Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010280

Physical Location & Seq

Genomic Coordinates Forward (+)

53690295 .. 53692587

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0438200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTAGCTTTGAGCTGCCAGTTTCAACCTGTGGTCTGCATGAGTTATCGAAATGGTAGAGCTAGACCTTCTGCCCTTTGCTCAATGCAACCGTCTCAAAACAATATCAAGGTAATAATAAATGGAGCTGCAAAGGAAATAGGGAGGGCAGCAGTGATTGCCGTGACCAGAGCTCGAGGGATGGAGGTGGCCGGTGCAGTGGATTCGTATCTTGTAGGAGAAGATATTGGGAATGTATGTGACATGGCGGAGCCACTGGAGATACCGATAACGAATGATCTCACCATGGTCTTAGGTTCCATATCACAGTCTAAAGCAACCGGAGTAGTTGTGGATTTCACTGACCCTTCCAAAGTTTATGACAATGTGAAGCAGGCAACAGCATTTGGAATGAGGAGTGTGGTTTATGTGCCAAAAATTAAGTTAGATACAGTATCAGCATTATCTGCACTCTGTGAGAAAGCCAGCATGGGTTGTCTTGTCGCACCGACTCTTTCTATTGGATCTATACTCCTCCAACAAGCTGCAATTTCAGCTTCCTTTCACTATAACAATGTAGAAATTGTAGAATCAAGAGCTAATGCAACGGATCTTCCATCATCAGATGCAACCCAAATTGCCAACAACCTCTCTAACCTTGGCCAGATCTATAACAGAGAAGACATTTCAACAGATGTTAAGGCAAGGGGTCAAGTTCTGGGTGAAGATGGAGTTCGTGTGCATAGCTTAGTCCTTCCAGGGCTTCCCTCCAGTACAACAGTCTACTTCTCTCGCCCAGGAGAGGTTTACACTCTGAAACATGATATCACAGATGTGCAAAGTCTCATGCCAGGCCTAATCTTAGCTATCAGAAAGATTGTTCGCATCAAGAGCCTGGTGTATGGCCTGGAGAAACTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010817 GO:0016787 GO:0016810 GO:0042445 GO:0044237 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

300

Amino Acids

32.06

Weight (kDa)

