Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011598

Physical Location & Seq

Genomic Coordinates Reverse (-)

13448486 .. 13449619

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGAAGCCATGAAACATCAACTGTCTGCACAATTGCTTTGAGGCTATCCAATGCCAAGATTGATGGGCAGTTGATATCATCATATCAGGAAGCTCTCCAGGGTGACGCAGACTTGCAATGTTTTGAAAACACCCTCAAAACCCACATCAAGGCGGTCATCAACACCTTCAGAAACGGAGGCCCTTCAACTGGTTTCTTCAAACAAGTCACAAAATATTTGCGCTATTTGACCGAGCAGAGCGTCCACGCACTCTTGAGATGCAGAGTGATTGGGAACAAGAAGCTTAATAGGGCCAGTGAGGAAAGATTTAAGCTTCTCGCCGACGAGTACACGAACAACAGCTTGCAGATGCTGGATTTCTGTTCTGAATTATATAGGTTCCTAAAGGCAGCTCGTAACACGCATTCATATATCGAATACGTGACTCAAGAGTGCTTTGCAATGGAGACTGCCATGGGAACACGTCACTACGTGAGGATTTCCAAGAGGTTGAAGAGTCTCAGTGCCTCTGGTGATGTCTATGGCAACTATTCTTCTGCTGAAAGGTTGCTCGAAAAGGTTGAGTGTTTGCGCAAGCAGCAGGAACAGATGCTTGAGAAGTTGAGAGTTCAAAACGAGAAGCTCGAGAAGAAGGAGAGCTCTGCTCATACTTGGCGCAAGGTCACGATTATACTGTTCGTTGTTGCCGTGGCCGGGTTGCTTATTTCTATGATTGTGACTGCAGCTCTAGCTATTCCAGCTGTTGCTCCGGCTCTTGGCGCCGCTTTCGTTCCAATGCTAGCAAGCGCAGATTGGATTACCAATTTGTTTGGAACCTTTGAAATTGCTTGTAAGGATCAGCAAGGTGAAAATGTGTTCATGCAAGCCGGAACTAGGGTTTCCATTAAGGAGTTGGGGGACATAAAGTTTCTTATTGATAGGGTTGTGAATGAGATTGATTCGCTCTTGTTCGCTCCAAGCTCCACAATTAAGGAGCAAATAGATTTCACAATGAAGGATATTAAGCTTAAGCTGGAAACGTTTATGAGGGAAATTGAGACTTTGCAGGAGGAAGCAAACAAATGCACCTCTGAAATACTCAAGGCAAGGGATAAGGTTGTGAAGAGCATCAAATTTCTCAACAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

378

Amino Acids

42.63

Weight (kDa)

