FvH4_7g34130
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018090
Physical Location & Seq
Forward (+)
24096373 .. 24097764
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34130.t1

Sequence Viewer

Length: 1215 bp
ATGGGGAGATCAGCATGTTGTGATGAAAGTGGGTTAAAGAAAGGGCCGTGGACAACAGAAGAAGATGAAAAGCTGGTGGAGTACATGGAGAGGTGCGGCGGCGACGGGAGTCATCATCATCATCATCATCATCATCGTGGCGGAATTAGTTGGAGACAAGTGCCGAAGCTTGCTGGTTTGAAGCGGTGTGGAAAGAGCTGCAGGCTACGATGGACAAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGGAAACCATTATCAATCTCCATAAACTTCTCGGAAACAAATGGTCCGCTATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATGTAAAGAAGAAGCTGCTCCAAATGGGAATCGACCCCGTCACCCACACTCCACTACTTACTACAACTCATGATCATCTCTCCACCATAGCTGCTGCTAGTACTAGCTTCAATCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATTCAAGTGTTGCAAAATAATATACGACAAGGGCAAGGACTTCTAATTAGCAACAAAACAGCTTCTGATGCATATGATCAGTGTCGTCCATGTATGCCAGGTATGGAGATGGAGGCTGCTGCCGTTGATTATTATAAACATGTTTTAGGGTCAGCACCATCCAGCAGCAGCTCATTTCTGGACCAGCAGCCAGTATATCATCCTGGGCATGGAATTGGATATGATTATGCTGATCTAACTAGTGCAACCATGGTAAATCGTCAATCTAATGGTTTCGAAGGTACTTCTTTCAGAAATACTAACGAGTATGATCATCACTACTCCAAGTTTTCGATTCCAAATAGGAAAGCTCCTTCCAGTACTGAAGATGAACATAAGCTGCAGTACGGGCATGGTCAGAGTGGTACTTATGATCATCAATTGCCTGTGTTGGTTCCAGCAGCCACCTCGCCCTACGCCACCGGTAGTACTCATGATACTACCGCTATTACGCCACCAGAACTCATGATGCATCATTTTCCTAACAGTATCCATTCATCCACAACTACTACTTCAACAGCCACTTTCCAAATTGATTATGGAGTAGCCTGCGACGGCCGGGATCTTATAGTTATGGATGGTGATCATCATCAGGAAGCAACTAATGATCAGTCTTACTGGAAACACATCATGGACTTGGCATCTTGGTAG

Protein Analysis

405

Amino Acids

45.27

Weight (kDa)

