Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011598

Physical Location & Seq

Genomic Coordinates Reverse (-)

22983663 .. 22984805

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31862.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGTGGAAAGAGAGAGTCAATCCGCAGGGCGTTCTTGGTACTTAAGGACCTTTGCAGGCGTGAAGCAGACTGGAAATCATATATTGTCGCTTGTGATGAAGATGCAGATTTGAAATCCTTTGACGCCGACGTCCAAAGCCGAACCACAAAGGTCATCAGCACCCTTCAGAATGGAGGTGTCTCAACTGATTATGTGAATGAAGCCATAGCGTACGTGACAGATTTTAACAAGCACACTGTGGACGCAATCAGGGTTTGCAGAGAAGACATAACGAGTGGTGCATGGAAGCATAAGAAGAAGAAGATGGCGATGAGGAAAGAAACCTTCAAGGTGGTGGTCGAGGAGTACGTCCACAACAGCGAGGAGATGCTGGATTTCTGCTCCGTTTTGGACAAGTTTCTCAAATCGGCTCGCAACAACCATTTGGAGATTGATCAATTGATTCAACAATGCGAGATGGAGATTGCTGATCCTAAGGGAGGGAATAACTTGCAGGCCAAGCATCAAGGCCTGATCGATAAACTGAAACTCGAATATGTGAAGCTGGGAAAGAAGCAGAAGAGCGTTCGCGCATGGAAGAAGGCGGTGATTATGATATTCATCACCACGGTGGCTGCTCAGTTTATTACTGCGGCCGCAGCACTAGCTATGGCTAATCCAGTTGTTGCAGCAGCTACAGCTGCCTCCATTGCCCCAGTAATCGCTGGACATCACTGGGCTCTTGGTTTGATAACAGAATACGAAAAGAGTATGGAGGTTAACCACATGATGCTGGACACAATGCGTGATGCAAGTGTGTTTTGCATCAAGGAGTTGGGAGACGTGAAATTTCTCATCGATAAGGTTGTCAATGAGATTGATGCTATCCTTTTTCATGATTGTTATATTGGTTCTGCCATAGAACAGCAAGTGGAAAACGCTATTAAGAGTATTAAGAGCAAGTTGGACATGTTTCTGAAGAAAATTGAGGAATTGGAGAAGAAAGGAGAGACTTGCAGCTACGAGGTAATAGAATCAAGGGGTAAGGTGGTGAGGAGCATGAAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

351

Amino Acids

39.42

Weight (kDa)

