transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g34130 |
| rosa_chinensis | RchiOBHm_Chr1g0384441 |
| rosa_laevigata | RLG00000026040 |
| rosa_multiflora | Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015 |
| rosa_roxburghii | Rroxscaffold_4G00276700 |
| rosa_rugosa | Rorug01G0447700 |
| rosa_samantha | Rh1BG430900 Rh1CG444100 |
| rosa_wichuraiana | Rw1G039960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 181, 201 |
| AccI | GTMKAC | 1 cut(s) | 531 |
| AciI | CCGC | 1 cut(s) | 312 |
| AcsI | RAATTY | 3 cut(s) | 140, 357, 695 |
| AcuI | CTGAAG | 2 cut(s) | 246, 708 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 284 |
| AgsI | TTSAA | 5 cut(s) | 15, 362, 409, 677, 701 |
| AjnI | CCWGG | 1 cut(s) | 371 |
| AluBI | AGCT | 5 cut(s) | 71, 430, 619, 643, 692 |
| AluI | AGCT | 5 cut(s) | 71, 430, 619, 643, 692 |
| Alw21I | GWGCWC | 1 cut(s) | 645 |
| Alw26I | GTCTC | 2 cut(s) | 302, 387 |
| ApeKI | GCWGC | 7 cut(s) | 68, 234, 271, 274, 344, 430, 541 |
| ApoI | RAATTY | 3 cut(s) | 140, 357, 695 |
| AspLEI | GCGC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 2 cut(s) | 131, 514 |
| AsuHPI | GGTGA | 3 cut(s) | 153, 414, 664 |
| AvaII | GGWCC | 2 cut(s) | 131, 514 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BauI | CACGAG | 1 cut(s) | 620 |
| Bbv12I | GWGCWC | 1 cut(s) | 645 |
| BbvI | GCAGC | 7 cut(s) | 80, 246, 283, 286, 356, 417, 528 |
| BciT130I | CCWGG | 1 cut(s) | 373 |
| BcoDI | GTCTC | 2 cut(s) | 302, 387 |
| BfmI | CTRYAG | 2 cut(s) | 232, 269 |
| BfuAI | ACCTGC | 2 cut(s) | 181, 201 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 119 |
| BisI | GCNGC | 7 cut(s) | 69, 235, 272, 275, 345, 431, 542 |
| BlsI | GCNGC | 7 cut(s) | 70, 236, 273, 276, 346, 432, 543 |
| Bme1390I | CCNGG | 1 cut(s) | 373 |
| Bme18I | GGWCC | 2 cut(s) | 131, 514 |
| BmgT120I | GGNCC | 2 cut(s) | 131, 514 |
| BmrFI | CCNGG | 1 cut(s) | 373 |
| BmsI | GCATC | 2 cut(s) | 211, 310 |
| Bpu10I | CCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 629 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 1 cut(s) | 114 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 371, 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 284 |
| Bse1I | ACTGG | 1 cut(s) | 539 |
| Bse3DI | GCAATG | 1 cut(s) | 576 |
| BseBI | CCWGG | 1 cut(s) | 373 |
| BseDI | CCNNGG | 1 cut(s) | 114 |
| BseGI | GGATG | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 284 |
| BseMI | GCAATG | 1 cut(s) | 576 |
| BseMII | CTCAG | 3 cut(s) | 179, 417, 594 |
| BseNI | ACTGG | 1 cut(s) | 539 |
| BseXI | GCAGC | 7 cut(s) | 80, 246, 283, 286, 356, 417, 528 |
| BsgI | GTGCAG | 1 cut(s) | 416 |
| BsiHKAI | GWGCWC | 1 cut(s) | 645 |
| BslFI | GGGAC | 1 cut(s) | 431 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 284 |
| BsmAI | GTCTC | 2 cut(s) | 302, 387 |
| BsmFI | GGGAC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| Bsp1286I | GDGCHC | 1 cut(s) | 645 |
