Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013722

Physical Location & Seq

Genomic Coordinates Forward (+)

64774100 .. 64776661

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACGTTTGATTCCGGCGATACGAGGCGGAGCCTTGTTATTGAGAAGAAGAATGATCGCAGCAGAAAGCGAATGAGAGTCCAGCGGCTCAAGTACACGTGTCGGACAAAGATCCGGCTGGACGTTAGCGGCGGCGACCAGGAACGCAGCTCCGGAGATCATCAAACTGAGAAGGATGCTGGCAATTCTGTGAAGATAGTATCGGTGTCGTTCTCGTCGAAGTTGGAGAACGACAGGGTCCTGTCGAGTTCTGGAGATGAAACGAGGGACGGGAGTAGGAGGAGTAGCTACGGCGTCGTTTCGGTGGCGGGGAGGAGGAGGGAAATGGAAGACGCGGTTAGAGCGGAGGTAGGGTTTGCGGTCGACGGGAAGTTCGACTTTTTCGGGGTGTACGACGGGCATGGTGGGGTCGACGTAGCGAGGGTTTGCCGGGAGAGGTTCCACGAGGTGGTGGCGGAGGCGGTGGAGATGGAGGTGGTGAAGGGAGTGAAGGAGGAGGTTGATTGGGAGAGGGTGATGGAGGGGTGTTTTCGTAAAATGGATGATGAGGTGAATGGGATCTCAGTAGCCAAGACGGTTGGGTCTACGGCGGTGGCTGCGGTGGTGACTGAGGAGCAGGTTGTGGTGGCCAACTGTGGTGATTGTAGGGCAGTCTTGTCAAGTTCCGGTGGTACTATTGCCTTGGCCTTGTCTAGTGATCATAAGCCTGATAGAGCAGATGAGTTGGAGAGAATTGAAGCTGCGGGTGGGAGGGTGATCAATTGGAATGGAAGCCGTGTTCTAGGGGTGCTTTCCACTTCCAGATCCATAGGTATGAACATATATATATATACATGCACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

281

Amino Acids

30.8

Weight (kDa)