6.82

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	36 - 163	3.3e-14	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	170 - 300	4.1e-19	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54140
fragaria_vesca	FvH4_7g33061
malus_domestica	MD01G1229800.v1.1
prunus_persica	Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1
pyrus_communis	pycom01g23790
rosa_chinensis	RchiOBHm_Chr1g0383081
rosa_laevigata	RLG00000026134
rosa_multiflora	Rmu_sc0000634.1_g000007 Rmu_sc0008563.1_g000015 Rmu_sc0033623.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277630
rosa_rugosa	Rorug01G0438200 Rorug01G0438300
rosa_samantha	Rh1AG463900 Rh1BG421100 Rh1CG434600 Rh1DG453700
rosa_wichuraiana	Rw1G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	762
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	511, 597
AcoI	YGGCCR	2 cut(s)	189, 640
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	1 cut(s)	781
AgsI	TTSAA	2 cut(s)	26, 669
AjnI	CCWGG	5 cut(s)	736, 775, 829, 873, 885
AleI	CACNNNNGTG	1 cut(s)	812
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	99, 827
AlwI	GGATC	2 cut(s)	511, 597
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	4 cut(s)	189, 640, 832, 883
ApeKI	GCWGC	4 cut(s)	15, 128, 149, 524
AsuHPI	GGTGA	2 cut(s)	274, 713
AvaI	CYCGRG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	2, 115, 161, 511
BccI	CCATC	3 cut(s)	175, 604, 701
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	5 cut(s)	738, 777, 831, 875, 887
BcoDI	GTCTC	2 cut(s)	99, 827
BfaI	CTAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	4 cut(s)	16, 129, 150, 525
BlsI	GCNGC	4 cut(s)	17, 130, 151, 526
Bme1390I	CCNGG	5 cut(s)	738, 777, 831, 875, 887
BmeT110I	CYCGRG	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	252, 298
BmrFI	CCNGG	5 cut(s)	738, 777, 831, 875, 887
BmsI	GCATC	2 cut(s)	595, 873
BpiI	GAAGAC	1 cut(s)	666
BpmI	CTGGAG	2 cut(s)	278, 733
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	285, 637, 737, 775
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	3 cut(s)	19, 261, 750
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	5 cut(s)	738, 777, 831, 875, 887
BseDI	CCNNGG	4 cut(s)	285, 637, 737, 775
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseNI	ACTGG	3 cut(s)	19, 261, 750
BseRI	GAGGAG	2 cut(s)	409, 503
BseXI	GCAGC	4 cut(s)	2, 115, 161, 511
BsgI	GTGCAG	2 cut(s)	216, 432
BshFI	GGCC	4 cut(s)	191, 642, 834, 885
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	192, 321
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	2 cut(s)	99, 827
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	4 cut(s)	191, 642, 834, 885
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	277, 503, 589, 645
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	4 cut(s)	191, 642, 834, 885
BspLI	GGNNCC	2 cut(s)	252, 298
BspPI	GGATC	2 cut(s)	511, 597
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	19, 261, 750
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	4 cut(s)	285, 637, 737, 775
BssMI	GATC	4 cut(s)	277, 503, 589, 645
BssT1I	CCWWGG	2 cut(s)	285, 637
Bst2UI	CCWGG	5 cut(s)	738, 777, 831, 875, 887
Bst4CI	ACNGT	4 cut(s)	93, 309, 433, 760
BstAPI	GCANNNNNTGC	2 cut(s)	158, 446
BstC8I	GCNNGC	2 cut(s)	375, 466
BstDEI	CTNAG	3 cut(s)	292, 727, 841
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	4 cut(s)	280, 506, 592, 648
BstMAI	GTCTC	2 cut(s)	99, 827
BstMBI	GATC	4 cut(s)	277, 503, 589, 645
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 446, 533, 870
BstNI	CCWGG	5 cut(s)	738, 777, 831, 875, 887
BstSCI	CCNGG	5 cut(s)	736, 775, 829, 873, 885
BstV1I	GCAGC	4 cut(s)	2, 115, 161, 511
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	3 cut(s)	503, 589, 645
BstYI	RGATCY	3 cut(s)	503, 589, 645
BsuRI	GGCC	4 cut(s)	191, 642, 834, 885
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	2 cut(s)	159, 204
BtsIMutI	CAGTG	4 cut(s)	159, 204, 254, 339
Cac8I	GCNNGC	2 cut(s)	375, 466
Cfr10I	RCCGGY	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	753
CviAII	CATG	6 cut(s)	40, 244, 286, 469, 800, 826
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	3 cut(s)	292, 727, 841
DpnI	GATC	4 cut(s)	279, 505, 591, 647
DpnII	GATC	4 cut(s)	277, 503, 589, 645
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	2 cut(s)	189, 640
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	285, 637
Eco147I	AGGCCT	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	805
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	5 cut(s)	736, 775, 829, 873, 885
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	285, 637
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	285, 637
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	6 cut(s)	43, 247, 289, 472, 803, 829
FatI	CATG	6 cut(s)	39, 243, 285, 468, 799, 825
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	4 cut(s)	16, 129, 150, 525
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	16, 129, 150, 525
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	4 cut(s)	16, 129, 150, 525
GsuI	CTGGAG	2 cut(s)	278, 733
HaeIII	GGCC	4 cut(s)	191, 642, 834, 885
HapII	CCGG	2 cut(s)	192, 321
Hin1II	CATG	6 cut(s)	43, 247, 289, 472, 803, 829
HinfI	GANTC	3 cut(s)	203, 490, 569
HpaII	CCGG	2 cut(s)	192, 321
HphI	GGTGA	2 cut(s)	274, 713
Hpy166II	GTNNAC	2 cut(s)	763, 787
Hpy188I	TCNGA	3 cut(s)	604, 795, 851
Hpy188III	TCNNGA	2 cut(s)	573, 868
Hpy8I	GTNNAC	2 cut(s)	763, 787
HpyAV	CCTTC	3 cut(s)	78, 357, 743
HpyCH4III	ACNGT	4 cut(s)	93, 309, 433, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 446, 533, 870
HpyF3I	CTNAG	3 cut(s)	292, 727, 841
Hsp92II	CATG	6 cut(s)	43, 247, 289, 472, 803, 829
Kzo9I	GATC	4 cut(s)	277, 503, 589, 645
LmnI	GCTCC	2 cut(s)	125, 250
Lsp1109I	GCAGC	4 cut(s)	2, 115, 161, 511
LweI	GCATC	2 cut(s)	595, 873
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	163, 239
MalI	GATC	4 cut(s)	279, 505, 591, 647
MboI	GATC	4 cut(s)	277, 503, 589, 645
MboII	GAAGA	4 cut(s)	233, 584, 671, 716
MflI	RGATCY	3 cut(s)	503, 589, 645
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	4 cut(s)	417, 528, 561, 615
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	138, 170, 178, 387, 524, 638, 757, 775
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	2 cut(s)	420, 678
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	642
MspI	CCGG	2 cut(s)	192, 321
MspR9I	CCNGG	5 cut(s)	738, 777, 831, 875, 887
MvaI	CCWGG	5 cut(s)	738, 777, 831, 875, 887
MwoI	GCNNNNNNNGC	4 cut(s)	158, 446, 533, 870
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	4 cut(s)	277, 503, 589, 645
NlaIII	CATG	6 cut(s)	43, 247, 289, 472, 803, 829
NlaIV	GGNNCC	2 cut(s)	252, 298
NmuCI	GTSAC	2 cut(s)	163, 239
OliI	CACNNNNGTG	1 cut(s)	812
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	203, 569
PkrI	GCNGC	4 cut(s)	17, 130, 151, 526
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	5 cut(s)	736, 775, 829, 873, 885
PspGI	CCWGG	5 cut(s)	736, 775, 829, 873, 885
PspN4I	GGNNCC	2 cut(s)	252, 298
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	3 cut(s)	503, 589, 645
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
RseI	CAYNNNNRTG	1 cut(s)	812
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	420, 678
SatI	GCNGC	4 cut(s)	16, 129, 150, 525
Sau3AI	GATC	4 cut(s)	277, 503, 589, 645
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	5 cut(s)	738, 777, 831, 875, 887
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	595, 873
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	812
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	417, 528, 561, 615
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	5 cut(s)	736, 775, 829, 873, 885
StyI	CCWWGG	2 cut(s)	285, 637
TaaI	ACNGT	4 cut(s)	93, 309, 433, 760
TaqI	TCGA	2 cut(s)	49, 175
TasI	AATT	4 cut(s)	417, 528, 561, 615
TatI	WGTACW	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	203, 569
Tru1I	TTAA	2 cut(s)	420, 678
Tru9I	TTAA	2 cut(s)	420, 678
TscAI	CASTG	4 cut(s)	159, 204, 261, 346
TseFI	GTSAC	2 cut(s)	163, 239
TseI	GCWGC	4 cut(s)	15, 128, 149, 524
Tsp45I	GTSAC	2 cut(s)	163, 239
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	4 cut(s)	159, 204, 261, 346
XhoI	CTCGAG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	762
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.