8.85

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011598)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31862
prunus_persica	Prupe.8G103700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395591 RchiOBHm_Chr4g0419891 RchiOBHm_Chr4g0420001
rosa_laevigata	RLG00000007796
rosa_multiflora	Rmu_sc0000720.1_g000017 Rmu_sc0003990.1_g000004 Rmu_sc0008487.1_g000008
rosa_roxburghii	Rroxscaffold_5G00362650 Rroxscaffold_5G00362670 Rroxscaffold_5G00362700 Rroxscaffold_5G00362720
rosa_rugosa	Rorug04G0161000 Rorug04G0161100
rosa_samantha	Rh4AG222200 Rh4BG224400 Rh4DG221200
rosa_wichuraiana	Rw4G019140 Rw4G019150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	2 cut(s)	155, 765
AclI	AACGTT	1 cut(s)	1022
AclWI	GGATC	1 cut(s)	846
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	1115
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	762
AdeI	CACNNNGTG	1 cut(s)	475
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	5 cut(s)	151, 191, 696, 758, 876
AflII	CTTAAG	1 cut(s)	1010
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	6 cut(s)	128, 189, 202, 496, 614, 824
AjiI	CACGTC	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	3 cut(s)	443, 506, 1034
AlwI	GGATC	1 cut(s)	846
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	181, 294, 693
ApeKI	GCWGC	3 cut(s)	392, 580, 725
ApoI	RAATTY	1 cut(s)	1115
AspLEI	GCGC	5 cut(s)	225, 576, 660, 764, 791
AspS9I	GGNCC	2 cut(s)	182, 294
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	116, 527, 860
AsuNHI	GCTAGC	1 cut(s)	781
AvaI	CYCGRG	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	404, 592, 737
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	674
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	443, 506, 1034
BfaI	CTAG	3 cut(s)	731, 782, 876
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	1010
BisI	GCNGC	4 cut(s)	393, 581, 726, 765
BlsI	GCNGC	4 cut(s)	394, 582, 727, 766
Bme1390I	CCNGG	2 cut(s)	101, 697
BmeT110I	CYCGRG	1 cut(s)	626
BmgBI	CACGTC	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	182, 294
BmiI	GGNNCC	3 cut(s)	383, 763, 817
BmrFI	CCNGG	2 cut(s)	101, 697
BmsI	GCATC	4 cut(s)	251, 342, 582, 1119
BmtI	GCTAGC	1 cut(s)	785
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	4 cut(s)	277, 414, 617, 1067
BpuMI	CCSGG	1 cut(s)	697
BsaAI	YACGTR	2 cut(s)	424, 475
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	100, 456, 690
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 191, 696, 758, 876
Bse1I	ACTGG	2 cut(s)	196, 297
Bse3DI	GCAATG	2 cut(s)	125, 450
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	100, 456, 690
BseLI	CCNNNNNNNGG	5 cut(s)	151, 191, 696, 758, 876
BseMI	GCAATG	2 cut(s)	125, 450
BseMII	CTCAG	1 cut(s)	517
BseNI	ACTGG	2 cut(s)	196, 297
BseXI	GCAGC	3 cut(s)	404, 592, 737
BsgI	GTGCAG	1 cut(s)	13
BshFI	GGCC	3 cut(s)	183, 296, 695
BshNI	GGYRCC	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	3 cut(s)	696, 752, 870
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	5 cut(s)	151, 191, 696, 758, 876
BsmAI	GTCTC	3 cut(s)	443, 506, 1034
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	183, 296, 695
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	1 cut(s)	838
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	155, 765
BspANI	GGCC	3 cut(s)	183, 296, 695
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	383, 763, 817
BspMAI	CTGCAG	1 cut(s)	727
BspOI	GCTAGC	1 cut(s)	785
BspPI	GGATC	1 cut(s)	846
BspQI	GCTCTTC	1 cut(s)	1100
BspT107I	GGYRCC	1 cut(s)	761
BspTI	CTTAAG	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	125, 450
BsrI	ACTGG	2 cut(s)	196, 297
BssECI	CCNNGG	3 cut(s)	100, 456, 690
BssMI	GATC	1 cut(s)	838
BssNI	GRCGYC	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	25, 678
Bst6I	CTCTTC	2 cut(s)	491, 1100
BstACI	GRCGYC	1 cut(s)	762
BstAFI	CTTAAG	1 cut(s)	1010
BstBAI	YACGTR	2 cut(s)	424, 475
BstC8I	GCNNGC	5 cut(s)	347, 578, 783, 787, 867
BstDEI	CTNAG	1 cut(s)	503
BstDSI	CCRYGG	2 cut(s)	456, 690
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	5 cut(s)	225, 576, 660, 764, 791
BstKTI	GATC	1 cut(s)	841
BstMAI	GTCTC	3 cut(s)	443, 506, 1034
BstMBI	GATC	1 cut(s)	838
BstMWI	GCNNNNNNNGC	4 cut(s)	580, 731, 740, 761
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	99, 695
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	404, 592, 737
BsuRI	GGCC	3 cut(s)	183, 296, 695
BtgI	CCRYGG	2 cut(s)	456, 690
BtrI	CACGTC	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	304, 511
Cac8I	GCNNGC	5 cut(s)	347, 578, 783, 787, 867
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	5 cut(s)	225, 576, 660, 764, 791
Cfr13I	GGNCC	2 cut(s)	182, 294
CseI	GACGC	2 cut(s)	116, 232
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	11, 457, 862
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	503
DinI	GGCGCC	1 cut(s)	763
DpnI	GATC	1 cut(s)	840
DpnII	GATC	1 cut(s)	838
DraIII	CACNNNGTG	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	2 cut(s)	491, 1100