8.0

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	38 - 161	1.4e-11	Protein of unknown function (DUF677)
DUF677	PF05055	169 - 344	1.6e-20	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31862
prunus_persica	Prupe.8G103700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395591 RchiOBHm_Chr4g0419891 RchiOBHm_Chr4g0420001
rosa_laevigata	RLG00000007796
rosa_multiflora	Rmu_sc0000720.1_g000017 Rmu_sc0003990.1_g000004 Rmu_sc0008487.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362650 Rroxscaffold_5G00362670 Rroxscaffold_5G00362700 Rroxscaffold_5G00362720
rosa_rugosa	Rorug04G0161000 Rorug04G0161100
rosa_samantha	Rh4AG222200 Rh4BG224400 Rh4DG221200
rosa_wichuraiana	Rw4G019140 Rw4G019150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	573
AciI	CCGC	4 cut(s)	25, 587, 635, 639
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	2 cut(s)	152, 980
AcyI	GRCGYC	2 cut(s)	126, 132
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	3 cut(s)	42, 215, 350
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	951
AgsI	TTSAA	3 cut(s)	115, 331, 449
AjiI	CACGTC	1 cut(s)	826
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	5 cut(s)	547, 650, 677, 683, 1002
AluI	AGCT	5 cut(s)	547, 650, 677, 683, 1002
Alw26I	GTCTC	3 cut(s)	187, 816, 986
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	498, 511, 636
ApeKI	GCWGC	6 cut(s)	617, 641, 671, 674, 683, 999
ApoI	RAATTY	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	598, 601, 1045
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	604, 653, 670, 683, 686, 1011
BccI	CCATC	2 cut(s)	301, 454
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	3 cut(s)	187, 816, 986
BfaI	CTAG	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	8 cut(s)	618, 636, 639, 642, 672, 675, 684, 1000
BlsI	GCNGC	8 cut(s)	619, 637, 640, 643, 673, 676, 685, 1001
Bme18I	GGWCC	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	49
BmrI	ACTGGG	2 cut(s)	692, 727
BmsI	GCATC	7 cut(s)	94, 360, 514, 762, 781, 816, 853
BmuI	ACTGGG	2 cut(s)	692, 727
BpiI	GAAGAC	1 cut(s)	273
Bsa29I	ATCGAT	2 cut(s)	519, 840
BsaAI	YACGTR	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	602
BsaHI	GRCGYC	2 cut(s)	126, 132
BsaJI	CCNNGG	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	4 cut(s)	77, 662, 698, 722
Bse21I	CCTNAGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	602
BseCI	ATCGAT	2 cut(s)	519, 840
BseDI	CCNNGG	1 cut(s)	609
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	4 cut(s)	77, 662, 698, 722
BseRI	GAGGAG	3 cut(s)	359, 380, 1051
BseX3I	CGGCCG	1 cut(s)	636
BseXI	GCAGC	6 cut(s)	604, 653, 670, 683, 686, 1011
BseYI	CCCAGC	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	573
Bsh1285I	CGRYCG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	500, 513, 638
BshVI	ATCGAT	2 cut(s)	519, 840
BsiEI	CGRYCG	1 cut(s)	639
BsiWI	CGTACG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	3 cut(s)	187, 816, 986
BsmBI	CGTCTC	1 cut(s)	816
BsnI	GGCC	3 cut(s)	500, 513, 638
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	436, 472, 516
BspACI	CCGC	4 cut(s)	25, 587, 635, 639
BspANI	GGCC	3 cut(s)	500, 513, 638
BspCNI	CTCAG	1 cut(s)	634
BspDI	ATCGAT	2 cut(s)	519, 840
BspFNI	CGCG	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	877
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	4 cut(s)	77, 662, 698, 722
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	3 cut(s)	436, 472, 516
BssNI	GRCGYC	2 cut(s)	126, 132
Bst4CI	ACNGT	2 cut(s)	241, 613
Bst6I	CTCTTC	1 cut(s)	557
BstACI	GRCGYC	2 cut(s)	126, 132
BstAFI	CTTAAG	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	59, 415, 498
BstDEI	CTNAG	2 cut(s)	477, 621
BstDSI	CCRYGG	1 cut(s)	609
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	3 cut(s)	439, 475, 519
BstMAI	GTCTC	3 cut(s)	187, 816, 986
BstMBI	GATC	3 cut(s)	436, 472, 516
BstMCI	CGRYCG	1 cut(s)	639
BstMWI	GCNNNNNNNGC	6 cut(s)	502, 641, 647, 680, 683, 692
BstNSI	RCATGY	1 cut(s)	955
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	6 cut(s)	604, 653, 670, 683, 686, 1011
BstV2I	GAAGAC	1 cut(s)	273
BstZI	CGGCCG	1 cut(s)	636
Bsu15I	ATCGAT	2 cut(s)	519, 840
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	500, 513, 638
BsuTUI	ATCGAT	2 cut(s)	519, 840
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	826
BtsIMutI	CAGTG	2 cut(s)	237, 715
Cac8I	GCNNGC	3 cut(s)	59, 415, 498
CciI	TCATGA	1 cut(s)	877
CciNI	GCGGCCGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	575
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	2 cut(s)	519, 840
CseI	GACGC	2 cut(s)	134, 254
Csp6I	GTAC	3 cut(s)	41, 214, 349