6.48

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 75 2.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 90 1.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 81 - 125 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 84 - 129 3.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g34130
rosa_chinensis RchiOBHm_Chr1g0384441
rosa_laevigata RLG00000026040
rosa_multiflora Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii Rroxscaffold_4G00276700
rosa_rugosa Rorug01G0447700
rosa_samantha Rh1BG430900 Rh1CG444100
rosa_wichuraiana Rw1G039960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 660
AciI CCGC 6 cut(s) 96, 99, 141, 184, 312, 1008
AclWI GGATC 1 cut(s) 1134
AcoI YGGCCR 1 cut(s) 1120
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 8 cut(s) 83, 475, 512, 808, 886, 911, 931, 994
AfiI CCNNNNNNNGG 2 cut(s) 265, 734
AflIII ACRYGT 1 cut(s) 664
AgeI ACCGGT 1 cut(s) 986
AgsI TTSAA 5 cut(s) 181, 484, 517, 530, 1080
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 2 cut(s) 622, 727
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 1134
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 3 cut(s) 44, 227, 1120
ApoI RAATTY 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 986
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 44, 309, 706
AsuC2I CCSGG 2 cut(s) 333, 1124
AsuHPI GGTGA 2 cut(s) 406, 1157
AsuII TTCGAA 1 cut(s) 801
AvaII GGWCC 2 cut(s) 309, 706
BccI CCATC 4 cut(s) 204, 628, 691, 1136
BceAI ACGGC 3 cut(s) 31, 632, 1135
BcgI CGANNNNNNTGC 2 cut(s) 954, 988
BciT130I CCWGG 2 cut(s) 624, 729
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 6 cut(s) 445, 601, 835, 937, 1147, 1171
BcnI CCSGG 2 cut(s) 333, 1124
BcoDI GTCTC 1 cut(s) 148
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 3 cut(s) 471, 477, 765
BfmI CTRYAG 3 cut(s) 199, 315, 905
BfoI RGCGCY 1 cut(s) 503
BfuI GTATCC 1 cut(s) 1064
BmcAI AGTACT 4 cut(s) 475, 512, 886, 994
Bme1390I CCNGG 4 cut(s) 333, 624, 729, 1124
Bme18I GGWCC 2 cut(s) 309, 706
BmgT120I GGNCC 3 cut(s) 44, 309, 706
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 4 cut(s) 333, 624, 729, 1124
BmsI GCATC 3 cut(s) 583, 1023, 1045
BoxI GACNNNNGTC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 333, 1124
BsaBI GATNNNNATC 2 cut(s) 1146, 1152
BsaJI CCNNGG 3 cut(s) 47, 728, 774
BsaWI WCCGGW 1 cut(s) 986
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 734
Bse118I RCCGGY 1 cut(s) 986
Bse1I ACTGG 4 cut(s) 508, 716, 882, 1187
Bse8I GATNNNNATC 2 cut(s) 1146, 1152
BseBI CCWGG 2 cut(s) 624, 729
BseDI CCNNGG 3 cut(s) 47, 728, 774
BseGI GGATG 4 cut(s) 683, 724, 1061, 1147
BseJI GATNNNNATC 2 cut(s) 1146, 1152
BseLI CCNNNNNNNGG 2 cut(s) 265, 734
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 4 cut(s) 508, 716, 882, 1187
BseRI GAGGAG 1 cut(s) 494
BseX3I CGGCCG 1 cut(s) 1120
Bsh1285I CGRYCG 1 cut(s) 1123
BshFI GGCC 3 cut(s) 46, 229, 1122
BshTI ACCGGT 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 1123
BsiSI CCGG 3 cut(s) 332, 987, 1123
BslI CCNNNNNNNGG 2 cut(s) 265, 734
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 3 cut(s) 46, 229, 1122
Bsp119I TTCGAA 1 cut(s) 801
Bsp143I GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 6 cut(s) 96, 99, 141, 184, 312, 1008
BspANI GGCC 3 cut(s) 46, 229, 1122
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 3 cut(s) 442, 997, 1029
BspLI GGNNCC 1 cut(s) 960
BspMAI CTGCAG 2 cut(s) 203, 909
BspPI GGATC 1 cut(s) 1134
BspT104I TTCGAA 1 cut(s) 801
BsrFI RCCGGY 1 cut(s) 986
BsrI ACTGG 4 cut(s) 508, 716, 882, 1187
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 3 cut(s) 47, 728, 774
BssMI GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 2 cut(s) 624, 729
Bst4CI ACNGT 1 cut(s) 1052
Bst6I CTCTTC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 4 cut(s) 171, 203, 322, 1114
BstDEI CTNAG 1 cut(s) 224
BstDSI CCRYGG 2 cut(s) 47, 774
BstF5I GGATG 4 cut(s) 683, 724, 1061, 1147
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 9 cut(s) 11, 448, 604, 760, 838, 940, 1129, 1150, 1174
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
BstMCI CGRYCG 1 cut(s) 1123
BstMWI GCNNNNNNNGC 2 cut(s) 593, 913
BstNI CCWGG 2 cut(s) 624, 729
BstNSI RCATGY 2 cut(s) 18, 668
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 4 cut(s) 331, 622, 727, 1122
BstSFI CTRYAG 3 cut(s) 199, 315, 905
BstX2I RGATCY 1 cut(s) 1126
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 1 cut(s) 1126
BstZI CGGCCG 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 3 cut(s) 46, 229, 1122
BtgI CCRYGG 2 cut(s) 47, 774
BtsCI GGATG 4 cut(s) 683, 724, 1061, 1147
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 4 cut(s) 171, 203, 322, 1114
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 3 cut(s) 442, 997, 1029
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 986
Cfr13I GGNCC 3 cut(s) 44, 309, 706
