MD01G1220800.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
31286401 .. 31291940
5540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1220800.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGAATGGAAAGATGAGGCCACGGAGTTTCGTCATCGAGACCAAGAATGCCCGGCGACAACGACTCAGAGTCCGACGACTGAAGTACACGTGTCAGGCGAAGAAGATCCAGGTGCAGATCACCGGCGGCAGCGGCCAGAAACATGATTCCGAAGATTGCAAGACATTGGAGTTGAAGGAACAAGAGAAAGATGTTGGGAGTTCTATGGAGATATTGTCGGTGTCATTTTCGGCATCGAAAAATGACGTCGTGTTGTCTAGTGGATCCGTGGCCGGATCAGATGAAGGCGGAGAGAAAAGGAGTGGTGAGGGTTCGGAAGAGAGGGGAGGGTATGGCATCGTCTCGGTGAAGGGGATGAGGAAGGAGATGGAAGATGCAGTGAGAGCGGAGGTAGGGTTTGGGAAGTCTGACTTTTACGGGGTGTATGACGGGCACGGTGGGGCTGACGTGGCTGGGGCTTGTAGGGAGAGGATGCATGAGGTGGTGGCGGAGGTGGTGGAAATGGAAGGGACTAAAGGTGATGCGATTGATTGGGAGACGGTGATGGAGGGGTGTTTTGAGAAAATGGATGTGGAGGTGAGTGATATTGCAGCGGCGAGGACGGTTGGGGCGACAGCGGTGGTGGCTTTGGTGATGGAGGAGCAGGTGGTGGTGGCCAATTGTGGCGATTCTAGGGCTGTTTTGTCGAGAGGTGGTGTTGCCTTGGCCTTGTCCAATGACCATAAGCCGGACAGAGTGGATGAGTTGAAGAGAATTGAAGCTGCAGGTGGGAGAGTCATCAACTGGAACGGAAGCCGTGTACTTGGGGTGCTTGCCACTTCCAGATCAATAGGTGACCATTACCTGAGGCCATATGTGATATCAAGACCAGAGGTGACGGTGACCAGGCGAACCGACCAGGATGAATTCCTCATCCTTGCCAGTGACGGGCTGTGGGATGTTATATCAAACGACGTAGCATGTCAGGTTGTTAAAAAGTGTCTTCGTGGCCGAATGAAGAGAATATCCATTCACGACGAACATCGTGTTCTCCTAAATGTAGGAAGTCGCACATCTGAGGCAGCGGCAGTCTTGGTTGACCTAGCTATGGCTCGGGGAAGCAGAGATAACATTAGCGTGATTGTGGTCGACCTCACAAAACCCAGCTCGCTGTAG

Protein Analysis

385

Amino Acids

41.7

Weight (kDa)

