Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013722

Physical Location & Seq

Genomic Coordinates Forward (+)

35175364 .. 35177760

Gene Structure 2397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1291000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAATGAAAAGATGAGACGAAAGAGCTACGTCATCGAAGCCAAGAATGCTCGGCGACAGAGACTCGGAGTCCGGCGACTGAAGTACACGTGTCATACGAAGAATATCCAGGTGAAAATCACCGGCGACGACGATCAGAAACATGCTCCAGAAGATCCTAAGTCATTGGAGTTGAAGAAACAAGAGAAAGATGTTGGGACTTCGATGGAGATGTTGTCGGTATCGTTTTCGGAATCGGAAAACGAAGTCGTGTTGTCTAGTGGGTCCGTGGCCGGATCAGATAAAGGAGGAGGGAAAAGGGGTAGTGAGGGTTTGGGAGCGAGGGGAGGGTACGGCGTTGTATCATTGAAGGGGATGAGGAAGGAAATGGAAGATGCAGTGAGAGTGGAGGTAGGGTTTGGGAAATTTGACTTTTACGGGGTGTATGACGGGCACGGTGGGCCCGACGTGGCCGGGGCTTGTAGGGAGAGGATGCATGAGGTGGTGGCAGAGGCGGTGGAAATGGAAGGGATTAAAGGGAAAAATGATGATAAAGGTGATGCCATTGATTGGGAGACGGTGATGGAGGAGTGTTTTGGTAAAATAGATGGGGAGGTGAGTGATATTGCAGCGGCGAGGATGATTGGGGCGACAGCGGTGGTGGCGGTGGTGACGGAGGAGCAGGTGGTGGTGGCCAATTGTGGTGATTCTAGGGCTGTTTTGTCAAGAGGGGGTGTTGCCTTGGCCTTGTCCAATGATCATAAGCCTGACAGAGTTGATGAGTTGAAGAGAATTGAAGCTGCGGGTGGAAGGGTCATCACTTGGAACGGAAACCGTGTACTCGGTGTGCTTGCCACTTCCAGATCAATAGGTGACCATTACCTGAGGCCGTATGTGATATCAAAACCAGAGGTGACGGTGACCAAACGAACCGACCAGGATGAATTCCTCATCCTTGCCAGTGATGGGCTGTGGGATGTTATGTCAAACGACGTAGCATGTCAGGTGGTGAAGAAGTGTCTTGGTGGCCGAATGAGGAGAGTTTCCATTCATGACGAACATCAGGTTCTCCTAAATGTCCGAAGTCGCACATCTGAGGCAGCAGCAGTCTTGGCTGACCTAGCTATGGCTAGGGGAAGCAGAGATAACATTAGTGTGATTGTCGTCGACCTCACAAAAACCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

389

Amino Acids

42.17

Weight (kDa)

