FvH4_7g31810

phosphatase 2c

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22953022 .. 22955015
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31810.t1

Sequence Viewer

Length: 1170 bp
ATGACGTTAGATTCCGGCGATTTGAGGCGGAGCCTCGTTTTCGAGACGAAGAGTGATCGCACCAGAAGAAGACTGAGAGTCCGGCGACTCAAGTACACGTGTCGGACGAAGATTCAGCTGGACGTCACCGGCGGCGAAGAGGAACACTGCTCCGGAGATCGTCAAACTTGTGAGAAGGAAGGTGGCAACTCCATGAAGATATTATCGGTGTCGTTCTCGGAAAACGACCGCGTTTTGTCGAGCTACGGAGGCGAGGTGAGCGAAGGGAGGACTGGGAGGAGTAGCTACGGCGTAGTTTCGGTGGTGGGGAGGAGGAGGGAGATGGAAGATGCGGTGAGAGCGGAGGTAGGGTTTGCGGTGAAAGGAAAGTACGACTTTTACGGGGTGTACGACGGGCATGGTGGGTCCGAGGTGGCGAGTGTTTGCCGGGAGAGGTTACACGAGGTGGTGGCGGAGGCGGTGGAGATGGAGGTGGTGAAGGGAGTGAAGGAGGTGGTTATTGATTGGGAGAGGGTGATGGAGGGGTGTTTTGGGAAAATGGATGAGGAGGTGAGTGGGATCTCTGTAGCCAAGACGGTTGGATCCACGGCGGTGGCTGCGGTGGTGACGGAGGAGCTGGTTGTGGTGGCCAACTGTGGTGATTCTAGGGCAGTGTTGTCAAGGCTAGGTGGTACTATTGCCTTGCCCTTGTCTACTGATCACAAGCCTGATAGAGCAGATGAGTTGGAGAGAATTGAAGCTGCCGGAGGGAGGGTGATCAATTGGAACGGAAGCCGTGTTCTAGGGGTGCTTGCTACTTCCAGATCCATAGGTGACCAGTACCTGAGACCATATGTGATATCGAAACCGGAGGTAACAGTGACGAACCGAACAGACAAGGATGAATTCCTCATCCTAGCTAGTGATGGCTTATGGGATGTCATATCCAATGAGCTTGCATGTCAAGTTGTGAACAAGGTCGTACGGGGAAGAATGATGACGAGGATGATTAATGATCATGATCGTGATCGTGATCGTGTACTCCTGGATTATGAAGGGTCGCCGGCGGACAATGGTGCCTGTAGCAAAACATCAGAGGCGGGAACAGTGCTGGCTGAGCTAGCTATGGCTCGGGGAAGCAAAGATAACATAAGTGTCATAGTAGTCGACCTCAGAAAATTGTCTACCTAG

Protein Analysis

390

Amino Acids

42.64

Weight (kDa)

