Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010280

Physical Location & Seq

Genomic Coordinates Forward (+)

745203 .. 747570

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAGCCTTGTTCGATTTTCAATTCACTTCTAGTTTTACATCTCTCACTTTCTTCCTTTTGTGTCATCCATGGCACTCGGGACCAAAGCTACGGAGAAGAGATTCTAAACGCAGCCCAGAAAGACAAAAACTGGTTGGTCTCAATAAGAAGGCAAATCCATGAAAACCCAGAACTCGGATTCCAAGAGCATAACACCAGTGCTCTTCTACGCAGAGAGTTGGACCAACTTGGCATCTCTTACTCGTACCCAATTGCCAAAACTGGTATTGTGGCTCAAATTGGGTCCGGTTCTGGCCCCGTTGTTGCTCTTCGGGCTGAAATGGACGCCCTCCCTATGCAAGAGCTTGCTGATTGGGAGCACAAGAGTAAGATTGATGGGAAAATGCACGGATGTGGTCATGATGCTCACACCGCTATGCTTCTAGGCGCTGCTAAGTTGCTTAGTCAACGGAAAGAGAAACTTCAGGGTACTGTTAGACTTATTTTTCAACCTGCTGAGGAGGGAGGTGCTGGAGCAGCTGAGATGATAAAAGAGGGTGCTCTTGGTGAAGCGGAAGCAATATTTGGGATGCACATCGATTATATGATACCCACAGGAAGCATCGCATCCATGGCAGGGCCACACTTGGCTGCTGTTAGCTTCTTTGAAGCAAAAATAATCGGTGAAGGTGGCCATGCTGCAGCTCCCCATATCACTACTGACCCAATACTCGCTGCCTCTTTTGCAATTTCAGCATTGCAGCAGCTCATCTCAAGAGAAACTGATCCACTCCAAAGTCAAGTTCTGTCTGTCACTTTTGTTCGAGGAGGGACTGCATCCAATGTAATTCCAGCCTATGTTGAATTTGGGGGCACATTGAGGAGTCTTACAACGGAAGGCTTGTACCAACTCATGAGGCGATTGAAAGAGGTTATTGAAGGGCAGGCAGCTGTGCATAGATGTATTGCATACGTTGACATGAAAAGTGAAGAGTTTCCCCCATACCCTGCTGTTTTTAATGACGAAAGCTTGAATTCGCATGTAAAGACGGTTGGAAAACTTGTGCTTGGTCCTGAGAATGTGAAGGTCGGCAAAAAAGTGATGGCAGGTGAAGACTTTGCTTTCTATCAAGAATCGATTCCTGGAATCATGATCGGCATCGGAATAAGAAATGAGGAAGTGGGTTCAGTTTACTCACCGCACTCCCCTTACTTCTTTCTTGATGAGGATGTCCTTCCCGTCGGGGCAGCATTACATACTGCCTTGGCTGAGATTTACTTGAACGATCACCAACATTCCGCTATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010817 GO:0016787 GO:0016810 GO:0042445 GO:0044237 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

431

Amino Acids

46.57

Weight (kDa)