6.24

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 111 - 371 1.3e-63 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013722)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 634, 755
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 2 cut(s) 634, 755
AccBSI CCGCTC 1 cut(s) 386
AccI GTMKAC 1 cut(s) 1128
AciI CCGC 8 cut(s) 126, 132, 288, 386, 488, 593, 617, 1064
AclWI GGATC 4 cut(s) 100, 258, 271, 283
AcoI YGGCCR 4 cut(s) 133, 270, 654, 988
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 1 cut(s) 101
AcvI CACGTG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 2 cut(s) 86, 801
AfiI CCNNNNNNNGG 3 cut(s) 727, 927, 1087
AflIII ACRYGT 2 cut(s) 87, 89
AgsI TTSAA 3 cut(s) 175, 748, 758
AhdI GACNNNNNGTC 1 cut(s) 68
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 3 cut(s) 108, 884, 897
AluBI AGCT 3 cut(s) 761, 1085, 1146
AluI AGCT 3 cut(s) 761, 1085, 1146
Alw26I GTCTC 3 cut(s) 32, 346, 530
AlwI GGATC 4 cut(s) 100, 258, 271, 283
Ama87I CYCGRG 1 cut(s) 1092
AoxI GGCC 7 cut(s) 17, 133, 270, 654, 705, 848, 988
ApeKI GCWGC 4 cut(s) 129, 590, 761, 1061
ApoI RAATTY 1 cut(s) 905
AsuC2I CCSGG 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 1092
AxyI CCTNAGG 1 cut(s) 845
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 656
BamHI GGATCC 1 cut(s) 263
BbrPI CACGTG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 974
BbvI GCAGC 4 cut(s) 141, 602, 748, 1073
BccI CCATC 3 cut(s) 361, 538, 628
BceAI ACGGC 1 cut(s) 780
BciT130I CCWGG 3 cut(s) 110, 886, 899
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 3 cut(s) 32, 346, 530
BfaI CTAG 3 cut(s) 258, 672, 1082
BfmI CTRYAG 2 cut(s) 762, 1151
BfuAI ACCTGC 2 cut(s) 634, 755
BisI GCNGC 8 cut(s) 127, 130, 133, 591, 594, 762, 1062, 1065
BlsI GCNGC 8 cut(s) 128, 131, 134, 592, 595, 763, 1063, 1066
Bme1390I CCNGG 4 cut(s) 52, 110, 886, 899
BmeRI GACNNNNNGTC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 1092
BmgBI CACGTC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 4 cut(s) 52, 110, 886, 899
BmsI GCATC 5 cut(s) 242, 345, 364, 462, 511
BpiI GAAGAC 1 cut(s) 974
BpuMI CCSGG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 20, 267, 702
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 380, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 927, 1087
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 788, 921
Bse21I CCTNAGG 1 cut(s) 845
BseBI CCWGG 3 cut(s) 110, 886, 899
BseDI CCNNGG 3 cut(s) 20, 267, 702
BseGI GGATG 7 cut(s) 360, 477, 574, 745, 907, 912, 943
BseLI CCNNNNNNNGG 3 cut(s) 727, 927, 1087
BseMII CTCAG 3 cut(s) 79, 836, 1047
BseNI ACTGG 2 cut(s) 788, 921
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 4 cut(s) 141, 602, 748, 1073
BseYI CCCAGC 2 cut(s) 452, 1142
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 7 cut(s) 19, 135, 272, 656, 707, 850, 990
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 4 cut(s) 52, 123, 273, 728
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 3 cut(s) 727, 927, 1087
BsmAI GTCTC 3 cut(s) 32, 346, 530
BsmBI CGTCTC 2 cut(s) 346, 530
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 7 cut(s) 19, 135, 272, 656, 707, 850, 990
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 1092
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 5 cut(s) 105, 117, 263, 275, 824
BspACI CCGC 8 cut(s) 126, 132, 288, 386, 488, 593, 617, 1064
BspANI GGCC 7 cut(s) 19, 135, 272, 656, 707, 850, 990
BspCNI CTCAG 3 cut(s) 78, 837, 1048
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 2 cut(s) 634, 755
BspPI GGATC 4 cut(s) 100, 258, 271, 283
