Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010280

Physical Location & Seq

Genomic Coordinates Reverse (-)

67972730 .. 67975388

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG463900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCACGGTTGTGGTCATGATGCTCACACCGCTATGCTTCTAGGCGCTGCTAAGTTGCTTAGTCAACGAAAAGAGAAACTTCAGGGTACTGTTAGACTTATTTTTCAACCTGCTGAGGAGGGAGGTGCTGGAGCAGCCGAGATGATAAAAGAGGGTGCTCTTGGTGAAGCGGAAGCAATATTTGGGATGCACGTCGATTATATGATACCCACAGGAAGCATAGCATCCATGGCTGGGCCACACTTGGCTGCTGTTAGCTTCTTTGAAGCAAAAATAATCGGTGAAGGTGGGCATGCTGCAGCTCCCCATATCACTACTGACCCAATACTCGCTGCCTCTTTTGCAATTTCAGCATTGCAGCAGCTCATCTCAAGAGAAACTGATCCCCTCCAAAGTCAAGTTCTGTCTGTCACTTATGTTCGAGGAGGGATGGCATCCAATGTAATTCCAGCCTATGTTGAATTTGGGGGCACATTGAGGAGTCTTACAACGGAAGGCTTGTACCAACTCATGAGGCGATTGAAAGAGGTTATTGAAGGGCAGGCAGCTGTGCATAGATGTATTGCATACGTTGACATGAAAAGTGAAGAGTTTCCCCCATACCCTGCTGTTTTCAATGACGAAAGCTTGAATTCGCATGTAAAGAGGGTTGGAAAACTTGTGCTTGGTCCTGAGAATGTGAAGGTCGGCAAAAAAGTGATGGCAGGTGACGACTTTGCTTTCTATCAAGAATCGATTCCTGGAATCATGATCGGCATCGGAATAAGAAATGAGGAAGTGGGTTCAGTTTACTCACCGCACTCCCCTTACTTCTTTCTTGATGAGGACGTCCTTCCCGTCGGGGCAGCATTACATACTGCCTTGGCTGAGATATACTTGAACGAGCACCAACATTCCGCTATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010817 GO:0016787 GO:0016810 GO:0042445 GO:0044237 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

302

Amino Acids

32.41

Weight (kDa)