CviAII	CATG	6 cut(s)	285, 576, 769, 878, 952, 1042
CviQI	GTAC	3 cut(s)	41, 214, 349
DdeI	CTNAG	2 cut(s)	477, 621
DpnI	GATC	3 cut(s)	438, 474, 518
DpnII	GATC	3 cut(s)	436, 472, 516
DraIII	CACNNNGTG	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	636
EagI	CGGCCG	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EclXI	CGGCCG	1 cut(s)	636
Eco147I	AGGCCT	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	636
Eco57I	CTGAAG	2 cut(s)	152, 980
Eco81I	CCTNAGG	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	816
FaeI	CATG	6 cut(s)	288, 579, 772, 881, 955, 1045
FatI	CATG	6 cut(s)	284, 575, 768, 877, 951, 1041
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	8 cut(s)	618, 636, 639, 642, 672, 675, 684, 1000
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	8 cut(s)	618, 636, 639, 642, 672, 675, 684, 1000
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	8 cut(s)	618, 636, 639, 642, 672, 675, 684, 1000
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	500, 513, 638
HgaI	GACGC	2 cut(s)	134, 254
HhaI	GCGC	1 cut(s)	575
Hin1I	GRCGYC	2 cut(s)	126, 132
Hin1II	CATG	6 cut(s)	288, 579, 772, 881, 955, 1045
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	3 cut(s)	17, 445, 1016
HpaI	GTTAAC	1 cut(s)	763
HphI	GGTGA	3 cut(s)	598, 601, 1045
Hpy166II	GTNNAC	3 cut(s)	244, 355, 763
Hpy188I	TCNGA	2 cut(s)	171, 960
Hpy188III	TCNNGA	1 cut(s)	878
Hpy8I	GTNNAC	3 cut(s)	244, 355, 763
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	176, 337, 577
HpyCH4III	ACNGT	2 cut(s)	241, 613
HpyCH4IV	ACGT	4 cut(s)	132, 216, 351, 825
HpyCH4V	TGCA	9 cut(s)	57, 107, 261, 284, 496, 671, 794, 807, 999
HpyF10VI	GCNNNNNNNGC	6 cut(s)	502, 641, 647, 680, 683, 692
HpyF3I	CTNAG	2 cut(s)	477, 621
HpySE526I	ACGT	4 cut(s)	132, 216, 351, 825
Hsp92I	GRCGYC	2 cut(s)	126, 132
Hsp92II	CATG	6 cut(s)	288, 579, 772, 881, 955, 1045
HspAI	GCGC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	436
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	436, 472, 516
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	2 cut(s)	389, 1038
Lsp1109I	GCAGC	6 cut(s)	604, 653, 670, 683, 686, 1011
LweI	GCATC	7 cut(s)	94, 360, 514, 762, 781, 816, 853
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	4 cut(s)	132, 216, 351, 825
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	438, 474, 518
MboI	GATC	3 cut(s)	436, 472, 516
MboII	GAAGA	9 cut(s)	113, 278, 310, 313, 316, 574, 592, 973, 994
MfeI	CAATTG	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	4 cut(s)	440, 830, 966, 974
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	927
MseI	TTAA	5 cut(s)	45, 228, 762, 927, 936
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	683
MspCI	CTTAAG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	6 cut(s)	502, 641, 647, 680, 683, 692
NdeII	GATC	3 cut(s)	436, 472, 516
NlaIII	CATG	6 cut(s)	288, 579, 772, 881, 955, 1045
NmuCI	GTSAC	1 cut(s)	217
NotI	GCGGCCGC	1 cut(s)	636
NspI	RCATGY	1 cut(s)	955
OliI	CACNNNNGTG	1 cut(s)	611
PagI	TCATGA	1 cut(s)	877
PceI	AGGCCT	1 cut(s)	513
PciI	ACATGT	1 cut(s)	951
PciSI	GCTCTTC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	445, 1016
Pfl23II	CGTACG	1 cut(s)	213
PkrI	GCNGC	8 cut(s)	619, 637, 640, 643, 673, 676, 685, 1001
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	547
PspLI	CGTACG	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	3 cut(s)	42, 215, 350
RsaNI	GTAC	3 cut(s)	41, 214, 349
RseI	CAYNNNNRTG	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	5 cut(s)	45, 228, 762, 927, 936
SatI	GCNGC	8 cut(s)	618, 636, 639, 642, 672, 675, 684, 1000
Sau3AI	GATC	3 cut(s)	436, 472, 516
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	7 cut(s)	94, 360, 514, 762, 781, 816, 853
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	4 cut(s)	440, 830, 966, 974
SseBI	AGGCCT	1 cut(s)	513
SsiI	CCGC	4 cut(s)	25, 587, 635, 639
SspMI	CTAG	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	241, 613
TaiI	ACGT	4 cut(s)	135, 219, 354, 828
TaqI	TCGA	4 cut(s)	342, 519, 534, 840
TasI	AATT	4 cut(s)	440, 830, 966, 974
TauI	GCSGC	2 cut(s)	638, 641
TfiI	GAWTC	2 cut(s)	445, 1016
Tru1I	TTAA	5 cut(s)	45, 228, 762, 927, 936
Tru9I	TTAA	5 cut(s)	45, 228, 762, 927, 936
TscAI	CASTG	2 cut(s)	244, 722
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	6 cut(s)	617, 641, 671, 674, 683, 999
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	114, 216, 592, 866
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	2 cut(s)	244, 722
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	955
XspI	CTAG	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.