EarI	CTCTTC	2 cut(s)	491, 1100
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	644
EgeI	GGCGCC	1 cut(s)	763
EheI	GGCGCC	1 cut(s)	763
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	3 cut(s)	14, 460, 865
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	3 cut(s)	10, 456, 861
Fnu4HI	GCNGC	4 cut(s)	393, 581, 726, 765
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	4 cut(s)	393, 581, 726, 765
FspBI	CTAG	3 cut(s)	731, 782, 876
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	5 cut(s)	224, 575, 659, 763, 790
GluI	GCNGC	4 cut(s)	393, 581, 726, 765
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	765
HaeIII	GGCC	3 cut(s)	183, 296, 695
HapII	CCGG	3 cut(s)	696, 752, 870
HgaI	GACGC	2 cut(s)	116, 232
HhaI	GCGC	5 cut(s)	225, 576, 660, 764, 791
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	3 cut(s)	14, 460, 865
Hin6I	GCGC	5 cut(s)	223, 574, 658, 762, 789
HinP1I	GCGC	5 cut(s)	223, 574, 658, 762, 789
HindIII	AAGCTT	3 cut(s)	284, 314, 1007
HinfI	GANTC	3 cut(s)	427, 499, 941
HpaII	CCGG	3 cut(s)	696, 752, 870
HphI	GGTGA	3 cut(s)	116, 527, 860
Hpy166II	GTNNAC	2 cut(s)	247, 333
Hpy188I	TCNGA	3 cut(s)	173, 370, 1075
Hpy188III	TCNNGA	5 cut(s)	89, 256, 431, 628, 667
Hpy8I	GTNNAC	2 cut(s)	247, 333
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	178, 195, 628, 991
HpyCH4III	ACNGT	2 cut(s)	25, 678
HpyCH4IV	ACGT	4 cut(s)	423, 466, 474, 1022
HpyCH4V	TGCA	9 cut(s)	30, 118, 264, 349, 443, 725, 865, 1048, 1068
HpyF10VI	GCNNNNNNNGC	4 cut(s)	580, 731, 740, 761
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	4 cut(s)	423, 466, 474, 1022
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	14, 460, 865
HspAI	GCGC	5 cut(s)	223, 574, 658, 762, 789
KasI	GGCGCC	1 cut(s)	761
Kzo9I	GATC	1 cut(s)	838
LguI	GCTCTTC	1 cut(s)	1100
LmnI	GCTCC	4 cut(s)	754, 961, 968, 976
Lsp1109I	GCAGC	3 cut(s)	404, 592, 737
LweI	GCATC	4 cut(s)	251, 342, 582, 1119
MaeI	CTAG	3 cut(s)	731, 782, 876
MaeII	ACGT	4 cut(s)	423, 466, 474, 1022
MaeIII	GTNAC	7 cut(s)	104, 208, 398, 424, 467, 664, 718
MalI	GATC	1 cut(s)	840
MboI	GATC	1 cut(s)	838
MboII	GAAGA	5 cut(s)	190, 508, 528, 643, 1117
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	7 cut(s)	33, 371, 805, 825, 969, 1035, 1115
Mly113I	GGCGCC	1 cut(s)	762
MlyI	GAGTC	2 cut(s)	421, 508
MseI	TTAA	6 cut(s)	288, 312, 888, 972, 1005, 1011
MspA1I	CMGCKG	1 cut(s)	743
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	3 cut(s)	696, 752, 870
MspR9I	CCNGG	2 cut(s)	101, 697
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	580, 731, 740, 761
NarI	GGCGCC	1 cut(s)	762
NciI	CCSGG	1 cut(s)	697
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	838
NheI	GCTAGC	1 cut(s)	781
NlaIII	CATG	3 cut(s)	14, 460, 865
NlaIV	GGNNCC	3 cut(s)	383, 763, 817
NmuCI	GTSAC	6 cut(s)	104, 208, 424, 467, 664, 718
NsbI	TGCGCA	1 cut(s)	575
PaeR7I	CTCGAG	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	2 cut(s)	624, 687
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	941
PkrI	GCNGC	4 cut(s)	394, 582, 727, 766
PleI	GAGTC	2 cut(s)	421, 507
PluTI	GGCGCC	1 cut(s)	765
PpsI	GAGTC	2 cut(s)	421, 507
Ppu21I	YACGTR	2 cut(s)	424, 475
Psp124BI	GAGCTC	1 cut(s)	644
Psp1406I	AACGTT	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	383, 763, 817
PspPI	GGNCC	2 cut(s)	182, 294
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	1100
SaqAI	TTAA	6 cut(s)	288, 312, 888, 972, 1005, 1011
SatI	GCNGC	4 cut(s)	393, 581, 726, 765
Sau3AI	GATC	1 cut(s)	838
Sau96I	GGNCC	2 cut(s)	182, 294
SchI	GAGTC	2 cut(s)	421, 508
ScrFI	CCNGG	2 cut(s)	101, 697
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	4 cut(s)	251, 342, 582, 1119
SfcI	CTRYAG	1 cut(s)	723
SfoI	GGCGCC	1 cut(s)	763
Sfr274I	CTCGAG	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	626
SmlI	CTYRAG	6 cut(s)	256, 429, 596, 626, 1010, 1082
SmoI	CTYRAG	6 cut(s)	256, 429, 596, 626, 1010, 1082
Sse9I	AATT	7 cut(s)	33, 371, 805, 825, 969, 1035, 1115
SsiI	CCGC	2 cut(s)	155, 765
SspDI	GGCGCC	1 cut(s)	761
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	3 cut(s)	731, 782, 876
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	99, 695
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	25, 678
TaiI	ACGT	4 cut(s)	426, 469, 477, 1025
TaqI	TCGA	3 cut(s)	417, 555, 627
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	33, 371, 805, 825, 969, 1035, 1115
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	6 cut(s)	288, 312, 888, 972, 1005, 1011
Tru9I	TTAA	6 cut(s)	288, 312, 888, 972, 1005, 1011
TscAI	CASTG	2 cut(s)	304, 511
TseFI	GTSAC	6 cut(s)	104, 208, 424, 467, 664, 718
TseI	GCWGC	3 cut(s)	392, 580, 725
Tsp45I	GTSAC	6 cut(s)	104, 208, 424, 467, 664, 718
TspDTI	ATGAA	4 cut(s)	27, 399, 850, 1010
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	304, 511
Vha464I	CTTAAG	1 cut(s)	1010
XapI	RAATTY	1 cut(s)	1115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	626
XspI	CTAG	3 cut(s)	731, 782, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.