6.18

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	97 - 271	5.8e-37	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31810
malus_domestica	MD01G1220800.v1.1 MD07G1291000.v1.1
prunus_persica	Prupe.2G312300_v2.0.a1
pyrus_communis	pycom01g23030 pycom07g26360
rosa_chinensis	RchiOBHm_Chr1g0381041
rosa_laevigata	RLG00000026250
rosa_multiflora	Rmu_co8392071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278830
rosa_rugosa	Rorug01G0426700 Rorug01G0426800 Rorug01G0426900
rosa_samantha	Rh1AG450500 Rh1BG406800 Rh1CG420600 Rh1DG437300
rosa_wichuraiana	Rw1G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	3 cut(s)	363, 411, 584
AccII	CGCG	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	152
AclWI	GGATC	3 cut(s)	106, 566, 798
AcoI	YGGCCR	1 cut(s)	627
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	3 cut(s)	95, 392, 673
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	2 cut(s)	96, 98
AgsI	TTSAA	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	138
AloI	GAACNNNNNNTCC	2 cut(s)	762, 794
AluBI	AGCT	3 cut(s)	150, 288, 740
AluI	AGCT	3 cut(s)	150, 288, 740
AlwI	GGATC	3 cut(s)	106, 566, 798
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	2 cut(s)	627, 684
ApeKI	GCWGC	4 cut(s)	60, 147, 596, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	6 cut(s)	490, 526, 562, 616, 650, 766
AvaII	GGWCC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	629
BauI	CACGAG	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	72, 159, 583, 727
BccI	CCATC	2 cut(s)	463, 511
BceAI	ACGGC	3 cut(s)	307, 603, 759
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	2 cut(s)	697, 756
BcnI	CCSGG	1 cut(s)	431
BfaI	CTAG	2 cut(s)	693, 782
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	7 cut(s)	61, 86, 130, 133, 148, 597, 741
BlsI	GCNGC	7 cut(s)	62, 87, 131, 134, 149, 598, 742
Bme1390I	CCNGG	2 cut(s)	140, 431
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	32, 239, 440
BmrFI	CCNGG	2 cut(s)	140, 431
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	2 cut(s)	152, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	2 cut(s)	181, 547
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	3 cut(s)	159, 576, 600
BseRI	GAGGAG	5 cut(s)	295, 328, 331, 509, 626
BseXI	GCAGC	4 cut(s)	72, 159, 583, 727
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	629, 686
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	5 cut(s)	15, 115, 153, 430, 666
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	629, 686
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
BspANI	GGCC	2 cut(s)	629, 686
BspCNI	CTCAG	3 cut(s)	160, 575, 601
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	32, 239, 440
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	3 cut(s)	106, 566, 798
BsrBI	CCGCTC	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	577, 635
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	3 cut(s)	168, 562, 609
BstF5I	GGATG	2 cut(s)	181, 547
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	7 cut(s)	58, 114, 160, 561, 700, 759, 806
BstMBI	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 596
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	837
BstSCI	CCNGG	2 cut(s)	138, 429
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	72, 159, 583, 727
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	3 cut(s)	111, 558, 803
BstYI	RGATCY	3 cut(s)	111, 558, 803
BsuRI	GGCC	2 cut(s)	629, 686
BtsCI	GGATG	2 cut(s)	181, 547
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	2 cut(s)	283, 341
Csp6I	GTAC	3 cut(s)	94, 391, 672
CviAII	CATG	2 cut(s)	401, 834
CviQI	GTAC	3 cut(s)	94, 391, 672
DdeI	CTNAG	3 cut(s)	168, 562, 609
DpnI	GATC	7 cut(s)	57, 113, 159, 560, 699, 758, 805
DpnII	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
DraIII	CACNNNGTG	1 cut(s)	448
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	627
EciI	GGCGGA	2 cut(s)	43, 470
Eco130I	CCWWGG	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	238
Eco72I	CACGTG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	2 cut(s)	404, 837
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	400, 833
FauI	CCCGC	2 cut(s)	301, 736
FbaI	TGATCA	2 cut(s)	697, 756
FblI	GTMKAC	3 cut(s)	363, 411, 584
Fnu4HI	GCNGC	7 cut(s)	61, 86, 130, 133, 148, 597, 741
FokI	GGATG	2 cut(s)	188, 554
Fsp4HI	GCNGC	7 cut(s)	61, 86, 130, 133, 148, 597, 741
FspBI	CTAG	2 cut(s)	693, 782
GluI	GCNGC	7 cut(s)	61, 86, 130, 133, 148, 597, 741
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	629, 686
HapII	CCGG	5 cut(s)	15, 115, 153, 430, 666
HgaI	GACGC	2 cut(s)	283, 341
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	404, 837
HincII	GTYRAC	2 cut(s)	364, 412
HindII	GTYRAC	2 cut(s)	364, 412
HinfI	GANTC	2 cut(s)	11, 78
HpaII	CCGG	5 cut(s)	15, 115, 153, 430, 666
HphI	GGTGA	6 cut(s)	490, 526, 562, 616, 650, 766
Hpy166II	GTNNAC	5 cut(s)	96, 364, 391, 412, 585
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	3 cut(s)	153, 252, 801
Hpy8I	GTNNAC	5 cut(s)	96, 364, 391, 412, 585
Hpy99I	CGWCG	5 cut(s)	220, 299, 368, 398, 416
HpyAV	CCTTC	3 cut(s)	166, 475, 484
HpyCH4III	ACNGT	2 cut(s)	577, 635
HpyCH4IV	ACGT	4 cut(s)	5, 98, 123, 414
HpyCH4V	TGCA	1 cut(s)	837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 596
HpyF3I	CTNAG	3 cut(s)	168, 562, 609
HpySE526I	ACGT	4 cut(s)	5, 98, 123, 414
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	404, 837
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	697, 756
Kzo9I	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
LmnI	GCTCC	3 cut(s)	30, 155, 613
Lsp1109I	GCAGC	4 cut(s)	72, 159, 583, 727
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	693, 782
MaeII	ACGT	4 cut(s)	5, 98, 123, 414
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	7 cut(s)	57, 113, 159, 560, 699, 758, 805
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
MboII	GAAGA	4 cut(s)	58, 61, 205, 341
MfeI	CAATTG	1 cut(s)	760
MflI	RGATCY	3 cut(s)	111, 558, 803
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	3 cut(s)	184, 732, 760
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	3 cut(s)	83, 204, 705
Mox20I	TGGCCA	1 cut(s)	629
MroI	TCCGGA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	5 cut(s)	15, 115, 153, 430, 666
MspR9I	CCNGG	2 cut(s)	140, 431
MunI	CAATTG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	341, 596
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
NlaIII	CATG	2 cut(s)	404, 837
NlaIV	GGNNCC	3 cut(s)	32, 239, 440
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	3 cut(s)	215, 372, 390
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	7 cut(s)	62, 87, 131, 134, 149, 598, 742
PleI	GAGTC	1 cut(s)	86
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	32, 239, 440
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	3 cut(s)	111, 558, 803
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	3 cut(s)	95, 392, 673
RsaNI	GTAC	3 cut(s)	94, 391, 672
RseI	CAYNNNNRTG	1 cut(s)	812
SalI	GTCGAC	2 cut(s)	362, 410
SatI	GCNGC	7 cut(s)	61, 86, 130, 133, 148, 597, 741
Sau3AI	GATC	7 cut(s)	55, 111, 157, 558, 697, 756, 803
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	140, 431
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	812
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	184, 732, 760
SspMI	CTAG	2 cut(s)	693, 782
StyD4I	CCNGG	2 cut(s)	138, 429
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	577, 635
TaiI	ACGT	4 cut(s)	8, 101, 126, 417
TaqI	TCGA	5 cut(s)	218, 245, 363, 375, 411
TasI	AATT	3 cut(s)	184, 732, 760
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	3 cut(s)	88, 132, 135
TfiI	GAWTC	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	60, 147, 596, 740
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	2 cut(s)	273, 830
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	238
XceI	RCATGY	1 cut(s)	837
XmiI	GTMKAC	3 cut(s)	363, 411, 584
XspI	CTAG	2 cut(s)	693, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.