Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010280

Physical Location & Seq

Genomic Coordinates Reverse (-)

23622026 .. 23624385

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAATCCTTGTTCGATCTTCAATTCACTTCTAGTTTTACATCTCTCGGTTTCTTCCTTCTGTGTCATCCATGCCACTCTGGACCAAAACTATGCACAAAAGATTCTAAGCGCAGCCCAGGAAGACAAAAACTGGTTGGTCTCAATAAGAAGGCAAATCCATGAGAACCCAGAACTCAAATTCCAAGAGCACAACACCAGTGCTCTTTTACGCAAGGAGCTAGACAGACTCGGCATCTCTTACTCGTACCCAATTGCCAAAACTGGCATTGTGGCCTATATTGGGACCGGTGCTGGCCCAGTTGTGGCTCTTCGGGCTGACATGGATGCCCTCCCTATGCAAGAGCTTGTTGATTGGGAGCACAAGAGTAAGATTGATGGGAAGATGCATGGTTGTGGTCATGATGCTCACACCACTATGCTTCTAGGGGCTGCTAAGTTGCTTAGTCAACGGAAAGAGAAACTTCAGGGTACGGTTAGACTTATTTTTCAACCTGCTGAGGAGGGAGGTTATGGAGCAGCCGACATGATAAAAGAAGGTGCTCTTGGTGAAGCCGAAGCAATATTTGGGATGCACGTCGATTTTGAGACATCCACAGGAAGCATAGAAACCATTGCAGGGCCACACTTGGCTGCTGTTAGCTTTTTTGAAGCAAAGATAGTCGGTGAAGGAGGGCATGCTGCAGGTCCCCATGACACTGTTGATCCAACACTTGCTGCCTCTTTTGCAATTTTGGCATTGCAGCAGATCATCTCAAGAGAAACGGATCCCCTCCAAAGTCAAGTTCTATCTGTCACTTATGTTCGAGGAGGGACTGCATCCAATGTAATTCCAGACTATGTTGAATTTGGCGGCACATTAAGGAGTCTTACAACAGAAGGCTTGTACCAACTCATGAAGCGATTGAAGGAGGTTATTGAAGGGCAGGCAGCTGTGCATAGATGTACTGCATATGTTGACATGAAAATTGAAGAGTTTCCCCCAATTCCTGCTGTTGTTAATGACGAAAACTTGAATTTGCATGTAAATAGGGTTGCGAAACTTGTGCTTGGTCCTGAGAATGTGAAGGTTGGCAAAAAAGTGATGGCAAGTGAAGACTTTGCTTTCTATCAAGAATTGATTCCTGGAATCATGATCAGCATCGGAATAAGAAATGTGGAAGTGGGTTCAGTTCACTCACCGCACTCCCCTTACTTCTTTCTTGATGAGGGCGTCCTTCCTGTCGGGGCAGCATTACATACTGCCTTGGCTGAGATGTACTTGAACGAGCACCAACATTCCGCTATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010817 GO:0016787 GO:0016810 GO:0042445 GO:0044237 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

431

Amino Acids

46.8

Weight (kDa)