5.62

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	103 - 418	2.2e-41	Peptidase family M20/M25/M40
M20_dimer	PF07687	216 - 310	4.3e-11	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54140
fragaria_vesca	FvH4_7g33061
malus_domestica	MD01G1229800.v1.1
prunus_persica	Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1 Prupe.2G320500_v2.0.a1
pyrus_communis	pycom01g23790
rosa_chinensis	RchiOBHm_Chr1g0383081
rosa_laevigata	RLG00000026134
rosa_multiflora	Rmu_sc0000634.1_g000007 Rmu_sc0008563.1_g000015 Rmu_sc0033623.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277630
rosa_rugosa	Rorug01G0438200 Rorug01G0438300
rosa_samantha	Rh1AG463900 Rh1BG421100 Rh1CG434600 Rh1DG453700
rosa_wichuraiana	Rw1G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1079
Acc36I	ACCTGC	2 cut(s)	502, 1079
AciI	CCGC	4 cut(s)	414, 554, 1181, 1281
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	845, 1015
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	3 cut(s)	248, 472, 887
AfiI	CCNNNNNNNGG	2 cut(s)	176, 618
AgsI	TTSAA	8 cut(s)	22, 491, 650, 845, 907, 920, 1015, 1264
AjnI	CCWGG	1 cut(s)	1123
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 768, 800
AleI	CACNNNNGTG	1 cut(s)	393
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	8 cut(s)	90, 346, 521, 642, 686, 748, 932, 1011
AluI	AGCT	8 cut(s)	90, 346, 521, 642, 686, 748, 932, 1011
Alw21I	GWGCWC	3 cut(s)	205, 363, 544
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	3 cut(s)	295, 620, 673
ApoI	RAATTY	2 cut(s)	845, 1015
Asp700I	GAANNNNTTC	3 cut(s)	102, 975, 1119
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	6 cut(s)	82, 223, 285, 296, 620, 1052
AsuHPI	GGTGA	5 cut(s)	560, 677, 1103, 1170, 1262
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	4 cut(s)	82, 223, 285, 1052
BaeGI	GKGCMC	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	1101
Bbv12I	GWGCWC	3 cut(s)	205, 363, 544
BbvCI	CCTCAGC	1 cut(s)	498
BccI	CCATC	2 cut(s)	371, 1078
BciT130I	CCWGG	1 cut(s)	1125
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	32, 425
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	432
BfuAI	ACCTGC	2 cut(s)	502, 1079
Bme1390I	CCNGG	1 cut(s)	1125
Bme18I	GGWCC	4 cut(s)	82, 223, 285, 1052
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	6 cut(s)	82, 223, 285, 296, 620, 1052
BmiI	GGNNCC	3 cut(s)	83, 286, 298
BmrFI	CCNGG	1 cut(s)	1125
BmsI	GCATC	7 cut(s)	243, 394, 561, 612, 617, 827, 1149
BpiI	GAAGAC	1 cut(s)	1101
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	739
Bsa29I	ATCGAT	2 cut(s)	579, 1118
BsaBI	GATNNNNATC	2 cut(s)	575, 1139
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	70, 612, 1245
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 618
Bse1I	ACTGG	3 cut(s)	137, 198, 268
Bse3DI	GCAATG	1 cut(s)	737
Bse8I	GATNNNNATC	2 cut(s)	575, 1139
BseBI	CCWGG	1 cut(s)	1125
BseCI	ATCGAT	2 cut(s)	579, 1118
BseDI	CCNNGG	3 cut(s)	70, 612, 1245
BseGI	GGATG	6 cut(s)	66, 398, 576, 608, 818, 1216
BseJI	GATNNNNATC	2 cut(s)	575, 1139
BseLI	CCNNNNNNNGG	2 cut(s)	176, 618
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	4 cut(s)	489, 513, 1047, 1242
BseNI	ACTGG	3 cut(s)	137, 198, 268
BseRI	GAGGAG	3 cut(s)	515, 822, 877
BseSI	GKGCMC	1 cut(s)	857
BshFI	GGCC	3 cut(s)	297, 622, 675
BshVI	ATCGAT	2 cut(s)	579, 1118
BsiHKAI	GWGCWC	3 cut(s)	205, 363, 544
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	95, 826
BslI	CCNNNNNNNGG	2 cut(s)	176, 618
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	95, 826
BsnI	GGCC	3 cut(s)	297, 622, 675
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	205, 363, 544, 857
