 327, 576, 626
MboI	GATC	4 cut(s)	178, 325, 574, 624
MboII	GAAGA	6 cut(s)	163, 178, 187, 442, 527, 615
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	109, 420
MroXI	GAANNNNTTC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	5 cut(s)	399, 505, 532, 552, 559
MspR9I	CCNGG	5 cut(s)	200, 506, 532, 533, 560
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	506
NciI	CCSGG	4 cut(s)	506, 532, 533, 560
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	178, 325, 574, 624
NlaIII	CATG	3 cut(s)	158, 289, 469
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	469
PagI	TCATGA	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	46, 62, 354, 592
RsaNI	GTAC	4 cut(s)	45, 61, 353, 591
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	4 cut(s)	178, 325, 574, 624
ScaI	AGTACT	2 cut(s)	62, 592
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	5 cut(s)	200, 506, 532, 533, 560
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	364, 370
SmaI	CCCGGG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	132, 413
SmoI	CTYRAG	2 cut(s)	132, 413
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	5 cut(s)	198, 504, 530, 531, 558
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	191
TatI	WGTACW	3 cut(s)	60, 352, 590
TfiI	GAWTC	1 cut(s)	634
TscAI	CASTG	2 cut(s)	448, 577
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	143, 171, 528
TspMI	CCCGGG	1 cut(s)	531
TspRI	CASTG	2 cut(s)	448, 577
XceI	RCATGY	1 cut(s)	469
XmaI	CCCGGG	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	2 cut(s)	62, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.