5.5

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	1 - 290	5.8e-32	Peptidase family M20/M25/M40
M20_dimer	PF07687	88 - 182	2.4e-10	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54140
fragaria_vesca	FvH4_7g33061
malus_domestica	MD01G1229800.v1.1
prunus_persica	Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1
pyrus_communis	pycom01g23790
rosa_chinensis	RchiOBHm_Chr1g0383081
rosa_laevigata	RLG00000026134
rosa_multiflora	Rmu_sc0000634.1_g000007 Rmu_sc0008563.1_g000015 Rmu_sc0033623.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277630
rosa_rugosa	Rorug01G0438200 Rorug01G0438300
rosa_samantha	Rh1AG463900 Rh1BG421100 Rh1CG434600 Rh1DG453700
rosa_wichuraiana	Rw1G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	695
AatII	GACGTC	1 cut(s)	831
Acc36I	ACCTGC	2 cut(s)	118, 695
AciI	CCGC	4 cut(s)	30, 170, 797, 897
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	461, 631
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	2 cut(s)	88, 503
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	8 cut(s)	107, 266, 461, 523, 536, 616, 631, 880
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	739
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 384, 416
AleI	CACNNNNGTG	1 cut(s)	9
AluBI	AGCT	5 cut(s)	258, 302, 364, 548, 627
AluI	AGCT	5 cut(s)	258, 302, 364, 548, 627
Alw21I	GWGCWC	2 cut(s)	160, 888
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	461, 631
Asp700I	GAANNNNTTC	2 cut(s)	591, 735
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	236, 668
AsuHPI	GGTGA	4 cut(s)	176, 293, 719, 786
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	473
Bbv12I	GWGCWC	2 cut(s)	160, 888
BbvCI	CCTCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	424, 694
BciT130I	CCWGG	1 cut(s)	741
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	2 cut(s)	118, 695
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	668
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	236, 668
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	5 cut(s)	10, 177, 233, 443, 765
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	355
Bsa29I	ATCGAT	1 cut(s)	734
BsaBI	GATNNNNATC	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	228, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	741
BseCI	ATCGAT	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	228, 861
BseGI	GGATG	4 cut(s)	192, 224, 434, 435
BseJI	GATNNNNATC	1 cut(s)	755
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	105, 663, 858
BseRI	GAGGAG	3 cut(s)	131, 438, 493
BseSI	GKGCMC	1 cut(s)	473
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	238
BshVI	ATCGAT	1 cut(s)	734
BsiHKAI	GWGCWC	2 cut(s)	160, 888
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	160, 473, 888
Bsp143I	GATC	2 cut(s)	382, 750
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	4 cut(s)	30, 170, 797, 897
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	3 cut(s)	106, 664, 859
BspDI	ATCGAT	1 cut(s)	734
BspHI	TCATGA	3 cut(s)	16, 510, 747
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	2 cut(s)	118, 695
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	228, 861
BssMI	GATC	2 cut(s)	382, 750
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	2 cut(s)	228, 861
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	8, 91
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	294, 543
BstDEI	CTNAG	5 cut(s)	51, 59, 114, 672, 867
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	192, 224, 434, 435
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	385, 753
BstMBI	GATC	2 cut(s)	382, 750
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 134, 230, 341, 350
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	2 cut(s)	296, 641
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	734
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	192, 224, 434, 435
BveI	ACCTGC	2 cut(s)	118, 695
Cac8I	GCNNGC	2 cut(s)	294, 543
CciI	TCATGA	3 cut(s)	16, 510, 747
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	236, 668
ClaI	ATCGAT	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	87, 502
CviAII	CATG	7 cut(s)	17, 229, 293, 511, 577, 638, 748
CviQI	GTAC	2 cut(s)	87, 502
DdeI	CTNAG	5 cut(s)	51, 59, 114, 672, 867
DpnI	GATC	2 cut(s)	384, 752
DpnII	GATC	2 cut(s)	382, 750
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	2 cut(s)	228, 861
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	228, 861
ErhI	CCWWGG	2 cut(s)	228, 861
FaeI	CATG	7 cut(s)	20, 232, 296, 514, 580, 641, 751
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	7 cut(s)	16, 228, 292, 510, 576, 637, 747
FokI	GGATG	4 cut(s)	199, 211, 421, 442
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	7 cut(s)	20, 232, 296, 514, 580, 641, 751
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	65, 574
HindII	GTYRAC	2 cut(s)	65, 574
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	4 cut(s)	481, 731, 736, 744
HphI	GGTGA	4 cut(s)	176, 293, 719, 786
Hpy166II	GTNNAC	3 cut(s)	65, 574, 790
Hpy188I	TCNGA	1 cut(s)	761
Hpy188III	TCNNGA	7 cut(s)	17, 372, 511, 671, 728, 748, 818
Hpy8I	GTNNAC	3 cut(s)	65, 574, 790
Hpy99I	CGWCG	2 cut(s)	197, 842
HpyAV	CCTTC	5 cut(s)	278, 488, 530, 676, 842
HpyCH4III	ACNGT	2 cut(s)	8, 91
HpyCH4IV	ACGT	3 cut(s)	192, 570, 828
HpyCH4V	TGCA	7 cut(s)	4, 190, 299, 344, 358, 553, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 134, 230, 341, 350
HpyF3I	CTNAG	5 cut(s)	51, 59, 114, 672, 867
HpySE526I	ACGT	3 cut(s)	192, 570, 828
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	7 cut(s)	20, 232, 296, 514, 580, 641, 751
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	382, 750
LmnI	GCTCC	2 cut(s)	131, 307
LweI	GCATC	5 cut(s)	10, 177, 233, 443, 765
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	3 cut(s)	192, 570, 828
MaeIII	GTNAC	2 cut(s)	409, 707
MalI	GATC	2 cut(s)	384, 752
MboI	GATC	2 cut(s)	382, 750
MboII	GAAGA	1 cut(s)	599
MhlI	GDGCHC	3 cut(s)	160, 473, 888
MluCI	AATT	4 cut(s)	345, 444, 461, 631
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	631
MroXI	GAANNNNTTC	2 cut(s)	591, 735
MslI	CAYNNNNRTG	2 cut(s)	9, 32
MspA1I	CMGCKG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	5 cut(s)	29, 134, 230, 341, 350
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	382, 750
NlaIII	CATG	7 cut(s)	20, 232, 296, 514, 580, 641, 751
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	409, 707
NspI	RCATGY	2 cut(s)	296, 641
OliI	CACNNNNGTG	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	296
PagI	TCATGA	3 cut(s)	16, 510, 747
PaqCI	CACCTGC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	834
PdmI	GAANNNNTTC	2 cut(s)	591, 735
PfeI	GAWTC	3 cut(s)	731, 736, 744
PfoI	TCCNGGA	1 cut(s)	739
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	739
PspPI	GGNCC	2 cut(s)	236, 668
PstI	CTGCAG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	2 cut(s)	88, 503
RsaNI	GTAC	2 cut(s)	87, 502
RseI	CAYNNNNRTG	2 cut(s)	9, 32
Sau3AI	GATC	2 cut(s)	382, 750
Sau96I	GGNCC	2 cut(s)	236, 668
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	3 cut(s)	160, 473, 888
SfaNI	GCATC	5 cut(s)	10, 177, 233, 443, 765
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	9, 32
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	4 cut(s)	345, 444, 461, 631
SsiI	CCGC	4 cut(s)	30, 170, 797, 897
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	228, 861
TaaI	ACNGT	2 cut(s)	8, 91
TaiI	ACGT	3 cut(s)	195, 573, 831
TaqI	TCGA	3 cut(s)	195, 421, 734
TasI	AATT	4 cut(s)	345, 444, 461, 631
TfiI	GAWTC	3 cut(s)	731, 736, 744
TseFI	GTSAC	2 cut(s)	409, 707
Tsp45I	GTSAC	2 cut(s)	409, 707
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	2 cut(s)	461, 631
XceI	RCATGY	2 cut(s)	296, 641
XmnI	GAANNNNTTC	2 cut(s)	591, 735
XspI	CTAG	1 cut(s)	41
ZraI	GACGTC	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.