Bsp143I	GATC	3 cut(s)	766, 1134, 1267
Bsp19I	CCATGG	2 cut(s)	70, 612
BspACI	CCGC	4 cut(s)	414, 554, 1181, 1281
BspANI	GGCC	3 cut(s)	297, 622, 675
BspCNI	CTCAG	4 cut(s)	490, 514, 1048, 1243
BspDI	ATCGAT	2 cut(s)	579, 1118
BspHI	TCATGA	3 cut(s)	400, 894, 1131
BspLI	GGNNCC	3 cut(s)	83, 286, 298
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	2 cut(s)	502, 1079
BspPI	GGATC	1 cut(s)	761
BspQI	GCTCTTC	2 cut(s)	210, 315
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	3 cut(s)	137, 198, 268
BssECI	CCNNGG	3 cut(s)	70, 612, 1245
BssMI	GATC	3 cut(s)	766, 1134, 1267
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	3 cut(s)	70, 612, 1245
Bst2UI	CCWGG	1 cut(s)	1125
Bst4CI	ACNGT	3 cut(s)	475, 1033, 1290
Bst6I	CTCTTC	4 cut(s)	93, 210, 315, 966
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	348, 927
BstDEI	CTNAG	6 cut(s)	435, 443, 498, 522, 1056, 1251
BstDSI	CCRYGG	2 cut(s)	70, 612
BstF5I	GGATG	6 cut(s)	66, 398, 576, 608, 818, 1216
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	3 cut(s)	769, 1137, 1270
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	766, 1134, 1267
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 413, 518, 614, 725, 734
BstNI	CCWGG	1 cut(s)	1125
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	1 cut(s)	1123
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	857
BstV2I	GAAGAC	1 cut(s)	1101
Bsu15I	ATCGAT	2 cut(s)	579, 1118
BsuRI	GGCC	3 cut(s)	297, 622, 675
BsuTUI	ATCGAT	2 cut(s)	579, 1118
BtgI	CCRYGG	2 cut(s)	70, 612
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	6 cut(s)	66, 398, 576, 608, 818, 1216
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	2 cut(s)	502, 1079
Cac8I	GCNNGC	2 cut(s)	348, 927
CciI	TCATGA	3 cut(s)	400, 894, 1131
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	6 cut(s)	82, 223, 285, 296, 620, 1052
ClaI	ATCGAT	2 cut(s)	579, 1118
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	3 cut(s)	247, 471, 886
CviAII	CATG	9 cut(s)	71, 161, 401, 613, 677, 895, 961, 1022, 1132
CviQI	GTAC	3 cut(s)	247, 471, 886
DdeI	CTNAG	6 cut(s)	435, 443, 498, 522, 1056, 1251
DpnI	GATC	3 cut(s)	768, 1136, 1269
DpnII	GATC	3 cut(s)	766, 1134, 1267
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	4 cut(s)	93, 210, 315, 966
EarI	CTCTTC	4 cut(s)	93, 210, 315, 966
Eco130I	CCWWGG	3 cut(s)	70, 612, 1245
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	4 cut(s)	82, 223, 285, 1052
Eco57I	CTGAAG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	1015
EcoRII	CCWGG	1 cut(s)	1123
EcoT14I	CCWWGG	3 cut(s)	70, 612, 1245
ErhI	CCWWGG	3 cut(s)	70, 612, 1245
FaeI	CATG	9 cut(s)	74, 164, 404, 616, 680, 898, 964, 1025, 1135
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	2 cut(s)	95, 826
FatI	CATG	9 cut(s)	70, 160, 400, 612, 676, 894, 960, 1021, 1131
FokI	GGATG	6 cut(s)	53, 405, 583, 595, 805, 1223
FspBI	CTAG	2 cut(s)	32, 425
GlaI	GCGC	1 cut(s)	430
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	297, 622, 675
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	9 cut(s)	74, 164, 404, 616, 680, 898, 964, 1025, 1135
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	2 cut(s)	449, 958
HindII	GTYRAC	2 cut(s)	449, 958
HindIII	AAGCTT	1 cut(s)	1009
HinfI	GANTC	6 cut(s)	103, 180, 865, 1115, 1120, 1128
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	5 cut(s)	560, 677, 1103, 1170, 1262
Hpy166II	GTNNAC	3 cut(s)	449, 958, 1174
Hpy188I	TCNGA	2 cut(s)	179, 1145
Hpy188III	TCNNGA	8 cut(s)	80, 401, 756, 895, 1055, 1112, 1132, 1202
Hpy8I	GTNNAC	3 cut(s)	449, 958, 1174
Hpy99I	CGWCG	1 cut(s)	1226
HpyAV	CCTTC	6 cut(s)	144, 662, 872, 914, 1060, 1226