5.6

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	103 - 418	4.4e-41	Peptidase family M20/M25/M40
M20_dimer	PF07687	216 - 310	8.2e-10	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54140
fragaria_vesca	FvH4_7g33061
malus_domestica	MD01G1229800.v1.1
prunus_persica	Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1
pyrus_communis	pycom01g23790
rosa_chinensis	RchiOBHm_Chr1g0383081
rosa_laevigata	RLG00000026134
rosa_multiflora	Rmu_sc0000634.1_g000007 Rmu_sc0008563.1_g000015 Rmu_sc0033623.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277630
rosa_rugosa	Rorug01G0438200 Rorug01G0438300
rosa_samantha	Rh1AG463900 Rh1BG421100 Rh1CG434600 Rh1DG453700
rosa_wichuraiana	Rw1G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	502, 674
AciI	CCGC	3 cut(s)	852, 1181, 1281
AclWI	GGATC	3 cut(s)	698, 761, 774
AcsI	RAATTY	3 cut(s)	179, 845, 1015
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	1212
AfaI	GTAC	5 cut(s)	248, 472, 887, 946, 1259
AfiI	CCNNNNNNNGG	3 cut(s)	282, 304, 618
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	9 cut(s)	22, 491, 650, 845, 907, 920, 971, 1015, 1264
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	117, 1123
AjuI	GAANNNNNNNTTGG	6 cut(s)	528, 549, 560, 581, 768, 800
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	4 cut(s)	220, 346, 642, 932
AluI	AGCT	4 cut(s)	220, 346, 642, 932
Alw21I	GWGCWC	5 cut(s)	192, 205, 363, 544, 1272
Alw26I	GTCTC	2 cut(s)	145, 581
AlwI	GGATC	3 cut(s)	698, 761, 774
AoxI	GGCC	3 cut(s)	273, 295, 620
ApeKI	GCWGC	9 cut(s)	113, 431, 518, 632, 680, 716, 742, 929, 1229
ApoI	RAATTY	3 cut(s)	179, 845, 1015
AsiGI	ACCGGT	1 cut(s)	287
Asp700I	GAANNNNTTC	2 cut(s)	975, 1119
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	6 cut(s)	82, 285, 296, 620, 686, 1052
AsuHPI	GGTGA	3 cut(s)	560, 677, 1170
AvaII	GGWCC	4 cut(s)	82, 285, 686, 1052
BamHI	GGATCC	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	129, 1101
Bbv12I	GWGCWC	5 cut(s)	192, 205, 363, 544, 1272
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	9 cut(s)	125, 418, 530, 619, 667, 703, 754, 941, 1241
BccI	CCATC	2 cut(s)	371, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BciT130I	CCWGG	2 cut(s)	119, 1125
BclI	TGATCA	1 cut(s)	1134
BcoDI	GTCTC	2 cut(s)	145, 581
BfaI	CTAG	3 cut(s)	32, 221, 425
BfmI	CTRYAG	1 cut(s)	681
BfuAI	ACCTGC	2 cut(s)	502, 674
Bme1390I	CCNGG	2 cut(s)	119, 1125
Bme18I	GGWCC	4 cut(s)	82, 285, 686, 1052
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	6 cut(s)	82, 285, 296, 620, 686, 1052
BmiI	GGNNCC	3 cut(s)	286, 688, 768
BmrFI	CCNGG	2 cut(s)	119, 1125
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	7 cut(s)	243, 316, 375, 394, 561, 827, 1149
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	2 cut(s)	129, 1101
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaHI	GRCGYC	1 cut(s)	1212
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	117, 1245
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 304, 618
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	4 cut(s)	137, 198, 268, 299
Bse3DI	GCAATG	2 cut(s)	612, 737
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	2 cut(s)	119, 1125
BseDI	CCNNGG	2 cut(s)	117, 1245
BseGI	GGATG	5 cut(s)	66, 331, 576, 590, 818
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	3 cut(s)	282, 304, 618
BseMI	GCAATG	2 cut(s)	612, 737
BseMII	CTCAG	3 cut(s)	489, 1047, 1242
BseNI	ACTGG	4 cut(s)	137, 198, 268, 299
BseRI	GAGGAG	2 cut(s)	515, 822
BseXI	GCAGC	9 cut(s)	125, 418, 530, 619, 667, 703, 754, 941, 1241
BshFI	GGCC	3 cut(s)	275, 297, 622
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	5 cut(s)	192, 205, 363, 544, 1272
