Rw1G039960
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0018090
Physical Location & Seq
Reverse (-)
67446344 .. 67449002
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039960.1

Sequence Viewer

Length: 1200 bp
ATGGGAAGATCAGCATGTTGTGATGAAAATGGATTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGAGTATATGGAGAGGTGCGGTGGCGATGGGAATCATCATCGCGGCGGAATCAGTTGGAGACAAGTGCCAAAGCTTGCAGGTTTGAAGAGGTGTGGAAAGAGCTGCAGGCTACGATGGACCAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGCAAACCATCATCAATCTCCATAAACTGCTCGGAAACAAATGGTCCGAGATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAACTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATCATCTCTCCGCCATAGCTGCTAGTACTAGCTTCAGTCCATGCGATTGGGCGCTCCTCCAGTACCTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAAGGGCAAGGACTTCTAATTAGCAACAACGCTGGTCCTAATGCATATGATCAGTATCGTTCATGTGTGCTAGGGATGGATATGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGGTCATCACCATCCAGAAGCTGCTCAGTTCCGGACCAACAGCTACTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAACTAGTGCAACCATGATGAATCGTCATTCTAGTTGTCTCCAAGGTACTTCTTTCGGGACTAGTGAGTATGATCATCATGATTCCAAGTTTGCCATTCCAAATATGAAAGTTCCATTTAGTACTGATGATCATCATCATAAGCTGCAGTATGGTGAGAGTGGTCATCATGATCATCAATTGCCTGTTTTGGTTTCAGCAGCCACCTCGGCCTACGTCACTATCACTCATGATACTACTGCTGCTAATGATCAATTTGCTACCCCAAATATTCCTCATCAGTTTTCTAACAGTACCCATTCATCCACAACTACTACTACTACTAGTACTACTTCTTCAACGGCCACCTTTGAAATTGATCATGAAGTAGCTTGCGCCGGCCGGGATCTTATAGTTATGGATGATTATCATCAGGAAGCAACTAATAATGATCAGTCTTATTGGAAACACATCATGGAGTGA

Protein Analysis

399

Amino Acids

44.6

Weight (kDa)

