Rh1BG430900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018090
Physical Location & Seq
Forward (+)
54685647 .. 54690205
4559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG430900.1

Sequence Viewer

Length: 813 bp
ATGGGAAGATCAGCATGTTGTGATGAAAATGGATTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGAGTACATGGAGAGGTGCGGTGGCGATGGGAATCATCATCGCGGCGGAATTAGTTGGAGACAAGTGCCAAAGCTTGCAGGTTTGAAGAGGTGTGGAAAGAGCTGCAGGCTACGATGGACCAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGCAAACCATCATCAATCTCCATAAACTGCTCGGAAACAAATGGTCCGAGATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAACTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATCATCTCTCCGCCATAGCTGCTAGTACTAGCTTCAGTCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAAGGGCAAGGACTTCTAAGTAGCAACAACGCTGGTCCTAATGCATATGATCAGTATCGTTCATGTGTGCTAGGGATGGATATGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGGTCATCACCATCCAGAAGCTGCTCAGTTCCGGACCAACAGCTAGTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAACTAGTGCAACCATGATGAATCGTCATTCTAGTTGTCTCCAAGGGGCAAGTAAAGAGTACACATGGCTTTAA

Protein Analysis

270

Amino Acids

30.3

Weight (kDa)

8.04

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 69 3.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 84 1.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 120 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 123 2.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g34130
rosa_chinensis RchiOBHm_Chr1g0384441
rosa_laevigata RLG00000026040
rosa_multiflora Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii Rroxscaffold_4G00276700
rosa_rugosa Rorug01G0447700
rosa_samantha Rh1BG430900 Rh1CG444100
rosa_wichuraiana Rw1G039960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 146
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 4 cut(s) 96, 120, 123, 435
AcuI CTGAAG 1 cut(s) 442
AfaI GTAC 4 cut(s) 83, 451, 488, 800
AgsI TTSAA 2 cut(s) 163, 493
AhlI ACTAGT 1 cut(s) 743
AluBI AGCT 7 cut(s) 73, 151, 180, 443, 456, 672, 694
AluI AGCT 7 cut(s) 73, 151, 180, 443, 456, 672, 694
Alw26I GTCTC 2 cut(s) 130, 782
AlwNI CAGNNNCTG 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 44, 209
ApeKI GCWGC 5 cut(s) 180, 443, 617, 620, 672
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 5 cut(s) 44, 195, 291, 563, 685
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 388, 651
AvaII GGWCC 4 cut(s) 195, 291, 563, 685
BbvI GCAGC 5 cut(s) 167, 430, 604, 607, 659
BccI CCATC 5 cut(s) 98, 186, 263, 598, 670
BceAI ACGGC 1 cut(s) 31
BclI TGATCA 2 cut(s) 424, 577
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 130, 782
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 6 cut(s) 447, 453, 599, 695, 744, 771
BfmI CTRYAG 2 cut(s) 181, 621
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 6 cut(s) 121, 181, 444, 618, 621, 673
BlsI GCNGC 6 cut(s) 122, 182, 445, 619, 622, 674
BmcAI AGTACT 2 cut(s) 451, 488
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 4 cut(s) 195, 291, 563, 685
BmgT120I GGNCC 5 cut(s) 44, 195, 291, 563, 685
BmrFI CCNGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 2 cut(s) 108, 582
BsaJI CCNNGG 2 cut(s) 47, 781
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse1I ACTGG 1 cut(s) 484
Bse8I GATNNNNATC 2 cut(s) 108, 582
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 2 cut(s) 47, 781
BseGI GGATG 2 cut(s) 609, 662
BseJI GATNNNNATC 2 cut(s) 108, 582
BseMII CTCAG 2 cut(s) 197, 690
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 5 cut(s) 167, 430, 604, 607, 659
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 46, 211
BsiSI CCGG 2 cut(s) 314, 683
BsmAI GTCTC 2 cut(s) 130, 782
BsnI GGCC 2 cut(s) 46, 211
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 8, 424, 577
BspACI CCGC 4 cut(s) 96, 120, 123, 435
BspANI GGCC 2 cut(s) 46, 211
BspCNI CTCAG 2 cut(s) 198, 689
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 421
BspMAI CTGCAG 2 cut(s) 185, 625
BspMI ACCTGC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 47, 781
BssMI GATC 3 cut(s) 8, 424, 577
BssT1I CCWWGG 1 cut(s) 781
Bst6I CTCTTC 2 cut(s) 158, 240
BstC8I GCNNGC 3 cut(s) 153, 185, 304
BstDEI CTNAG 3 cut(s) 206, 545, 676
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 609, 662
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 3 cut(s) 11, 427, 580
BstMAI GTCTC 2 cut(s) 130, 782
BstMBI GATC 3 cut(s) 8, 424, 577
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 181, 621
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 167, 430, 604, 607, 659
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 46, 211
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 101, 117
