Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000720.1

Orthogroup ID

OG0011598

Physical Location & Seq

Genomic Coordinates Forward (+)

54816 .. 55955

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000720.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgggtggaaagagagagttaatccgcaggtcgtggatgtcacttaaggacctttgcaggcgtgaagcagactggaactcatataaggtcgcttgcgaggaagatgcagatttgaaatcctttgacgccgacgtccaaagccgaaccacaaaggtcatcagcacccttcagaatggaggtgtttcaactgattatgtgagtgatgccatagcatatgtgacagaatttaacaagcagactgtggacgcaatcagggtgtgcagagaagatataacgagtggtgcgtggaagaagaagaagaagaagatgaagagtgaagaaagctttaaggtggtggtggaggagtacgtcgacaacagccaggagatgctggatttctgctctgtattggacaagttcctgaaatcggctcgcaacaaccattttgagattgaacaagtaattcaacagtgcgagatggagactgatcccgagggaggaaataagtacgtgaggatttcgaggaaattgaagagtctcaaggctagtgcacaccattacgattctgcaaacagattactagaaaagattcaaagcttgcaggccaagaatcaagggctgatcgataaactgaaaattgaatatgagaagctggcaaacaagcggaagagcgttcgcgcttggaagaaggcggtgaatatgatattcatcaccacagtggctgcccaagttatttctgcagtcgcggtgctagctatggctaatccagctgcttctgcagctattgctgtttccattgccccagtaattgctggacatcactgggctcttggtttgctggcagaatacgaaaaaagtttgaatgatgacaaagtgatactgcaaacaatgcatgatgcaagtgtgttttgcatcaaggagttgggcgacgtaaagtttctcatcgataagcttgtaaatgagatcgatgctgtcttgtttcacgattgtcatgctgattctgccatggaggagggacaagtggaaaacgctatcaagaatattaagagtaagctggacatgtttctcaagaaaattgagatattggaggaaaaagcagaaacttgcagctctgaggtattgaaatcaagggatcaggttgtgaggagcatgaaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

379

Amino Acids

42.72

Weight (kDa)