Csp6I GTAC 8 cut(s) 82, 474, 511, 807, 885, 910, 930, 993
CspAI ACCGGT 1 cut(s) 986
CviQI GTAC 8 cut(s) 82, 474, 511, 807, 885, 910, 930, 993
DdeI CTNAG 1 cut(s) 224
DpnI GATC 9 cut(s) 10, 447, 603, 759, 837, 939, 1128, 1149, 1173
DpnII GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
EaeI YGGCCR 1 cut(s) 1120
EagI CGGCCG 1 cut(s) 1120
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 1 cut(s) 156
EclXI CGGCCG 1 cut(s) 1120
Eco130I CCWWGG 1 cut(s) 774
Eco147I AGGCCT 1 cut(s) 229
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 309, 706
Eco52I CGGCCG 1 cut(s) 1120
Eco57I CTGAAG 1 cut(s) 909
EcoRII CCWGG 2 cut(s) 622, 727
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 774
EcoT22I ATGCAT 2 cut(s) 598, 1038
ErhI CCWWGG 1 cut(s) 774
FauNDI CATATG 1 cut(s) 598
FbaI TGATCA 6 cut(s) 445, 601, 835, 937, 1147, 1171
FokI GGATG 4 cut(s) 670, 711, 1048, 1154
FspBI CTAG 3 cut(s) 471, 477, 765
GlaI GCGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 46, 229, 1122
HapII CCGG 3 cut(s) 332, 987, 1123
HhaI GCGC 1 cut(s) 502
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 109, 402, 859
HpaII CCGG 3 cut(s) 332, 987, 1123
HphI GGTGA 2 cut(s) 406, 1157
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 5 cut(s) 225, 299, 592, 818, 924
Hpy188III TCNNGA 8 cut(s) 238, 355, 364, 443, 704, 998, 1030, 1157
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 2 cut(s) 107, 1121
HpyAV CCTTC 4 cut(s) 330, 338, 797, 888
HpyCH4III ACNGT 1 cut(s) 1052
HpyCH4V TGCA 6 cut(s) 201, 538, 596, 770, 907, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 913
HpyF3I CTNAG 1 cut(s) 224
HspAI GCGC 1 cut(s) 500
Ksp22I TGATCA 6 cut(s) 445, 601, 835, 937, 1147, 1171
Kzo9I GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
LmnI GCTCC 3 cut(s) 396, 507, 880
LweI GCATC 3 cut(s) 583, 1023, 1045
MaeI CTAG 3 cut(s) 471, 477, 765
MaeIII GTNAC 1 cut(s) 412
MalI GATC 9 cut(s) 10, 447, 603, 759, 837, 939, 1128, 1149, 1173
MboI GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
MboII GAAGA 5 cut(s) 71, 74, 275, 394, 902
MfeI CAATTG 1 cut(s) 944
MflI RGATCY 1 cut(s) 1126
MluCI AATT 6 cut(s) 144, 525, 570, 738, 944, 1095
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 7 cut(s) 84, 219, 234, 259, 515, 631, 982
Mph1103I ATGCAT 2 cut(s) 598, 1038
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 3 cut(s) 332, 987, 1123
MspR9I CCNGG 4 cut(s) 333, 624, 729, 1124
MunI CAATTG 1 cut(s) 944
MvaI CCWGG 2 cut(s) 624, 729
MwoI GCNNNNNNNGC 2 cut(s) 593, 913
NciI CCSGG 2 cut(s) 333, 1124
NcoI CCATGG 1 cut(s) 774
NdeI CATATG 1 cut(s) 598
NdeII GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
NlaIV GGNNCC 1 cut(s) 960
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 2 cut(s) 598, 1038
NspI RCATGY 2 cut(s) 18, 668
NspV TTCGAA 1 cut(s) 801
PagI TCATGA 3 cut(s) 442, 997, 1029
PceI AGGCCT 1 cut(s) 229
PciI ACATGT 1 cut(s) 664
PfeI GAWTC 2 cut(s) 402, 859
PflFI GACNNNGTC 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 986
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 108
PsiI TTATAA 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 622, 727
PspGI CCWGG 2 cut(s) 622, 727
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 3 cut(s) 44, 309, 706
PstI CTGCAG 2 cut(s) 203, 909
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 1126
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 8 cut(s) 83, 475, 512, 808, 886, 911, 931, 994
RsaNI GTAC 8 cut(s) 82, 474, 511, 807, 885, 910, 930, 993
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 9 cut(s) 8, 445, 601, 757, 835, 937, 1126, 1147, 1171
Sau96I GGNCC 3 cut(s) 44, 309, 706
ScaI AGTACT 4 cut(s) 475, 512, 886, 994
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 4 cut(s) 333, 624, 729, 1124
SfaNI GCATC 3 cut(s) 583, 1023, 1045
SfcI CTRYAG 3 cut(s) 199, 315, 905
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 2 cut(s) 309, 706
SmiMI CAYNNNNRTG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 6 cut(s) 144, 525, 570, 738, 944, 1095
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 6 cut(s) 96, 99, 141, 184, 312, 1008
SspMI CTAG 3 cut(s) 471, 477, 765
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 4 cut(s) 331, 622, 727, 1122
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 1 cut(s) 1052
TaqI TCGA 3 cut(s) 405, 801, 857
TasI AATT 6 cut(s) 144, 525, 570, 738, 944, 1095
TatI WGTACW 5 cut(s) 81, 473, 510, 884, 992
TauI GCSGC 2 cut(s) 99, 102
TfiI GAWTC 2 cut(s) 402, 859
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 39, 81, 909, 1050
TspRI CASTG 1 cut(s) 611
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 2 cut(s) 309, 706
XapI RAATTY 1 cut(s) 525
XceI RCATGY 2 cut(s) 18, 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XspI CTAG 3 cut(s) 471, 477, 765
ZrmI AGTACT 4 cut(s) 475, 512, 886, 994
Zsp2I ATGCAT 2 cut(s) 598, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.