5.66

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 96 - 377 7.4e-59 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013722)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 1055
AccBSI CCGCTC 1 cut(s) 341
AccI GTMKAC 3 cut(s) 692, 1146, 1163
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 152
AclWI GGATC 4 cut(s) 566, 576, 589, 798
AcoI YGGCCR 1 cut(s) 627
AcsI RAATTY 1 cut(s) 884
AcvI CACGTG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 7 cut(s) 95, 371, 389, 673, 821, 963, 1020
AfiI CCNNNNNNNGG 1 cut(s) 750
AflIII ACRYGT 2 cut(s) 96, 98
AgsI TTSAA 1 cut(s) 737
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 1 cut(s) 1023
AleI CACNNNNGTG 1 cut(s) 590
AloI GAACNNNNNNTCC 2 cut(s) 762, 794
AluBI AGCT 9 cut(s) 118, 243, 285, 616, 740, 899, 934, 1099, 1103
AluI AGCT 9 cut(s) 118, 243, 285, 616, 740, 899, 934, 1099, 1103
Alw26I GTCTC 2 cut(s) 38, 820
AlwI GGATC 4 cut(s) 566, 576, 589, 798
AlwNI CAGNNNCTG 1 cut(s) 823
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 2 cut(s) 596, 740
ApoI RAATTY 1 cut(s) 884
AseI ATTAAT 1 cut(s) 990
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 428
AsuNHI GCTAGC 1 cut(s) 1099
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 1 cut(s) 405
BalI TGGCCA 1 cut(s) 629
BamHI GGATCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 1055
BauI CACGAG 1 cut(s) 440
BbrPI CACGTG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 583, 727
BccI CCATC 4 cut(s) 316, 460, 511, 899
BceAI ACGGC 3 cut(s) 304, 603, 759
BciT130I CCWGG 1 cut(s) 1025
BclI TGATCA 3 cut(s) 697, 756, 994
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 2 cut(s) 38, 820
BfaI CTAG 7 cut(s) 645, 665, 782, 896, 900, 1100, 1168
BfmI CTRYAG 2 cut(s) 564, 1060
BisI GCNGC 3 cut(s) 133, 597, 741
BlpI GCTNAGC 1 cut(s) 1095
BlsI GCNGC 3 cut(s) 134, 598, 742
Bme1390I CCNGG 2 cut(s) 428, 1025
Bme18I GGWCC 1 cut(s) 405
BmeRI GACNNNNNGTC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 4 cut(s) 32, 406, 583, 1057
BmrFI CCNGG 2 cut(s) 428, 1025
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 319
BmtI GCTAGC 1 cut(s) 1103
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 76
Bpu1102I GCTNAGC 1 cut(s) 1095
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 99
BsaBI GATNNNNATC 3 cut(s) 999, 1005, 1011
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 2 cut(s) 408, 585
BsaWI WCCGGW 2 cut(s) 152, 847
BsaXI ACNNNNNCTCC 6 cut(s) 240, 270, 335, 365, 738, 768
Bsc4I CCNNNNNNNGG 1 cut(s) 750
Bse118I RCCGGY 2 cut(s) 128, 1042
Bse1I ACTGG 2 cut(s) 277, 817
Bse8I GATNNNNATC 3 cut(s) 999, 1005, 1011
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 1025
BseDI CCNNGG 2 cut(s) 408, 585
BseGI GGATG 5 cut(s) 547, 886, 891, 922, 990
BseJI GATNNNNATC 3 cut(s) 999, 1005, 1011
BseLI CCNNNNNNNGG 1 cut(s) 750
BseMII CTCAG 4 cut(s) 65, 815, 1086, 1165
BseNI ACTGG 2 cut(s) 277, 817
BseRI GAGGAG 5 cut(s) 292, 325, 328, 560, 626
BseXI GCAGC 2 cut(s) 583, 727
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 629
BshNI GGYRCC 1 cut(s) 1055
BsiEI CGRYCG 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 8 cut(s) 15, 82, 129, 153, 427, 744, 848, 1043
BsiWI CGTACG 1 cut(s) 961
BslI CCNNNNNNNGG 1 cut(s) 750
BsmAI GTCTC 2 cut(s) 38, 820
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 1 cut(s) 820
BsoBI CYCGRG 1 cut(s) 1110
Bsp13I TCCGGA 1 cut(s) 152
Bsp1720I GCTNAGC 1 cut(s) 1095
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 4 cut(s) 66, 816, 1087, 1164
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 32, 406, 583, 1057
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 566, 576, 589, 798
BspT107I GGYRCC 1 cut(s) 1055
BspTNI GGTCTC 1 cut(s) 820