BspTNI GGTCTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 788, 921
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 20, 267, 702
BssMI GATC 5 cut(s) 105, 117, 263, 275, 824
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 3 cut(s) 110, 886, 899
Bst4CI ACNGT 4 cut(s) 437, 541, 604, 880
Bst6I CTCTTC 3 cut(s) 312, 743, 992
BstACI GRCGYC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 813, 1148
BstDEI CTNAG 3 cut(s) 65, 845, 1056
BstDSI CCRYGG 2 cut(s) 20, 267
BstEII GGTNACC 2 cut(s) 833, 880
BstF5I GGATG 7 cut(s) 360, 477, 574, 745, 907, 912, 943
BstKTI GATC 5 cut(s) 108, 120, 266, 278, 827
BstMAI GTCTC 3 cut(s) 32, 346, 530
BstMBI GATC 5 cut(s) 105, 117, 263, 275, 824
BstMWI GCNNNNNNNGC 4 cut(s) 132, 383, 449, 623
BstNI CCWGG 3 cut(s) 110, 886, 899
BstNSI RCATGY 1 cut(s) 963
BstPI GGTNACC 2 cut(s) 833, 880
BstSCI CCNGG 4 cut(s) 50, 108, 884, 897
BstSFI CTRYAG 2 cut(s) 762, 1151
BstSLI GKGCMC 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 141, 602, 748, 1073
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 2 cut(s) 105, 263
BstYI RGATCY 2 cut(s) 105, 263
Bsu36I CCTNAGG 1 cut(s) 845
BsuRI GGCC 7 cut(s) 19, 135, 272, 656, 707, 850, 990
BtgI CCRYGG 2 cut(s) 20, 267
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 7 cut(s) 360, 477, 574, 745, 907, 912, 943
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 928
BveI ACCTGC 2 cut(s) 634, 755
Cac8I GCNNGC 2 cut(s) 813, 1148
Cfr10I RCCGGY 1 cut(s) 122
Csp6I GTAC 2 cut(s) 85, 800
CviAII CATG 3 cut(s) 143, 476, 960
CviQI GTAC 2 cut(s) 85, 800
DdeI CTNAG 3 cut(s) 65, 845, 1056
DpnI GATC 5 cut(s) 107, 119, 265, 277, 826
DpnII GATC 5 cut(s) 105, 117, 263, 275, 824
DriI GACNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 4 cut(s) 133, 270, 654, 988
Eam1104I CTCTTC 3 cut(s) 312, 743, 992
Eam1105I GACNNNNNGTC 1 cut(s) 68
EarI CTCTTC 3 cut(s) 312, 743, 992
EciI GGCGGA 2 cut(s) 303, 503
Eco130I CCWWGG 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 1092
Eco91I GGTNACC 2 cut(s) 833, 880
EcoO65I GGTNACC 2 cut(s) 833, 880
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 3 cut(s) 108, 884, 897
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 702
EcoT22I ATGCAT 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 2 cut(s) 346, 530
FaeI CATG 3 cut(s) 146, 479, 963
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 523
FatI CATG 3 cut(s) 142, 475, 959
FauNDI CATATG 1 cut(s) 853
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 8 cut(s) 127, 130, 133, 591, 594, 762, 1062, 1065
FokI GGATG 7 cut(s) 367, 484, 581, 752, 899, 914, 950
Fsp4HI GCNGC 8 cut(s) 127, 130, 133, 591, 594, 762, 1062, 1065
FspBI CTAG 3 cut(s) 258, 672, 1082
GluI GCNGC 8 cut(s) 127, 130, 133, 591, 594, 762, 1062, 1065
GsaI CCCAGC 2 cut(s) 456, 1146
HaeIII GGCC 7 cut(s) 19, 135, 272, 656, 707, 850, 990
HapII CCGG 4 cut(s) 52, 123, 273, 728
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 146, 479, 963
HincII GTYRAC 2 cut(s) 1078, 1129
HindII GTYRAC 2 cut(s) 1078, 1129
HinfI GANTC 5 cut(s) 63, 69, 146, 668, 774
HpaII CCGG 4 cut(s) 52, 123, 273, 728
Hpy166II GTNNAC 4 cut(s) 87, 800, 1078, 1129
Hpy188I TCNGA 7 cut(s) 68, 74, 151, 280, 316, 409, 1057
Hpy188III TCNNGA 5 cut(s) 37, 687, 822, 864, 1013
Hpy8I GTNNAC 4 cut(s) 87, 800, 1078, 1129
Hpy99I CGWCG 4 cut(s) 78, 251, 956, 1019
HpyAV CCTTC 5 cut(s) 169, 278, 343, 355, 500
HpyCH4III ACNGT 4 cut(s) 437, 541, 604, 880
HpyCH4IV ACGT 4 cut(s) 89, 246, 447, 954
HpyCH4V TGCA 6 cut(s) 115, 159, 377, 475, 590, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 383, 449, 623
HpyF3I CTNAG 3 cut(s) 65, 845, 1056
HpySE526I ACGT 4 cut(s) 89, 246, 447, 954