BtsCI GGATG 2 cut(s) 609, 662
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 3 cut(s) 153, 185, 304
CaiI CAGNNNCTG 1 cut(s) 672
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 5 cut(s) 44, 195, 291, 563, 685
Csp6I GTAC 4 cut(s) 82, 450, 487, 799
CviAII CATG 9 cut(s) 15, 85, 422, 465, 591, 707, 713, 754, 804
CviQI GTAC 4 cut(s) 82, 450, 487, 799
DdeI CTNAG 3 cut(s) 206, 545, 676
DpnI GATC 3 cut(s) 10, 426, 579
DpnII GATC 3 cut(s) 8, 424, 577
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 158, 240
EarI CTCTTC 2 cut(s) 158, 240
EciI GGCGGA 2 cut(s) 138, 424
Eco130I CCWWGG 1 cut(s) 781
Eco147I AGGCCT 1 cut(s) 211
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 4 cut(s) 195, 291, 563, 685
Eco57I CTGAAG 1 cut(s) 442
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 781
FaeI CATG 9 cut(s) 18, 88, 425, 468, 594, 710, 716, 757, 807
FatI CATG 9 cut(s) 14, 84, 421, 464, 590, 706, 712, 753, 803
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 2 cut(s) 424, 577
Fnu4HI GCNGC 6 cut(s) 121, 181, 444, 618, 621, 673
FokI GGATG 2 cut(s) 616, 649
Fsp4HI GCNGC 6 cut(s) 121, 181, 444, 618, 621, 673
FspBI CTAG 6 cut(s) 447, 453, 599, 695, 744, 771
GlaI GCGC 1 cut(s) 477
GluI GCNGC 6 cut(s) 121, 181, 444, 618, 621, 673
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 2 cut(s) 46, 211
HapII CCGG 2 cut(s) 314, 683
HhaI GCGC 1 cut(s) 478
Hin1II CATG 9 cut(s) 18, 88, 425, 468, 594, 710, 716, 757, 807
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 109, 384, 760
HpaII CCGG 2 cut(s) 314, 683
HphI GGTGA 2 cut(s) 388, 651
Hpy166II GTNNAC 2 cut(s) 51, 801
Hpy188I TCNGA 3 cut(s) 207, 281, 295
Hpy188III TCNNGA 6 cut(s) 220, 337, 346, 422, 666, 683
Hpy8I GTNNAC 2 cut(s) 51, 801
HpyAV CCTTC 2 cut(s) 312, 320
HpyCH4V TGCA 7 cut(s) 155, 183, 416, 514, 572, 623, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 3 cut(s) 206, 545, 676
Hsp92II CATG 9 cut(s) 18, 88, 425, 468, 594, 710, 716, 757, 807
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 682
Ksp22I TGATCA 2 cut(s) 424, 577
Kzo9I GATC 3 cut(s) 8, 424, 577
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 378, 483
Lsp1109I GCAGC 5 cut(s) 167, 430, 604, 607, 659
MaeI CTAG 6 cut(s) 447, 453, 599, 695, 744, 771
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 10, 426, 579
MboI GATC 3 cut(s) 8, 424, 577
MboII GAAGA 6 cut(s) 18, 71, 74, 175, 257, 376
MluCI AATT 4 cut(s) 126, 408, 628, 640
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 6 cut(s) 84, 159, 201, 216, 491, 607
Mph1103I ATGCAT 1 cut(s) 574
MroI TCCGGA 1 cut(s) 682
MseI TTAA 5 cut(s) 35, 359, 627, 740, 811
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 2 cut(s) 314, 683
MspR9I CCNGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 8, 424, 577
NlaIII CATG 9 cut(s) 18, 88, 425, 468, 594, 710, 716, 757, 807
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 18
PagI TCATGA 1 cut(s) 421
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 109, 384, 760
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 6 cut(s) 122, 182, 445, 619, 622, 674
PsiI TTATAA 1 cut(s) 636
PspPI GGNCC 5 cut(s) 44, 195, 291, 563, 685
PstI CTGCAG 2 cut(s) 185, 625
PstNI CAGNNNCTG 1 cut(s) 672
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 4 cut(s) 83, 451, 488, 800
RsaNI GTAC 4 cut(s) 82, 450, 487, 799
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 5 cut(s) 35, 359, 627, 740, 811
SatI GCNGC 6 cut(s) 121, 181, 444, 618, 621, 673
Sau3AI GATC 3 cut(s) 8, 424, 577
Sau96I GGNCC 5 cut(s) 44, 195, 291, 563, 685
ScaI AGTACT 2 cut(s) 451, 488
ScrFI CCNGG 1 cut(s) 315
SfcI CTRYAG 2 cut(s) 181, 621
SinI GGWCC 4 cut(s) 195, 291, 563, 685
SmiMI CAYNNNNRTG 1 cut(s) 711
SpeI ACTAGT 1 cut(s) 743
Sse9I AATT 4 cut(s) 126, 408, 628, 640
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 4 cut(s) 96, 120, 123, 435
SspMI CTAG 6 cut(s) 447, 453, 599, 695, 744, 771
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 781
TaqI TCGA 1 cut(s) 387
TasI AATT 4 cut(s) 126, 408, 628, 640
TatI WGTACW 4 cut(s) 81, 449, 486, 798
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 3 cut(s) 109, 384, 760
Tru1I TTAA 5 cut(s) 35, 359, 627, 740, 811
Tru9I TTAA 5 cut(s) 35, 359, 627, 740, 811
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 5 cut(s) 180, 443, 617, 620, 672
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 39, 81, 579, 773
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 195, 291, 563, 685
XceI RCATGY 1 cut(s) 18
XspI CTAG 6 cut(s) 447, 453, 599, 695, 744, 771
ZrmI AGTACT 2 cut(s) 451, 488
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.