6.15

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 69 7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 84 2.4e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 120 2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 123 4.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g34130
rosa_chinensis RchiOBHm_Chr1g0384441
rosa_laevigata RLG00000026040
rosa_multiflora Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii Rroxscaffold_4G00276700
rosa_rugosa Rorug01G0447700
rosa_samantha Rh1BG430900 Rh1CG444100
rosa_wichuraiana Rw1G039960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 146
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 4 cut(s) 96, 120, 123, 435
AclWI GGATC 1 cut(s) 1131
AcoI YGGCCR 2 cut(s) 1080, 1117
AcuI CTGAAG 1 cut(s) 442
AfaI GTAC 6 cut(s) 451, 488, 787, 862, 1033, 1066
AgsI TTSAA 3 cut(s) 163, 1077, 1091
AhlI ACTAGT 3 cut(s) 743, 800, 1061
AluBI AGCT 9 cut(s) 73, 151, 180, 443, 456, 672, 694, 883, 1109
AluI AGCT 9 cut(s) 73, 151, 180, 443, 456, 672, 694, 883, 1109
Alw26I GTCTC 2 cut(s) 130, 782
AlwI GGATC 1 cut(s) 1131
AlwNI CAGNNNCTG 2 cut(s) 490, 672
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 5 cut(s) 44, 209, 948, 1080, 1117
ApeKI GCWGC 8 cut(s) 180, 443, 617, 620, 672, 883, 938, 980
AspLEI GCGC 2 cut(s) 478, 1115
AspS9I GGNCC 5 cut(s) 44, 195, 291, 563, 685
AsuC2I CCSGG 2 cut(s) 315, 1121
AsuHPI GGTGA 3 cut(s) 388, 651, 905
AvaII GGWCC 4 cut(s) 195, 291, 563, 685
BarI GAAGNNNNNNTAC 2 cut(s) 1057, 1089
BbvI GCAGC 8 cut(s) 167, 430, 604, 607, 659, 870, 950, 967
BccI CCATC 5 cut(s) 98, 186, 263, 598, 670
BceAI ACGGC 2 cut(s) 31, 1095
BcgI CGANNNNNNTGC 2 cut(s) 927, 961
BclI TGATCA 8 cut(s) 424, 577, 811, 868, 910, 988, 1096, 1168
BcnI CCSGG 2 cut(s) 315, 1121
BcoDI GTCTC 2 cut(s) 130, 782
BcuI ACTAGT 3 cut(s) 743, 800, 1061
BfaI CTAG 7 cut(s) 447, 453, 599, 744, 771, 801, 1062
BfmI CTRYAG 3 cut(s) 181, 621, 884
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 9 cut(s) 121, 181, 444, 618, 621, 673, 884, 939, 981
BlsI GCNGC 9 cut(s) 122, 182, 445, 619, 622, 674, 885, 940, 982
BmcAI AGTACT 3 cut(s) 451, 862, 1066
Bme1390I CCNGG 2 cut(s) 315, 1121
Bme18I GGWCC 4 cut(s) 195, 291, 563, 685
BmgT120I GGNCC 5 cut(s) 44, 195, 291, 563, 685
BmrFI CCNGG 2 cut(s) 315, 1121
BpmI CTGGAG 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 315, 1121
BsaBI GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1143, 1146
BsaJI CCNNGG 3 cut(s) 47, 781, 945
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 1 cut(s) 484
Bse8I GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1143, 1146
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 47, 781, 945
BseGI GGATG 4 cut(s) 609, 662, 1040, 1144
BseJI GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1143, 1146
BseMII CTCAG 2 cut(s) 197, 690
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 1 cut(s) 470
BseX3I CGGCCG 1 cut(s) 1117
BseXI GCAGC 8 cut(s) 167, 430, 604, 607, 659, 870, 950, 967
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 1120
BshFI GGCC 5 cut(s) 46, 211, 950, 1082, 1119
BsiEI CGRYCG 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 314, 683, 1116, 1120
BslFI GGGAC 1 cut(s) 811
BsmAI GTCTC 2 cut(s) 130, 782
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 5 cut(s) 46, 211, 950, 1082, 1119
Bsp13I TCCGGA 1 cut(s) 682
BspACI CCGC 4 cut(s) 96, 120, 123, 435
BspANI GGCC 5 cut(s) 46, 211, 950, 1082, 1119
BspCNI CTCAG 2 cut(s) 198, 689
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 5 cut(s) 421, 817, 907, 967, 1099
BspMAI CTGCAG 3 cut(s) 185, 625, 888
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 1131
BspQI GCTCTTC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 3 cut(s) 47, 781, 945
BssT1I CCWWGG 1 cut(s) 781
Bst4CI ACNGT 1 cut(s) 1031
Bst6I CTCTTC 2 cut(s) 158, 240
BstC8I GCNNGC 5 cut(s) 153, 185, 304, 1111, 1117
BstDEI CTNAG 2 cut(s) 206, 676
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 609, 662, 1040, 1144
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 478, 1115
BstMAI GTCTC 2 cut(s) 130, 782
BstMCI CGRYCG 1 cut(s) 1120
BstMWI GCNNNNNNNGC 2 cut(s) 443, 947
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 313, 1119
BstSFI CTRYAG 3 cut(s) 181, 621, 884
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 8 cut(s) 167, 430, 604, 607, 659, 870, 950, 967
BstX2I RGATCY 1 cut(s) 1123
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 1123
BstZI CGGCCG 1 cut(s) 1117
BsuRI GGCC 5 cut(s) 46, 211, 950, 1082, 1119
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 101, 117
BtsCI GGATG 4 cut(s) 609, 662, 1040, 1144
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 5 cut(s) 153, 185, 304, 1111, 1117
CaiI CAGNNNCTG 2 cut(s) 490, 672
CciI TCATGA 5 cut(s) 421, 817, 907, 967, 1099
CfoI GCGC 2 cut(s) 478, 1115
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 5 cut(s) 44, 195, 291, 563, 685
Csp6I GTAC 6 cut(s) 450, 487, 786, 861, 1032, 1065
CviQI GTAC 6 cut(s) 450, 487, 786, 861, 1032, 1065
DdeI CTNAG 2 cut(s) 206, 676
