Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0012375

Physical Location & Seq

Genomic Coordinates Forward (+)

31234661 .. 31235380

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1220200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGCATCATTTGCTAGCGAGCTACCATATATCAGGAAAACTCAGCAAAGAAATTTCATCATATGGATTTACTCCTTCTAGACCAGCTAATATTTTTAGGACAAGTAATTCATCTTCTTCTTCAGTGCAATACAGCAGCAGCAGCAGCAACAGTTTGACGTCGTCGACCGATCGGGAAGAAGTAGGGTTTGTGGGGAGTGGGAAGTTTGGTATTGACAGAAAGGGAGAGTTCAAGTATTTGGTGAGTGAGTTTGGTTGGAAGGTCAGGAGTTTGTTCAGAAATGGGGATGAGGTGAGGAAGGCAGCTTATGTTCAAGCTGAAGCATTTCATGAACCTGTATCTCTCTTCGATGATTTCTTCTTCACCTTCTTCCAGGCTGAAGTGCTTTCTGGGCTTGTATATAAACTTAGGAATTCACCCCCAGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

8.89

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72030
fragaria_vesca	FvH4_7g31720 FvH4_7g31720
malus_domestica	MD01G1220200.v1.1
prunus_persica	Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1 Prupe.2G311100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380911
rosa_laevigata	RLG00000026263
rosa_multiflora	Rmu_co8437397.1_g000001 Rmu_sc0002962.1_g000021 Rmu_sc0004623.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278970
rosa_rugosa	Rorug01G0425400 Rorug01G0425500
rosa_samantha	Rh1AG449200 Rh1BG404900 Rh1CG418900 Rh1DG435300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	167
AcsI	RAATTY	2 cut(s)	54, 415
AcuI	CTGAAG	3 cut(s)	108, 342, 402
AcyI	GRCGYC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	429
AgsI	TTSAA	2 cut(s)	235, 317
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	4 cut(s)	24, 89, 308, 320
AluI	AGCT	4 cut(s)	24, 89, 308, 320
ApeKI	GCWGC	5 cut(s)	138, 141, 144, 147, 305
ApoI	RAATTY	2 cut(s)	54, 415
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	4 cut(s)	256, 307, 358, 411
AsuNHI	GCTAGC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbvI	GCAGC	5 cut(s)	150, 153, 156, 159, 317
BciT130I	CCWGG	1 cut(s)	377
BfaI	CTAG	2 cut(s)	17, 81
BisI	GCNGC	5 cut(s)	139, 142, 145, 148, 306
BlsI	GCNGC	5 cut(s)	140, 143, 146, 149, 307
Bme1390I	CCNGG	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	16
BmtI	GCTAGC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	58
BseXI	GCAGC	5 cut(s)	150, 153, 156, 159, 317
Bsh1285I	CGRYCG	2 cut(s)	171, 175
BsiEI	CGRYCG	2 cut(s)	171, 175
BslI	CCNNNNNNNGG	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	20
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	2 cut(s)	44, 410
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	2 cut(s)	171, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 144, 147, 394
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	5 cut(s)	150, 153, 156, 159, 317
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	18, 22
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	7
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	6 cut(s)	24, 89, 308, 320, 380, 397
CviKI_1	RGCY	6 cut(s)	24, 89, 308, 320, 380, 397
DdeI	CTNAG	2 cut(s)	44, 410
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco57I	CTGAAG	3 cut(s)	108, 342, 402
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	335
FaiI	YATR	8 cut(s)	30, 32, 64, 66, 312, 333, 403, 405
FatI	CATG	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	5 cut(s)	139, 142, 145, 148, 306
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	5 cut(s)	139, 142, 145, 148, 306
FspBI	CTAG	2 cut(s)	17, 81
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	139, 142, 145, 148, 306
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HphI	GGTGA	4 cut(s)	256, 307, 358, 411
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	5 cut(s)	36, 81, 176, 268, 332
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	166, 169
HpyAV	CCTTC	4 cut(s)	87, 256, 295, 379
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 144, 147, 394
HpyF3I	CTNAG	2 cut(s)	44, 410
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	21, 99, 253, 351, 362, 378, 389
Lsp1109I	GCAGC	5 cut(s)	150, 153, 156, 159, 317
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	17, 81
MaeII	ACGT	1 cut(s)	161
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	8 cut(s)	108, 111, 114, 191, 340, 352, 355, 364
MluCI	AATT	3 cut(s)	54, 109, 415
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	286, 291
MroXI	GAANNNNTTC	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	13, 144, 147, 394
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	1 cut(s)	172
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	140, 143, 146, 149, 307
Ple19I	CGATCG	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	166
SatI	GCNGC	5 cut(s)	139, 142, 145, 148, 306
Sau3AI	GATC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	16
Sse9I	AATT	3 cut(s)	54, 109, 415
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	2 cut(s)	17, 81
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	167, 351
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	54, 109, 415
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	5 cut(s)	138, 141, 144, 147, 305
TspDTI	ATGAA	4 cut(s)	48, 102, 320, 348
TspRI	CASTG	1 cut(s)	132
Tth111I	GACNNNGTC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	54, 415
XbaI	TCTAGA	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	2 cut(s)	17, 81
ZraI	GACGTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.