BsrBI CCGCTC 1 cut(s) 341
BsrFI RCCGGY 2 cut(s) 128, 1042
BsrI ACTGG 2 cut(s) 277, 817
BssAI RCCGGY 2 cut(s) 128, 1042
BssECI CCNNGG 2 cut(s) 408, 585
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 1025
Bst4CI ACNGT 4 cut(s) 577, 635, 859, 1087
Bst6I CTCTTC 2 cut(s) 44, 132
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 99
BstC8I GCNNGC 5 cut(s) 792, 936, 1044, 1092, 1101
BstDEI CTNAG 4 cut(s) 74, 824, 1095, 1151
BstDSI CCRYGG 1 cut(s) 585
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 5 cut(s) 547, 886, 891, 922, 990
BstFNI CGCG 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 38, 820
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 6 cut(s) 249, 258, 338, 596, 1096, 1100
BstNI CCWGG 1 cut(s) 1025
BstNSI RCATGY 1 cut(s) 942
BstPI GGTNACC 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 426, 1023
BstSFI CTRYAG 2 cut(s) 564, 1060
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 583, 727
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 3 cut(s) 558, 581, 803
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 3 cut(s) 558, 581, 803
BsuRI GGCC 1 cut(s) 629
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 5 cut(s) 547, 886, 891, 922, 990
BtsI GCAGTG 2 cut(s) 145, 657
BtsIMutI CAGTG 4 cut(s) 145, 657, 864, 1092
Cac8I GCNNGC 5 cut(s) 792, 936, 1044, 1092, 1101
CaiI CAGNNNCTG 1 cut(s) 823
CciI TCATGA 1 cut(s) 997
Cfr10I RCCGGY 2 cut(s) 128, 1042
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 7 cut(s) 94, 370, 388, 672, 820, 962, 1019
CviAII CATG 4 cut(s) 193, 398, 939, 998
CviQI GTAC 7 cut(s) 94, 370, 388, 672, 820, 962, 1019
DdeI CTNAG 4 cut(s) 74, 824, 1095, 1151
DraIII CACNNNGTG 1 cut(s) 445
DriI GACNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 627
Eam1104I CTCTTC 2 cut(s) 44, 132
Eam1105I GACNNNNNGTC 1 cut(s) 77
EarI CTCTTC 2 cut(s) 44, 132
EciI GGCGGA 3 cut(s) 43, 467, 1061
Eco31I GGTCTC 1 cut(s) 820
Eco32I GATATC 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 1110
Eco91I GGTNACC 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 884
EcoRII CCWGG 1 cut(s) 1023
EcoRV GATATC 1 cut(s) 840
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 4 cut(s) 196, 401, 942, 1001
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 4 cut(s) 192, 397, 938, 997
FauI CCCGC 1 cut(s) 1072
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 3 cut(s) 697, 756, 994
FblI GTMKAC 3 cut(s) 692, 1146, 1163
Fnu4HI GCNGC 3 cut(s) 133, 597, 741
FokI GGATG 5 cut(s) 554, 878, 893, 929, 997
Fsp4HI GCNGC 3 cut(s) 133, 597, 741
FspBI CTAG 7 cut(s) 645, 665, 782, 896, 900, 1100, 1168
GluI GCNGC 3 cut(s) 133, 597, 741
HaeIII GGCC 1 cut(s) 629
HapII CCGG 8 cut(s) 15, 82, 129, 153, 427, 744, 848, 1043
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 196, 401, 942, 1001
HincII GTYRAC 1 cut(s) 1147
HindII GTYRAC 1 cut(s) 1147
HinfI GANTC 5 cut(s) 11, 78, 87, 112, 641
HpaII CCGG 8 cut(s) 15, 82, 129, 153, 427, 744, 848, 1043
Hpy166II GTNNAC 7 cut(s) 96, 388, 693, 952, 1019, 1147, 1164
Hpy188I TCNGA 5 cut(s) 105, 220, 409, 1075, 1154
Hpy188III TCNNGA 6 cut(s) 43, 153, 801, 998, 1004, 1010
Hpy8I GTNNAC 7 cut(s) 96, 388, 693, 952, 1019, 1147, 1164
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 6 cut(s) 169, 173, 257, 472, 481, 1028
HpyCH4III ACNGT 4 cut(s) 577, 635, 859, 1087
HpyCH4IV ACGT 3 cut(s) 5, 98, 123
HpyCH4V TGCA 1 cut(s) 938
HpyF10VI GCNNNNNNNGC 6 cut(s) 249, 258, 338, 596, 1096, 1100
HpyF3I CTNAG 4 cut(s) 74, 824, 1095, 1151
HpySE526I ACGT 3 cut(s) 5, 98, 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 196, 401, 942, 1001
Kpn2I TCCGGA 1 cut(s) 152
KroI GCCGGC 1 cut(s) 1042
KroNI GCCGGC 1 cut(s) 1044