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 146, 479, 963
Kzo9I GATC 5 cut(s) 105, 117, 263, 275, 824
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 4 cut(s) 141, 602, 748, 1073
LweI GCATC 5 cut(s) 242, 345, 364, 462, 511
MaeI CTAG 3 cut(s) 258, 672, 1082
MaeII ACGT 4 cut(s) 89, 246, 447, 954
MaeIII GTNAC 4 cut(s) 833, 874, 880, 923
MalI GATC 5 cut(s) 107, 119, 265, 277, 826
MbiI CCGCTC 1 cut(s) 386
MboI GATC 5 cut(s) 105, 117, 263, 275, 824
MboII GAAGA 8 cut(s) 112, 115, 164, 329, 383, 760, 974, 1009
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 2 cut(s) 105, 263
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 3 cut(s) 658, 753, 905
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 3 cut(s) 57, 78, 783
MmeI TCCRAC 1 cut(s) 97
Mox20I TGGCCA 1 cut(s) 656
Mph1103I ATGCAT 1 cut(s) 477
MscI TGGCCA 1 cut(s) 656
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 1 cut(s) 1115
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 4 cut(s) 132, 593, 617, 1064
MspI CCGG 4 cut(s) 52, 123, 273, 728
MspR9I CCNGG 4 cut(s) 52, 110, 886, 899
MunI CAATTG 1 cut(s) 658
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 3 cut(s) 110, 886, 899
MwoI GCNNNNNNNGC 4 cut(s) 132, 383, 449, 623
NciI CCSGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 853
NdeII GATC 5 cut(s) 105, 117, 263, 275, 824
NlaIII CATG 3 cut(s) 146, 479, 963
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 4 cut(s) 833, 874, 880, 923
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 1 cut(s) 963
PaqCI CACCTGC 2 cut(s) 634, 755
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 608
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 146, 668
PkrI GCNGC 8 cut(s) 128, 131, 134, 592, 595, 763, 1063, 1066
PleI GAGTC 3 cut(s) 57, 77, 782
PmaCI CACGTG 1 cut(s) 90
PmlI CACGTG 1 cut(s) 90
PpsI GAGTC 3 cut(s) 57, 77, 782
Ppu21I YACGTR 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 108, 884, 897
PspCI CACGTG 1 cut(s) 90
PspEI GGTNACC 2 cut(s) 833, 880
PspFI CCCAGC 2 cut(s) 452, 1142
PspGI CCWGG 3 cut(s) 108, 884, 897
PspN4I GGNNCC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 105, 263
RsaI GTAC 2 cut(s) 86, 801
RsaNI GTAC 2 cut(s) 85, 800
RseI CAYNNNNRTG 1 cut(s) 1115
SalI GTCGAC 1 cut(s) 1127
SaqAI TTAA 1 cut(s) 972
SatI GCNGC 8 cut(s) 127, 130, 133, 591, 594, 762, 1062, 1065
Sau3AI GATC 5 cut(s) 105, 117, 263, 275, 824
SchI GAGTC 3 cut(s) 57, 78, 783
ScrFI CCNGG 4 cut(s) 52, 110, 886, 899
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 5 cut(s) 242, 345, 364, 462, 511
SfcI CTRYAG 2 cut(s) 762, 1151
SgrAI CRCCGGYG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 1115
Sse9I AATT 3 cut(s) 658, 753, 905
SsiI CCGC 8 cut(s) 126, 132, 288, 386, 488, 593, 617, 1064
SspMI CTAG 3 cut(s) 258, 672, 1082
StyD4I CCNGG 4 cut(s) 50, 108, 884, 897
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 4 cut(s) 437, 541, 604, 880
TaiI ACGT 4 cut(s) 92, 249, 450, 957
TaqI TCGA 4 cut(s) 36, 236, 686, 1128
TasI AATT 3 cut(s) 658, 753, 905
TatI WGTACW 2 cut(s) 84, 799
TauI GCSGC 4 cut(s) 129, 135, 596, 1067
TfiI GAWTC 2 cut(s) 146, 668
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 2 cut(s) 384, 928
TseFI GTSAC 4 cut(s) 833, 874, 880, 923
TseI GCWGC 4 cut(s) 129, 590, 761, 1061
Tsp45I GTSAC 4 cut(s) 833, 874, 880, 923
TspDTI ATGAA 4 cut(s) 17, 297, 918, 1010
TspGWI ACGGA 3 cut(s) 37, 256, 804
TspRI CASTG 2 cut(s) 384, 928
XapI RAATTY 1 cut(s) 905
XceI RCATGY 1 cut(s) 963
XmiI GTMKAC 1 cut(s) 1128
XspI CTAG 3 cut(s) 258, 672, 1082
ZraI GACGTC 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.