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	3 cut(s)	298, 672, 826
BslI	CCNNNNNNNGG	3 cut(s)	282, 304, 618
BsmAI	GTCTC	2 cut(s)	145, 581
BsmFI	GGGAC	3 cut(s)	298, 672, 826
BsnI	GGCC	3 cut(s)	275, 297, 622
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	5 cut(s)	192, 205, 363, 544, 1272
Bsp143I	GATC	5 cut(s)	15, 703, 747, 766, 1134
BspACI	CCGC	3 cut(s)	852, 1181, 1281
BspANI	GGCC	3 cut(s)	275, 297, 622
BspCNI	CTCAG	3 cut(s)	490, 1048, 1243
BspHI	TCATGA	3 cut(s)	400, 894, 1131
BspLI	GGNNCC	3 cut(s)	286, 688, 768
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	2 cut(s)	502, 674
BspPI	GGATC	3 cut(s)	698, 761, 774
BspQI	GCTCTTC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	612, 737
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	4 cut(s)	137, 198, 268, 299
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	117, 1245
BssMI	GATC	5 cut(s)	15, 703, 747, 766, 1134
BssNI	GRCGYC	1 cut(s)	1212
BssT1I	CCWWGG	1 cut(s)	1245
Bst2UI	CCWGG	2 cut(s)	119, 1125
Bst4CI	ACNGT	3 cut(s)	475, 700, 1290
Bst6I	CTCTTC	2 cut(s)	315, 966
BstACI	GRCGYC	1 cut(s)	1212
BstC8I	GCNNGC	3 cut(s)	295, 678, 927
BstDEI	CTNAG	6 cut(s)	107, 435, 443, 498, 1056, 1251
BstF5I	GGATG	5 cut(s)	66, 331, 576, 590, 818
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	5 cut(s)	18, 706, 750, 769, 1137
BstMAI	GTCTC	2 cut(s)	145, 581
BstMBI	GATC	5 cut(s)	15, 703, 747, 766, 1134
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 725, 734
BstNI	CCWGG	2 cut(s)	119, 1125
BstNSI	RCATGY	2 cut(s)	680, 1025
BstSCI	CCNGG	2 cut(s)	117, 1123
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	9 cut(s)	125, 418, 530, 619, 667, 703, 754, 941, 1241
BstV2I	GAAGAC	2 cut(s)	129, 1101
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	275, 297, 622
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	5 cut(s)	66, 331, 576, 590, 818
BtsIMutI	CAGTG	2 cut(s)	205, 696
BveI	ACCTGC	2 cut(s)	502, 674
Cac8I	GCNNGC	3 cut(s)	295, 678, 927
CciI	TCATGA	3 cut(s)	400, 894, 1131
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	6 cut(s)	82, 285, 296, 620, 686, 1052
CseI	GACGC	1 cut(s)	1201
Csp6I	GTAC	5 cut(s)	247, 471, 886, 945, 1258
CspAI	ACCGGT	1 cut(s)	287
CviQI	GTAC	5 cut(s)	247, 471, 886, 945, 1258
DdeI	CTNAG	6 cut(s)	107, 435, 443, 498, 1056, 1251
DpnI	GATC	5 cut(s)	17, 705, 749, 768, 1136
DpnII	GATC	5 cut(s)	15, 703, 747, 766, 1134
Eam1104I	CTCTTC	2 cut(s)	315, 966
EarI	CTCTTC	2 cut(s)	315, 966
Eco130I	CCWWGG	1 cut(s)	1245
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	4 cut(s)	82, 285, 686, 1052
Eco57I	CTGAAG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	117, 1123
EcoT14I	CCWWGG	1 cut(s)	1245
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	1245
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 528, 560
FaqI	GGGAC	3 cut(s)	298, 672, 826
FauNDI	CATATG	1 cut(s)	952
FbaI	TGATCA	1 cut(s)	1134
FokI	GGATG	5 cut(s)	53, 338, 577, 583, 805
FspBI	CTAG	3 cut(s)	32, 221, 425
GlaI	GCGC	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	275, 297, 622
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	1201
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	1212
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	2 cut(s)	449, 958
HindII	GTYRAC	2 cut(s)	449, 958
HinfI	GANTC	6 cut(s)	4, 103, 228, 865, 1120, 1128
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	560, 677, 1170
Hpy166II	GTNNAC	3 cut(s)	449, 958, 1174
Hpy188I	TCNGA	1 cut(s)	1145
Hpy188III	TCNNGA	9 cut(s)	80, 401, 756, 833, 895, 1055, 1112, 1132, 1202
Hpy8I	GTNNAC	3 cut(s)	449, 958, 1174
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	9 cut(s)	67, 144, 530, 662, 872, 901, 914, 1060, 1226