6.3

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	110 - 377	5.1e-62	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31810
malus_domestica	MD01G1220800.v1.1 MD07G1291000.v1.1
prunus_persica	Prupe.2G312300_v2.0.a1
pyrus_communis	pycom01g23030 pycom07g26360
rosa_chinensis	RchiOBHm_Chr1g0381041
rosa_laevigata	RLG00000026250
rosa_multiflora	Rmu_co8392071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278830
rosa_rugosa	Rorug01G0426700 Rorug01G0426800 Rorug01G0426900
rosa_samantha	Rh1AG450500 Rh1BG406800 Rh1CG420600 Rh1DG437300
rosa_wichuraiana	Rw1G039260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	1146
AciI	CCGC	5 cut(s)	494, 611, 635, 644, 782
AclWI	GGATC	2 cut(s)	149, 283
AcoI	YGGCCR	4 cut(s)	270, 450, 672, 1006
AcsI	RAATTY	2 cut(s)	404, 923
AcuI	CTGAAG	1 cut(s)	101
AcvI	CACGTG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	86, 332, 819
AfiI	CCNNNNNNNGG	3 cut(s)	549, 945, 1105
AflIII	ACRYGT	2 cut(s)	87, 89
AgsI	TTSAA	4 cut(s)	175, 349, 766, 776
AhdI	GACNNNNNGTC	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	108, 915
AluBI	AGCT	4 cut(s)	27, 779, 1103, 1164
AluI	AGCT	4 cut(s)	27, 779, 1103, 1164
Alw26I	GTCTC	3 cut(s)	10, 55, 548
AlwI	GGATC	2 cut(s)	149, 283
AoxI	GGCC	7 cut(s)	270, 440, 450, 672, 723, 866, 1006
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	4 cut(s)	608, 779, 1079, 1082
ApoI	RAATTY	2 cut(s)	404, 923
AspS9I	GGNCC	3 cut(s)	264, 440, 441
AsuC2I	CCSGG	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	863
BaeGI	GKGCMC	2 cut(s)	435, 444
BalI	TGGCCA	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	620, 766, 1091, 1094
BccI	CCATC	4 cut(s)	199, 556, 581, 938
BceAI	ACGGC	2 cut(s)	349, 853
BciT130I	CCWGG	2 cut(s)	110, 917
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	10, 55, 548
BfaI	CTAG	5 cut(s)	258, 690, 1100, 1110, 1165
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	5 cut(s)	609, 612, 780, 1080, 1083
BlsI	GCNGC	5 cut(s)	610, 613, 781, 1081, 1084
Bme1390I	CCNGG	3 cut(s)	110, 454, 917
Bme18I	GGWCC	1 cut(s)	264
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	3 cut(s)	264, 440, 441
BmiI	GGNNCC	2 cut(s)	265, 442
BmrFI	CCNGG	3 cut(s)	110, 454, 917
BmsI	GCATC	3 cut(s)	364, 462, 529
BpmI	CTGGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	267, 453, 720
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 945, 1105
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	939
Bse21I	CCTNAGG	1 cut(s)	863
BseBI	CCWGG	2 cut(s)	110, 917
BseDI	CCNNGG	3 cut(s)	267, 453, 720
BseGI	GGATG	6 cut(s)	360, 477, 624, 925, 930, 961
BseLI	CCNNNNNNNGG	3 cut(s)	549, 945, 1105
BseMII	CTCAG	2 cut(s)	854, 1065
BseNI	ACTGG	1 cut(s)	939
BseRI	GAGGAG	4 cut(s)	303, 581, 671, 1030
BseSI	GKGCMC	2 cut(s)	435, 444
BseXI	GCAGC	4 cut(s)	620, 766, 1091, 1094
BshFI	GGCC	7 cut(s)	272, 442, 452, 674, 725, 868, 1008
BsiSI	CCGG	4 cut(s)	73, 123, 273, 453
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	3 cut(s)	549, 945, 1105
BsmAI	GTCTC	3 cut(s)	10, 55, 548
BsmBI	CGTCTC	2 cut(s)	10, 548
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	7 cut(s)	272, 442, 452, 674, 725, 868, 1008
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	435, 444
Bsp143I	GATC	5 cut(s)	133, 154, 275, 736, 842
BspACI	CCGC	5 cut(s)	494, 611, 635, 644, 782
BspANI	GGCC	7 cut(s)	272, 442, 452, 674, 725, 868, 1008
BspCNI	CTCAG	2 cut(s)	855, 1066
BspHI	TCATGA	1 cut(s)	1030
BspLI	GGNNCC	2 cut(s)	265, 442