HpyCH4III	ACNGT	3 cut(s)	475, 1033, 1290
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	9 cut(s)	340, 388, 574, 683, 728, 742, 818, 937, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 413, 518, 614, 725, 734
HpyF3I	CTNAG	6 cut(s)	435, 443, 498, 522, 1056, 1251
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	9 cut(s)	74, 164, 404, 616, 680, 898, 964, 1025, 1135
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	766, 1134, 1267
LguI	GCTCTTC	2 cut(s)	210, 315
LmnI	GCTCC	3 cut(s)	358, 515, 691
LweI	GCATC	7 cut(s)	243, 394, 561, 612, 617, 827, 1149
MaeI	CTAG	2 cut(s)	32, 425
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	3 cut(s)	768, 1136, 1269
MboI	GATC	3 cut(s)	766, 1134, 1267
MboII	GAAGA	6 cut(s)	45, 110, 197, 302, 983, 1106
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	4 cut(s)	205, 363, 544, 857
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	7 cut(s)	22, 252, 279, 729, 828, 845, 1015
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	874
MmeI	TCCRAC	2 cut(s)	201, 1015
Mox20I	TGGCCA	1 cut(s)	675
MroXI	GAANNNNTTC	3 cut(s)	102, 975, 1119
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	1 cut(s)	999
MslI	CAYNNNNRTG	2 cut(s)	393, 416
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	521, 932
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	1125
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	1125
MwoI	GCNNNNNNNGC	6 cut(s)	314, 413, 518, 614, 725, 734
NcoI	CCATGG	2 cut(s)	70, 612
NdeII	GATC	3 cut(s)	766, 1134, 1267
NlaIII	CATG	9 cut(s)	74, 164, 404, 616, 680, 898, 964, 1025, 1135
NlaIV	GGNNCC	3 cut(s)	83, 286, 298
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	1025
OliI	CACNNNNGTG	1 cut(s)	393
PagI	TCATGA	3 cut(s)	400, 894, 1131
PaqCI	CACCTGC	1 cut(s)	1079
PciSI	GCTCTTC	2 cut(s)	210, 315
PdmI	GAANNNNTTC	3 cut(s)	102, 975, 1119
PfeI	GAWTC	5 cut(s)	103, 180, 1115, 1120, 1128
PfoI	TCCNGGA	1 cut(s)	1123
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	1123
PspGI	CCWGG	1 cut(s)	1123
PspN4I	GGNNCC	3 cut(s)	83, 286, 298
PspPI	GGNCC	6 cut(s)	82, 223, 285, 296, 620, 1052
PstI	CTGCAG	1 cut(s)	685
PvuII	CAGCTG	2 cut(s)	521, 932
RsaI	GTAC	3 cut(s)	248, 472, 887
RsaNI	GTAC	3 cut(s)	247, 471, 886
RseI	CAYNNNNRTG	2 cut(s)	393, 416
SapI	GCTCTTC	2 cut(s)	210, 315
SaqAI	TTAA	1 cut(s)	999
Sau3AI	GATC	3 cut(s)	766, 1134, 1267
Sau96I	GGNCC	6 cut(s)	82, 223, 285, 296, 620, 1052
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	1125
SduI	GDGCHC	4 cut(s)	205, 363, 544, 857
SfaNI	GCATC	7 cut(s)	243, 394, 561, 612, 617, 827, 1149
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	4 cut(s)	82, 223, 285, 1052
SmiMI	CAYNNNNRTG	2 cut(s)	393, 416
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
Sse9I	AATT	7 cut(s)	22, 252, 279, 729, 828, 845, 1015
SsiI	CCGC	4 cut(s)	414, 554, 1181, 1281
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	2 cut(s)	32, 425
StyD4I	CCNGG	1 cut(s)	1123
StyI	CCWWGG	3 cut(s)	70, 612, 1245
TaaI	ACNGT	3 cut(s)	475, 1033, 1290
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	14, 579, 805, 1118
TasI	AATT	7 cut(s)	22, 252, 279, 729, 828, 845, 1015
TfiI	GAWTC	5 cut(s)	103, 180, 1115, 1120, 1128
Tru1I	TTAA	1 cut(s)	999
Tru9I	TTAA	1 cut(s)	999
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	3 cut(s)	17, 177, 977
TspGWI	ACGGA	4 cut(s)	108, 405, 466, 890
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	4 cut(s)	82, 223, 285, 1052
XapI	RAATTY	2 cut(s)	845, 1015
XceI	RCATGY	1 cut(s)	1025
XmnI	GAANNNNTTC	3 cut(s)	102, 975, 1119
XspI	CTAG	2 cut(s)	32, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.