| BspACI | CCGC | 1 cut(s) | 312 |
| BspCNI | CTCAG | 3 cut(s) | 178, 418, 595 |
| BspMAI | CTGCAG | 2 cut(s) | 236, 273 |
| BspMI | ACCTGC | 2 cut(s) | 181, 201 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 576 |
| BsrI | ACTGG | 1 cut(s) | 539 |
| BssECI | CCNNGG | 1 cut(s) | 114 |
| BssNAI | GTATAC | 1 cut(s) | 532 |
| BssSI | CACGAG | 1 cut(s) | 620 |
| BssT1I | CCWWGG | 1 cut(s) | 114 |
| Bst1107I | GTATAC | 1 cut(s) | 532 |
| Bst2BI | CACGAG | 1 cut(s) | 620 |
| Bst2UI | CCWGG | 1 cut(s) | 373 |
| Bst4CI | ACNGT | 2 cut(s) | 83, 328 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 3 cut(s) | 66, 232, 546 |
| BstDEI | CTNAG | 3 cut(s) | 165, 426, 603 |
| BstF5I | GGATG | 1 cut(s) | 30 |
| BstHHI | GCGC | 1 cut(s) | 507 |
| BstMAI | GTCTC | 2 cut(s) | 302, 387 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 119, 320 |
| BstNI | CCWGG | 1 cut(s) | 373 |
| BstSCI | CCNGG | 1 cut(s) | 371 |
| BstSFI | CTRYAG | 2 cut(s) | 232, 269 |
| BstV1I | GCAGC | 7 cut(s) | 80, 246, 283, 286, 356, 417, 528 |
| BstZ17I | GTATAC | 1 cut(s) | 532 |
| BtsCI | GGATG | 1 cut(s) | 30 |
| BtsI | GCAGTG | 2 cut(s) | 266, 673 |
| BtsIMutI | CAGTG | 3 cut(s) | 266, 435, 673 |
| BveI | ACCTGC | 2 cut(s) | 181, 201 |
| Cac8I | GCNNGC | 3 cut(s) | 66, 232, 546 |
| CfoI | GCGC | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 2 cut(s) | 131, 514 |
| CseI | GACGC | 1 cut(s) | 547 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviAII | CATG | 1 cut(s) | 563 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 3 cut(s) | 165, 426, 603 |
| DraI | TTTAAA | 1 cut(s) | 339 |
| Ecl136II | GAGCTC | 1 cut(s) | 643 |
| Eco130I | CCWWGG | 1 cut(s) | 114 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco47I | GGWCC | 2 cut(s) | 131, 514 |
| Eco53kI | GAGCTC | 1 cut(s) | 643 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 708 |
| EcoICRI | GAGCTC | 1 cut(s) | 643 |
| EcoRII | CCWGG | 1 cut(s) | 371 |
| EcoT14I | CCWWGG | 1 cut(s) | 114 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 1 cut(s) | 114 |
| FaeI | CATG | 1 cut(s) | 566 |
| FaiI | YATR | 7 cut(s) | 44, 239, 367, 532, 564, 597, 638 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 83, 115, 389, 421 |
| FaqI | GGGAC | 1 cut(s) | 431 |
| FatI | CATG | 1 cut(s) | 562 |
| FblI | GTMKAC | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 7 cut(s) | 69, 235, 272, 275, 345, 431, 542 |
| FokI | GGATG | 1 cut(s) | 17 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 7 cut(s) | 69, 235, 272, 275, 345, 431, 542 |
| GlaI | GCGC | 1 cut(s) | 506 |
| GluI | GCNGC | 7 cut(s) | 69, 235, 272, 275, 345, 431, 542 |
| HgaI | GACGC | 1 cut(s) | 547 |
| HhaI | GCGC | 1 cut(s) | 507 |
| Hin1II | CATG | 1 cut(s) | 566 |
| Hin6I | GCGC | 1 cut(s) | 505 |
| HinP1I | GCGC | 1 cut(s) | 505 |
| HincII | GTYRAC | 1 cut(s) | 97 |