7.56

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31862
prunus_persica	Prupe.8G103700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395591 RchiOBHm_Chr4g0419891 RchiOBHm_Chr4g0420001
rosa_laevigata	RLG00000007796
rosa_multiflora	Rmu_sc0000720.1_g000017 Rmu_sc0003990.1_g000004 Rmu_sc0008487.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362650 Rroxscaffold_5G00362670 Rroxscaffold_5G00362700 Rroxscaffold_5G00362720
rosa_rugosa	Rorug04G0161000 Rorug04G0161100
rosa_samantha	Rh4AG222200 Rh4BG224400 Rh4DG221200
rosa_wichuraiana	Rw4G019140 Rw4G019150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	2 cut(s)	657, 725
AciI	CCGC	4 cut(s)	25, 643, 671, 725
AclWI	GGATC	2 cut(s)	461, 1119
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	2 cut(s)	126, 132
AfaI	GTAC	2 cut(s)	347, 488
AfiI	CCNNNNNNNGG	2 cut(s)	406, 476
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	1038
AgsI	TTSAA	9 cut(s)	115, 186, 434, 446, 511, 572, 620, 841, 1102
AjnI	CCWGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	9 cut(s)	324, 576, 631, 734, 749, 761, 931, 1033, 1089
AluI	AGCT	9 cut(s)	324, 576, 631, 734, 749, 761, 931, 1033, 1089
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	2 cut(s)	455, 521
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	461, 1119
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	4 cut(s)	701, 749, 758, 1086
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	682, 685
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	688, 736, 770, 1098
BccI	CCATC	1 cut(s)	451
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 953, 987
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	455, 521
BfaI	CTAG	3 cut(s)	525, 560, 731
BfmI	CTRYAG	2 cut(s)	717, 756
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	702, 750, 759, 1087
BlsI	GCNGC	4 cut(s)	703, 751, 760, 1088
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	2 cut(s)	776, 811
BmsI	GCATC	6 cut(s)	94, 193, 357, 865, 900, 937
BmtI	GCTAGC	1 cut(s)	734
BmuI	ACTGGG	2 cut(s)	776, 811
BpuEI	CTTGAG	2 cut(s)	503, 1031
Bsa29I	ATCGAT	3 cut(s)	603, 924, 945
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	126, 132
BsaJI	CCNNGG	2 cut(s)	471, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 476
Bse1I	ACTGG	3 cut(s)	77, 782, 806
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	362
BseCI	ATCGAT	3 cut(s)	603, 924, 945
BseDI	CCNNGG	2 cut(s)	471, 984
BseGI	GGATG	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	2 cut(s)	406, 476
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	1 cut(s)	1083
BseNI	ACTGG	3 cut(s)	77, 782, 806
BseRI	GAGGAG	3 cut(s)	356, 1004, 1138
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	4 cut(s)	688, 736, 770, 1098
BsgI	GTGCAG	1 cut(s)	280
Bsh1236I	CGCG	2 cut(s)	657, 725
BshFI	GGCC	1 cut(s)	584
BshVI	ATCGAT	3 cut(s)	603, 924, 945
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	1008
BslI	CCNNNNNNNGG	2 cut(s)	406, 476
BsmAI	GTCTC	2 cut(s)	455, 521
BsmFI	GGGAC	1 cut(s)	1008
BsnI	GGCC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	532, 808
Bsp143I	GATC	4 cut(s)	466, 600, 942, 1111
Bsp19I	CCATGG	1 cut(s)	984
BspACI	CCGC	4 cut(s)	25, 643, 671, 725
BspANI	GGCC	1 cut(s)	584
BspCNI	CTCAG	1 cut(s)	1084
BspDI	ATCGAT	3 cut(s)	603, 924, 945
BspFNI	CGCG	2 cut(s)	657, 725
BspMAI	CTGCAG	2 cut(s)	721, 760
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	461, 1119
BspQI	GCTCTTC	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	3 cut(s)	77, 782, 806
BssECI	CCNNGG	2 cut(s)	471, 984
BssMI	GATC	4 cut(s)	466, 600, 942, 1111
BssNI	GRCGYC	2 cut(s)	126, 132
BssT1I	CCWWGG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	241, 450, 697
Bst6I	CTCTTC	3 cut(s)	305, 506, 641
BstACI	GRCGYC	2 cut(s)	126, 132
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	2 cut(s)	764, 868
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	8 cut(s)	59, 94, 412, 578, 582, 633, 732, 819
BstDEI	CTNAG	1 cut(s)	1092
BstDSI	CCRYGG	1 cut(s)	984
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	657, 725
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	4 cut(s)	469, 603, 945, 1114
BstMAI	GTCTC	2 cut(s)	455, 521
BstMBI	GATC	4 cut(s)	466, 600, 942, 1111
BstMWI	GCNNNNNNNGC	7 cut(s)	731, 746, 755, 758, 764, 868, 980
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	2 cut(s)	717, 756
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	2 cut(s)	657, 725
BstV1I	GCAGC	4 cut(s)	688, 736, 770, 1098
Bsu15I	ATCGAT	3 cut(s)	603, 924, 945
BsuRI	GGCC	1 cut(s)	584
BsuTUI	ATCGAT	3 cut(s)	603, 924, 945
BtgI	CCRYGG	1 cut(s)	984
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	455, 702, 799