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 2 cut(s) 1080, 1117
EagI CGGCCG 1 cut(s) 1117
Eam1104I CTCTTC 2 cut(s) 158, 240
EarI CTCTTC 2 cut(s) 158, 240
EciI GGCGGA 2 cut(s) 138, 424
EclXI CGGCCG 1 cut(s) 1117
Eco130I CCWWGG 1 cut(s) 781
Eco147I AGGCCT 1 cut(s) 211
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 4 cut(s) 195, 291, 563, 685
Eco52I CGGCCG 1 cut(s) 1117
Eco57I CTGAAG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 781
FaqI GGGAC 1 cut(s) 811
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 8 cut(s) 424, 577, 811, 868, 910, 988, 1096, 1168
Fnu4HI GCNGC 9 cut(s) 121, 181, 444, 618, 621, 673, 884, 939, 981
FokI GGATG 4 cut(s) 616, 649, 1027, 1151
Fsp4HI GCNGC 9 cut(s) 121, 181, 444, 618, 621, 673, 884, 939, 981
FspBI CTAG 7 cut(s) 447, 453, 599, 744, 771, 801, 1062
GlaI GCGC 2 cut(s) 477, 1114
GluI GCNGC 9 cut(s) 121, 181, 444, 618, 621, 673, 884, 939, 981
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 5 cut(s) 46, 211, 950, 1082, 1119
HapII CCGG 4 cut(s) 314, 683, 1116, 1120
HhaI GCGC 2 cut(s) 478, 1115
Hin6I GCGC 2 cut(s) 476, 1113
HinP1I GCGC 2 cut(s) 476, 1113
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 5 cut(s) 109, 126, 384, 760, 821
HpaII CCGG 4 cut(s) 314, 683, 1116, 1120
HphI GGTGA 3 cut(s) 388, 651, 905
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 3 cut(s) 207, 281, 295
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 312, 320
HpyCH4III ACNGT 1 cut(s) 1031
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 8 cut(s) 155, 183, 416, 514, 572, 623, 749, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 947
HpyF3I CTNAG 2 cut(s) 206, 676
HpySE526I ACGT 1 cut(s) 954
HspAI GCGC 2 cut(s) 476, 1113
Kpn2I TCCGGA 1 cut(s) 682
KroI GCCGGC 1 cut(s) 1115
KroNI GCCGGC 1 cut(s) 1117
Ksp22I TGATCA 8 cut(s) 424, 577, 811, 868, 910, 988, 1096, 1168
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 378, 483
Lsp1109I GCAGC 8 cut(s) 167, 430, 604, 607, 659, 870, 950, 967
MaeI CTAG 7 cut(s) 447, 453, 599, 744, 771, 801, 1062
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 2 cut(s) 394, 955
MboII GAAGA 7 cut(s) 18, 71, 74, 175, 257, 376, 1065
MfeI CAATTG 1 cut(s) 917
MflI RGATCY 1 cut(s) 1123
MluCI AATT 7 cut(s) 408, 546, 628, 640, 917, 992, 1092
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 8 cut(s) 84, 159, 201, 216, 491, 607, 955, 1023
Mph1103I ATGCAT 1 cut(s) 574
MroI TCCGGA 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 1115
MseI TTAA 4 cut(s) 35, 359, 627, 740
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 4 cut(s) 314, 683, 1116, 1120
MspR9I CCNGG 2 cut(s) 315, 1121
MunI CAATTG 1 cut(s) 917
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 443, 947
NaeI GCCGGC 1 cut(s) 1117
NciI CCSGG 2 cut(s) 315, 1121
NdeI CATATG 1 cut(s) 574
NgoMIV GCCGGC 1 cut(s) 1115
NmeAIII GCCGAG 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 394, 955
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 18
PagI TCATGA 5 cut(s) 421, 817, 907, 967, 1099
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 1117
PfeI GAWTC 5 cut(s) 109, 126, 384, 760, 821
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 9 cut(s) 122, 182, 445, 619, 622, 674, 885, 940, 982
PsiI TTATAA 1 cut(s) 636
PspPI GGNCC 5 cut(s) 44, 195, 291, 563, 685
PstI CTGCAG 3 cut(s) 185, 625, 888
PstNI CAGNNNCTG 2 cut(s) 490, 672
PsuI RGATCY 1 cut(s) 1123
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 6 cut(s) 451, 488, 787, 862, 1033, 1066
RsaNI GTAC 6 cut(s) 450, 487, 786, 861, 1032, 1065
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 4 cut(s) 35, 359, 627, 740
SatI GCNGC 9 cut(s) 121, 181, 444, 618, 621, 673, 884, 939, 981
Sau96I GGNCC 5 cut(s) 44, 195, 291, 563, 685
ScaI AGTACT 3 cut(s) 451, 862, 1066
ScrFI CCNGG 2 cut(s) 315, 1121
SfcI CTRYAG 3 cut(s) 181, 621, 884
SinI GGWCC 4 cut(s) 195, 291, 563, 685
SmiMI CAYNNNNRTG 1 cut(s) 711
SpeI ACTAGT 3 cut(s) 743, 800, 1061
Sse9I AATT 7 cut(s) 408, 546, 628, 640, 917, 992, 1092
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 4 cut(s) 96, 120, 123, 435
SspI AATATT 1 cut(s) 1009
SspMI CTAG 7 cut(s) 447, 453, 599, 744, 771, 801, 1062
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 313, 1119
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 1 cut(s) 1031
TaiI ACGT 1 cut(s) 957
TaqI TCGA 1 cut(s) 387
TasI AATT 7 cut(s) 408, 546, 628, 640, 917, 992, 1092
TatI WGTACW 3 cut(s) 449, 860, 1064
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 5 cut(s) 109, 126, 384, 760, 821
Tru1I TTAA 4 cut(s) 35, 359, 627, 740
Tru9I TTAA 4 cut(s) 35, 359, 627, 740
TseFI GTSAC 2 cut(s) 394, 955
TseI GCWGC 8 cut(s) 180, 443, 617, 620, 672, 883, 938, 980
Tsp45I GTSAC 2 cut(s) 394, 955
TspDTI ATGAA 7 cut(s) 39, 81, 579, 773, 860, 1029, 1116
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 195, 291, 563, 685
XceI RCATGY 1 cut(s) 18
XspI CTAG 7 cut(s) 447, 453, 599, 744, 771, 801, 1062
ZrmI AGTACT 3 cut(s) 451, 862, 1066
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.