HpyCH4III	ACNGT	3 cut(s)	475, 700, 1290
HpyCH4IV	ACGT	1 cut(s)	576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 725, 734
HpyF3I	CTNAG	6 cut(s)	107, 435, 443, 498, 1056, 1251
HpySE526I	ACGT	1 cut(s)	576
Hsp92I	GRCGYC	1 cut(s)	1212
HspAI	GCGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	1134
Kzo9I	GATC	5 cut(s)	15, 703, 747, 766, 1134
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	217, 358, 515
Lsp1109I	GCAGC	9 cut(s)	125, 418, 530, 619, 667, 703, 754, 941, 1241
LweI	GCATC	7 cut(s)	243, 316, 375, 394, 561, 827, 1149
MaeI	CTAG	3 cut(s)	32, 221, 425
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	5 cut(s)	17, 705, 749, 768, 1136
MboI	GATC	5 cut(s)	15, 703, 747, 766, 1134
MboII	GAAGA	7 cut(s)	10, 45, 134, 302, 394, 983, 1106
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	5 cut(s)	192, 205, 363, 544, 1272
MlyI	GAGTC	2 cut(s)	222, 874
MmeI	TCCRAC	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	2 cut(s)	975, 1119
MseI	TTAA	2 cut(s)	860, 999
MslI	CAYNNNNRTG	2 cut(s)	393, 416
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	119, 1125
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	2 cut(s)	119, 1125
MwoI	GCNNNNNNNGC	3 cut(s)	314, 725, 734
NdeI	CATATG	1 cut(s)	952
NdeII	GATC	5 cut(s)	15, 703, 747, 766, 1134
NlaIV	GGNNCC	3 cut(s)	286, 688, 768
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	793
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	2 cut(s)	680, 1025
PaeI	GCATGC	1 cut(s)	680
PagI	TCATGA	3 cut(s)	400, 894, 1131
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	2 cut(s)	975, 1119
PfeI	GAWTC	4 cut(s)	4, 103, 1120, 1128
PfoI	TCCNGGA	1 cut(s)	1123
PinAI	ACCGGT	1 cut(s)	287
PleI	GAGTC	2 cut(s)	222, 873
PpsI	GAGTC	2 cut(s)	222, 873
PpuMI	RGGWCCY	1 cut(s)	686
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	117, 1123
PspGI	CCWGG	2 cut(s)	117, 1123
PspN4I	GGNNCC	3 cut(s)	286, 688, 768
PspPI	GGNCC	6 cut(s)	82, 285, 296, 620, 686, 1052
PspPPI	RGGWCCY	1 cut(s)	686
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	5 cut(s)	248, 472, 887, 946, 1259
RsaNI	GTAC	5 cut(s)	247, 471, 886, 945, 1258
RseI	CAYNNNNRTG	2 cut(s)	393, 416
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	860, 999
Sau3AI	GATC	5 cut(s)	15, 703, 747, 766, 1134
Sau96I	GGNCC	6 cut(s)	82, 285, 296, 620, 686, 1052
SchI	GAGTC	2 cut(s)	222, 874
ScrFI	CCNGG	2 cut(s)	119, 1125
SduI	GDGCHC	5 cut(s)	192, 205, 363, 544, 1272
SfaNI	GCATC	7 cut(s)	243, 316, 375, 394, 561, 827, 1149
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	4 cut(s)	82, 285, 686, 1052
SmiMI	CAYNNNNRTG	2 cut(s)	393, 416
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
SphI	GCATGC	1 cut(s)	680
SsiI	CCGC	3 cut(s)	852, 1181, 1281
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	3 cut(s)	32, 221, 425
StyD4I	CCNGG	2 cut(s)	117, 1123
StyI	CCWWGG	1 cut(s)	1245
TaaI	ACNGT	3 cut(s)	475, 700, 1290
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	14, 579, 805
TatI	WGTACW	2 cut(s)	944, 1257
TauI	GCSGC	1 cut(s)	855
TfiI	GAWTC	4 cut(s)	4, 103, 1120, 1128
Tru1I	TTAA	2 cut(s)	860, 999
Tru9I	TTAA	2 cut(s)	860, 999
TscAI	CASTG	2 cut(s)	205, 703
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	9 cut(s)	113, 431, 518, 632, 680, 716, 742, 929, 1229
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	3 cut(s)	17, 911, 977
TspGWI	ACGGA	2 cut(s)	466, 779
TspRI	CASTG	2 cut(s)	205, 703
VpaK11BI	GGWCC	4 cut(s)	82, 285, 686, 1052
XapI	RAATTY	3 cut(s)	179, 845, 1015
XceI	RCATGY	2 cut(s)	680, 1025
XmnI	GAANNNNTTC	2 cut(s)	975, 1119
XspI	CTAG	3 cut(s)	32, 221, 425
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.