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	8 cut(s)	59, 94, 412, 578, 582, 633, 732, 819
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	3 cut(s)	603, 924, 945
CseI	GACGC	2 cut(s)	134, 254
Csp6I	GTAC	2 cut(s)	346, 487
CviAII	CATG	5 cut(s)	872, 971, 985, 1039, 1129
CviQI	GTAC	2 cut(s)	346, 487
DdeI	CTNAG	1 cut(s)	1092
DpnI	GATC	4 cut(s)	468, 602, 944, 1113
DpnII	GATC	4 cut(s)	466, 600, 942, 1111
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	305, 506, 641
EarI	CTCTTC	3 cut(s)	305, 506, 641
Eco130I	CCWWGG	1 cut(s)	984
Eco24I	GRGCYC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	984
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	5 cut(s)	875, 974, 988, 1042, 1132
FaqI	GGGAC	1 cut(s)	1008
FatI	CATG	5 cut(s)	871, 970, 984, 1038, 1128
FauNDI	CATATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	702, 750, 759, 1087
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	4 cut(s)	702, 750, 759, 1087
FspBI	CTAG	3 cut(s)	525, 560, 731
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	4 cut(s)	702, 750, 759, 1087
HaeIII	GGCC	1 cut(s)	584
HgaI	GACGC	2 cut(s)	134, 254
HhaI	GCGC	1 cut(s)	659
Hin1I	GRCGYC	2 cut(s)	126, 132
Hin1II	CATG	5 cut(s)	875, 974, 988, 1042, 1132
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	3 cut(s)	322, 574, 929
HinfI	GANTC	5 cut(s)	514, 542, 568, 589, 977
HphI	GGTGA	2 cut(s)	682, 685
Hpy166II	GTNNAC	3 cut(s)	244, 352, 530
Hpy188I	TCNGA	2 cut(s)	171, 1093
Hpy188III	TCNNGA	5 cut(s)	400, 470, 962, 1015, 1048
Hpy8I	GTNNAC	3 cut(s)	244, 352, 530
Hpy99I	CGWCG	3 cut(s)	134, 353, 911
HpyAV	CCTTC	2 cut(s)	176, 661
HpyCH4III	ACNGT	3 cut(s)	241, 450, 697
HpyCH4IV	ACGT	4 cut(s)	132, 348, 489, 909
HpyF10VI	GCNNNNNNNGC	7 cut(s)	731, 746, 755, 758, 764, 868, 980
HpyF3I	CTNAG	1 cut(s)	1092
HpySE526I	ACGT	4 cut(s)	132, 348, 489, 909
Hsp92I	GRCGYC	2 cut(s)	126, 132
Hsp92II	CATG	5 cut(s)	875, 974, 988, 1042, 1132
HspAI	GCGC	1 cut(s)	657
Kzo9I	GATC	4 cut(s)	466, 600, 942, 1111
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	1 cut(s)	1125
Lsp1109I	GCAGC	4 cut(s)	688, 736, 770, 1098
LweI	GCATC	6 cut(s)	94, 193, 357, 865, 900, 937
MaeI	CTAG	3 cut(s)	525, 560, 731
MaeII	ACGT	4 cut(s)	132, 348, 489, 909
MaeIII	GTNAC	2 cut(s)	39, 217
MalI	GATC	4 cut(s)	468, 602, 944, 1113
MboI	GATC	4 cut(s)	466, 600, 942, 1111
MhlI	GDGCHC	2 cut(s)	532, 808
MluCI	AATT	6 cut(s)	224, 441, 506, 615, 786, 1053
MlyI	GAGTC	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	873
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	5 cut(s)	20, 45, 228, 327, 1023
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	2 cut(s)	657, 725
MwoI	GCNNNNNNNGC	7 cut(s)	731, 746, 755, 758, 764, 868, 980
NcoI	CCATGG	1 cut(s)	984
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	4 cut(s)	466, 600, 942, 1111
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	5 cut(s)	875, 974, 988, 1042, 1132
NmuCI	GTSAC	2 cut(s)	39, 217
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	1 cut(s)	1042
OliI	CACNNNNGTG	1 cut(s)	695
PciI	ACATGT	1 cut(s)	1038
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	4 cut(s)	542, 568, 589, 977
PkrI	GCNGC	4 cut(s)	703, 751, 760, 1088
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	2 cut(s)	721, 760
PstNI	CAGNNNCTG	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	347, 488
RsaNI	GTAC	2 cut(s)	346, 487
RseI	CAYNNNNRTG	1 cut(s)	695
SalI	GTCGAC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	20, 45, 228, 327, 1023
SatI	GCNGC	4 cut(s)	702, 750, 759, 1087
Sau3AI	GATC	4 cut(s)	466, 600, 942, 1111
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	532, 808
SfaNI	GCATC	6 cut(s)	94, 193, 357, 865, 900, 937
SfcI	CTRYAG	2 cut(s)	717, 756
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	3 cut(s)	44, 518, 1046
SmoI	CTYRAG	3 cut(s)	44, 518, 1046
Sse9I	AATT	6 cut(s)	224, 441, 506, 615, 786, 1053
SsiI	CCGC	4 cut(s)	25, 643, 671, 725
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	3 cut(s)	525, 560, 731
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	3 cut(s)	241, 450, 697
TaiI	ACGT	4 cut(s)	135, 351, 492, 912
TaqI	TCGA	5 cut(s)	351, 500, 603, 924, 945
TasI	AATT	6 cut(s)	224, 441, 506, 615, 786, 1053
TfiI	GAWTC	4 cut(s)	542, 568, 589, 977
Tru1I	TTAA	5 cut(s)	20, 45, 228, 327, 1023
Tru9I	TTAA	5 cut(s)	20, 45, 228, 327, 1023
TscAI	CASTG	3 cut(s)	455, 702, 806
TseFI	GTSAC	2 cut(s)	39, 217
TseI	GCWGC	4 cut(s)	701, 749, 758, 1086
Tsp45I	GTSAC	2 cut(s)	39, 217
TspDTI	ATGAA	2 cut(s)	323, 676
TspRI	CASTG	3 cut(s)	455, 702, 806
Vha464I	CTTAAG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	1042
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	3 cut(s)	525, 560, 731
ZraI	GACGTC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.