Ksp22I TGATCA 3 cut(s) 697, 756, 994
LmnI GCTCC 3 cut(s) 30, 155, 613
Lsp1109I GCAGC 2 cut(s) 583, 727
LweI GCATC 1 cut(s) 319
MaeI CTAG 7 cut(s) 645, 665, 782, 896, 900, 1100, 1168
MaeII ACGT 3 cut(s) 5, 98, 123
MaeIII GTNAC 6 cut(s) 124, 435, 604, 812, 853, 859
MbiI CCGCTC 1 cut(s) 341
MboII GAAGA 8 cut(s) 61, 78, 81, 121, 149, 208, 338, 981
MfeI CAATTG 1 cut(s) 760
MflI RGATCY 3 cut(s) 558, 581, 803
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 4 cut(s) 732, 760, 884, 1157
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 2 cut(s) 81, 87
MmeI TCCRAC 3 cut(s) 83, 559, 705
Mox20I TGGCCA 1 cut(s) 629
MreI CGCCGGCG 1 cut(s) 1042
MroI TCCGGA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 629
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 2 cut(s) 590, 1002
Msp20I TGGCCA 1 cut(s) 629
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 8 cut(s) 15, 82, 129, 153, 427, 744, 848, 1043
MspR9I CCNGG 2 cut(s) 428, 1025
MunI CAATTG 1 cut(s) 760
MvaI CCWGG 1 cut(s) 1025
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 6 cut(s) 249, 258, 338, 596, 1096, 1100
NaeI GCCGGC 1 cut(s) 1044
NciI CCSGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 832
NgoMIV GCCGGC 1 cut(s) 1042
NheI GCTAGC 1 cut(s) 1099
NlaIII CATG 4 cut(s) 196, 401, 942, 1001
NlaIV GGNNCC 4 cut(s) 32, 406, 583, 1057
NmuCI GTSAC 4 cut(s) 124, 604, 812, 859
NspI RCATGY 1 cut(s) 942
OliI CACNNNNGTG 1 cut(s) 590
PagI TCATGA 1 cut(s) 997
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 387
PdiI GCCGGC 1 cut(s) 1044
PfeI GAWTC 3 cut(s) 11, 112, 641
Pfl23II CGTACG 1 cut(s) 961
PfoI TCCNGGA 1 cut(s) 1023
PkrI GCNGC 3 cut(s) 134, 598, 742
PleI GAGTC 2 cut(s) 81, 86
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
PpsI GAGTC 2 cut(s) 81, 86
Ppu21I YACGTR 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 990
Psp6I CCWGG 1 cut(s) 1023
PspCI CACGTG 1 cut(s) 99
PspEI GGTNACC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 1023
PspLI CGTACG 1 cut(s) 961
PspN4I GGNNCC 4 cut(s) 32, 406, 583, 1057
PspPI GGNCC 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 3 cut(s) 558, 581, 803
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 7 cut(s) 95, 371, 389, 673, 821, 963, 1020
RsaNI GTAC 7 cut(s) 94, 370, 388, 672, 820, 962, 1019
RseI CAYNNNNRTG 2 cut(s) 590, 1002
SalI GTCGAC 1 cut(s) 1145
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 3 cut(s) 133, 597, 741
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 2 cut(s) 81, 87
ScrFI CCNGG 2 cut(s) 428, 1025
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 2 cut(s) 564, 1060
SgrAI CRCCGGYG 2 cut(s) 128, 1042
SinI GGWCC 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 590, 1002
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 4 cut(s) 732, 760, 884, 1157
SspMI CTAG 7 cut(s) 645, 665, 782, 896, 900, 1100, 1168
StyD4I CCNGG 2 cut(s) 426, 1023
TaaI ACNGT 4 cut(s) 577, 635, 859, 1087
TaiI ACGT 3 cut(s) 8, 101, 126
TaqI TCGA 4 cut(s) 42, 239, 842, 1146
TasI AATT 4 cut(s) 732, 760, 884, 1157
TatI WGTACW 2 cut(s) 93, 1018
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 11, 112, 641
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 4 cut(s) 152, 657, 864, 1092
TseFI GTSAC 4 cut(s) 124, 604, 812, 859
TseI GCWGC 2 cut(s) 596, 740
Tsp45I GTSAC 4 cut(s) 124, 604, 812, 859
TspDTI ATGAA 3 cut(s) 209, 897, 1047
TspGWI ACGGA 3 cut(s) 261, 623, 783
TspRI CASTG 4 cut(s) 152, 657, 864, 1092
VpaK11BI GGWCC 1 cut(s) 405
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 1 cut(s) 884
XceI RCATGY 1 cut(s) 942
XmiI GTMKAC 3 cut(s) 692, 1146, 1163
XspI CTAG 7 cut(s) 645, 665, 782, 896, 900, 1100, 1168
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.