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	149, 283
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	939
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	267, 453, 720
BssMI	GATC	5 cut(s)	133, 154, 275, 736, 842
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	110, 917
Bst4CI	ACNGT	4 cut(s)	437, 559, 815, 898
Bst6I	CTCTTC	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	3 cut(s)	159, 863, 1074
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	2 cut(s)	851, 898
BstF5I	GGATG	6 cut(s)	360, 477, 624, 925, 930, 961
BstKTI	GATC	5 cut(s)	136, 157, 278, 739, 845
BstMAI	GTCTC	3 cut(s)	10, 55, 548
BstMBI	GATC	5 cut(s)	133, 154, 275, 736, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 439, 641, 1091, 1100
BstNI	CCWGG	2 cut(s)	110, 917
BstNSI	RCATGY	2 cut(s)	146, 981
BstPI	GGTNACC	2 cut(s)	851, 898
BstSCI	CCNGG	3 cut(s)	108, 452, 915
BstSLI	GKGCMC	2 cut(s)	435, 444
BstV1I	GCAGC	4 cut(s)	620, 766, 1091, 1094
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	863
BsuRI	GGCC	7 cut(s)	272, 442, 452, 674, 725, 868, 1008
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	6 cut(s)	360, 477, 624, 925, 930, 961
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	384, 946
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	831
CciI	TCATGA	1 cut(s)	1030
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	264, 440, 441
Csp6I	GTAC	3 cut(s)	85, 331, 818
CviAII	CATG	4 cut(s)	143, 476, 978, 1031
CviQI	GTAC	3 cut(s)	85, 331, 818
DdeI	CTNAG	3 cut(s)	159, 863, 1074
DpnI	GATC	5 cut(s)	135, 156, 277, 738, 844
DpnII	GATC	5 cut(s)	133, 154, 275, 736, 842
DriI	GACNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	4 cut(s)	270, 450, 672, 1006
Eam1104I	CTCTTC	1 cut(s)	761
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	761
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	863
Eco91I	GGTNACC	2 cut(s)	851, 898
EcoO65I	GGTNACC	2 cut(s)	851, 898
EcoRI	GAATTC	1 cut(s)	923
EcoRII	CCWGG	2 cut(s)	108, 915
EcoRV	GATATC	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	720
Esp3I	CGTCTC	2 cut(s)	10, 548
FaeI	CATG	4 cut(s)	146, 479, 981, 1034
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	142, 475, 977, 1030
FauI	CCCGC	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	1146
Fnu4HI	GCNGC	5 cut(s)	609, 612, 780, 1080, 1083
FokI	GGATG	6 cut(s)	367, 484, 631, 917, 932, 968
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	609, 612, 780, 1080, 1083
FspBI	CTAG	5 cut(s)	258, 690, 1100, 1110, 1165
GluI	GCNGC	5 cut(s)	609, 612, 780, 1080, 1083
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	7 cut(s)	272, 442, 452, 674, 725, 868, 1008
HapII	CCGG	4 cut(s)	73, 123, 273, 453
Hin1II	CATG	4 cut(s)	146, 479, 981, 1034
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HinfI	GANTC	4 cut(s)	63, 69, 233, 686
HpaII	CCGG	4 cut(s)	73, 123, 273, 453
Hpy166II	GTNNAC	3 cut(s)	87, 818, 1147
Hpy188I	TCNGA	7 cut(s)	68, 138, 232, 238, 280, 1061, 1075
Hpy188III	TCNNGA	4 cut(s)	149, 705, 840, 1031
Hpy8I	GTNNAC	3 cut(s)	87, 818, 1147
Hpy99I	CGWCG	5 cut(s)	131, 134, 449, 974, 1148
HpyAV	CCTTC	4 cut(s)	343, 355, 500, 783
HpyCH4III	ACNGT	4 cut(s)	437, 559, 815, 898
HpyCH4IV	ACGT	4 cut(s)	30, 89, 447, 972
HpyCH4V	TGCA	3 cut(s)	377, 475, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 439, 641, 1091, 1100
HpyF3I	CTNAG	3 cut(s)	159, 863, 1074
HpySE526I	ACGT	4 cut(s)	30, 89, 447, 972
Hsp92II	CATG	4 cut(s)	146, 479, 981, 1034