| HindII | GTYRAC | 1 cut(s) | 97 |
| HinfI | GANTC | 3 cut(s) | 380, 419, 470 |
| HphI | GGTGA | 3 cut(s) | 153, 414, 664 |
| Hpy166II | GTNNAC | 3 cut(s) | 97, 532, 582 |
| Hpy188I | TCNGA | 3 cut(s) | 168, 307, 469 |
| Hpy8I | GTNNAC | 3 cut(s) | 97, 532, 582 |
| HpyCH4III | ACNGT | 2 cut(s) | 83, 328 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 6 cut(s) | 176, 196, 234, 271, 323, 433 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 119, 320 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 426, 603 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 1 cut(s) | 566 |
| HspAI | GCGC | 1 cut(s) | 505 |
| LmnI | GCTCC | 2 cut(s) | 566, 640 |
| Lsp1109I | GCAGC | 7 cut(s) | 80, 246, 283, 286, 356, 417, 528 |
| LweI | GCATC | 2 cut(s) | 211, 310 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 2 cut(s) | 293, 387 |
| MboII | GAAGA | 1 cut(s) | 409 |
| MhlI | GDGCHC | 1 cut(s) | 645 |
| MlyI | GAGTC | 2 cut(s) | 389, 413 |
| MmeI | TCCRAC | 1 cut(s) | 357 |
| MnlI | CCTC | 7 cut(s) | 70, 112, 174, 192, 238, 499, 643 |
| MseI | TTAA | 4 cut(s) | 281, 338, 455, 524 |
| MspR9I | CCNGG | 1 cut(s) | 373 |
| MvaI | CCWGG | 1 cut(s) | 373 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 119, 320 |
| NlaIII | CATG | 1 cut(s) | 566 |
| PfeI | GAWTC | 1 cut(s) | 470 |
| PkrI | GCNGC | 7 cut(s) | 70, 236, 273, 276, 346, 432, 543 |
| PleI | GAGTC | 2 cut(s) | 388, 413 |
| PpsI | GAGTC | 2 cut(s) | 388, 413 |
| Psp124BI | GAGCTC | 1 cut(s) | 645 |
| Psp6I | CCWGG | 1 cut(s) | 371 |
| PspGI | CCWGG | 1 cut(s) | 371 |
| PspPI | GGNCC | 2 cut(s) | 131, 514 |
| PstI | CTGCAG | 2 cut(s) | 236, 273 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| SacI | GAGCTC | 1 cut(s) | 645 |
| SaqAI | TTAA | 4 cut(s) | 281, 338, 455, 524 |
| SatI | GCNGC | 7 cut(s) | 69, 235, 272, 275, 345, 431, 542 |
| Sau96I | GGNCC | 2 cut(s) | 131, 514 |
| SchI | GAGTC | 2 cut(s) | 389, 413 |
| ScrFI | CCNGG | 1 cut(s) | 373 |
| SduI | GDGCHC | 1 cut(s) | 645 |
| SfaNI | GCATC | 2 cut(s) | 211, 310 |
| SfcI | CTRYAG | 2 cut(s) | 232, 269 |
| SinI | GGWCC | 2 cut(s) | 131, 514 |
| SmlI | CTYRAG | 1 cut(s) | 644 |
| SmoI | CTYRAG | 1 cut(s) | 644 |
| SsiI | CCGC | 1 cut(s) | 312 |
| SstI | GAGCTC | 1 cut(s) | 645 |
| StyD4I | CCNGG | 1 cut(s) | 371 |
| StyI | CCWWGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 2 cut(s) | 83, 328 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 1 cut(s) | 447 |
| TfiI | GAWTC | 1 cut(s) | 470 |
| Tru1I | TTAA | 4 cut(s) | 281, 338, 455, 524 |
| Tru9I | TTAA | 4 cut(s) | 281, 338, 455, 524 |
| TscAI | CASTG | 3 cut(s) | 273, 442, 673 |
| TseI | GCWGC | 7 cut(s) | 68, 234, 271, 274, 344, 430, 541 |
| TspDTI | ATGAA | 4 cut(s) | 19, 291, 546, 551 |
| TspRI | CASTG | 3 cut(s) | 273, 442, 673 |
| VpaK11BI | GGWCC | 2 cut(s) | 131, 514 |
| XapI | RAATTY | 3 cut(s) | 140, 357, 695 |
| XmiI | GTMKAC | 1 cut(s) | 531 |