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	133, 154, 275, 736, 842
LmnI	GCTCC	3 cut(s)	151, 317, 658
Lsp1109I	GCAGC	4 cut(s)	620, 766, 1091, 1094
LweI	GCATC	3 cut(s)	364, 462, 529
MaeI	CTAG	5 cut(s)	258, 690, 1100, 1110, 1165
MaeII	ACGT	4 cut(s)	30, 89, 447, 972
MaeIII	GTNAC	4 cut(s)	649, 851, 892, 898
MalI	GATC	5 cut(s)	135, 156, 277, 738, 844
MboI	GATC	5 cut(s)	133, 154, 275, 736, 842
MboII	GAAGA	6 cut(s)	112, 164, 187, 383, 778, 1003
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	435, 444
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	4 cut(s)	404, 676, 771, 923
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	2 cut(s)	57, 78
Mox20I	TGGCCA	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	1133
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	2 cut(s)	611, 635
MspI	CCGG	4 cut(s)	73, 123, 273, 453
MspR9I	CCNGG	3 cut(s)	110, 454, 917
MunI	CAATTG	1 cut(s)	676
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	110, 917
MwoI	GCNNNNNNNGC	5 cut(s)	47, 439, 641, 1091, 1100
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	133, 154, 275, 736, 842
NlaIII	CATG	4 cut(s)	146, 479, 981, 1034
NlaIV	GGNNCC	2 cut(s)	265, 442
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	4 cut(s)	649, 851, 892, 898
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	2 cut(s)	146, 981
PagI	TCATGA	1 cut(s)	1030
PaqCI	CACCTGC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 441
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	233, 686
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	5 cut(s)	610, 613, 781, 1081, 1084
PleI	GAGTC	2 cut(s)	57, 77
PmaCI	CACGTG	1 cut(s)	90
PmlI	CACGTG	1 cut(s)	90
PpsI	GAGTC	2 cut(s)	57, 77
Ppu21I	YACGTR	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	108, 915
PspCI	CACGTG	1 cut(s)	90
PspEI	GGTNACC	2 cut(s)	851, 898
PspGI	CCWGG	2 cut(s)	108, 915
PspN4I	GGNNCC	2 cut(s)	265, 442
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	264, 440, 441
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	3 cut(s)	86, 332, 819
RsaNI	GTAC	3 cut(s)	85, 331, 818
RseI	CAYNNNNRTG	1 cut(s)	1133
SalI	GTCGAC	1 cut(s)	1145
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	5 cut(s)	609, 612, 780, 1080, 1083
Sau3AI	GATC	5 cut(s)	133, 154, 275, 736, 842
Sau96I	GGNCC	3 cut(s)	264, 440, 441
SchI	GAGTC	2 cut(s)	57, 78
ScrFI	CCNGG	3 cut(s)	110, 454, 917
SduI	GDGCHC	2 cut(s)	435, 444
SfaNI	GCATC	3 cut(s)	364, 462, 529
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	1133
Sse9I	AATT	4 cut(s)	404, 676, 771, 923
SsiI	CCGC	5 cut(s)	494, 611, 635, 644, 782
SspMI	CTAG	5 cut(s)	258, 690, 1100, 1110, 1165
StyD4I	CCNGG	3 cut(s)	108, 452, 915
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	4 cut(s)	437, 559, 815, 898
TaiI	ACGT	4 cut(s)	33, 92, 450, 975
TaqI	TCGA	3 cut(s)	36, 203, 1146
TasI	AATT	4 cut(s)	404, 676, 771, 923
TatI	WGTACW	2 cut(s)	84, 817
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	233, 686
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	384, 946
TseFI	GTSAC	4 cut(s)	649, 851, 892, 898
TseI	GCWGC	4 cut(s)	608, 779, 1079, 1082
Tsp45I	GTSAC	4 cut(s)	649, 851, 892, 898
TspDTI	ATGAA	4 cut(s)	17, 21, 936, 1019
TspGWI	ACGGA	3 cut(s)	256, 668, 822
TspRI	CASTG	2 cut(s)	384, 946
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	2 cut(s)	404, 923
XceI	RCATGY	2 cut(s)	146, 981
XmiI	GTMKAC	1 cut(s)	1146
XspI	CTAG	5 cut(s)	258, 690, 1100, 1110, 1165
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.