Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018090

Physical Location & Seq

Genomic Coordinates Reverse (-)

211753 .. 213044

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGAAGATCAGCACGTTGTGATGAAAATGGGTTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGAGTACATGGAGAGATGGTCCGAGATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAGCTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATCATCTCTCCACCATAGCTGCTAGTACTAGCTTCAGTCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAAGGGCAAGGACTTCTAATTAGCAACAACGCTGGTCCTAATGCGTATGATCAGTATCGTTCATGTATGCTAGGGATGGAGACGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGGTCATCACCATCCAGAAGCTGCTCAGTTCCGGACCAACAGCTAGTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAACTAGTGCAACCATGATGAATCGTCATTCTAATTGTCTCCAAGGTACTTCTTTCGGGACTAGTGAGTATGATCATCATGATGCCAAGTTTGCCATTCCAAATATGAAAGTTCCATTTAGTACTGATGATGATCATCATAAGCTGCAGTATGGTGAGGGTGGTCATCATGATCATCAATTGCCTGTTTTGGTTTCAGCAGCCACCTCTGCCTACGTCACTATCACTCATGATGATACTACTGCTAATGATCAATTTGCTACCCCAAATATTCCTCATCAGTTTTCTAATAGTATCCATTCATCCACAACTACTACTGCTATTACTACTTCTTCAACGGCCACCTTTGAAATTGATCATGAAGTAGCTTGCGCCGGCCGGGATCTTATAGTTATGGATGATTATCATCAGGAAGCAACTAATAATGATCAGTCTTATTGGAAACACATCATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

37.16

Weight (kDa)

5.29

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 55	7.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 58	4.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g34130
rosa_chinensis	RchiOBHm_Chr1g0384441
rosa_laevigata	RLG00000026040
rosa_multiflora	Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii	Rroxscaffold_4G00276700
rosa_rugosa	Rorug01G0447700
rosa_samantha	Rh1BG430900 Rh1CG444100
rosa_wichuraiana	Rw1G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccIII	TCCGGA	1 cut(s)	487
AclWI	GGATC	1 cut(s)	933
AcoI	YGGCCR	2 cut(s)	882, 919
AcuI	CTGAAG	1 cut(s)	247
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	5 cut(s)	83, 256, 293, 592, 667
AgsI	TTSAA	3 cut(s)	298, 879, 893
AhlI	ACTAGT	2 cut(s)	548, 605
AluBI	AGCT	8 cut(s)	73, 175, 248, 261, 477, 499, 688, 911
AluI	AGCT	8 cut(s)	73, 175, 248, 261, 477, 499, 688, 911
Alw26I	GTCTC	2 cut(s)	407, 587
AlwI	GGATC	1 cut(s)	933
AlwNI	CAGNNNCTG	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	3 cut(s)	44, 882, 919
ApeKI	GCWGC	7 cut(s)	175, 248, 422, 425, 477, 688, 743
AspLEI	GCGC	2 cut(s)	283, 917
AspS9I	GGNCC	4 cut(s)	44, 96, 368, 490
AsuC2I	CCSGG	2 cut(s)	120, 923
AsuHPI	GGTGA	3 cut(s)	193, 456, 710
AvaII	GGWCC	3 cut(s)	96, 368, 490
BbvI	GCAGC	7 cut(s)	162, 235, 409, 412, 464, 675, 755
BccI	CCATC	3 cut(s)	87, 403, 475
BceAI	ACGGC	2 cut(s)	31, 897
BciVI	GTATCC	1 cut(s)	848
BclI	TGATCA	8 cut(s)	229, 382, 616, 676, 715, 793, 898, 970
BcnI	CCSGG	2 cut(s)	120, 923
BcoDI	GTCTC	2 cut(s)	407, 587
BcuI	ACTAGT	2 cut(s)	548, 605
BfaI	CTAG	6 cut(s)	252, 258, 404, 500, 549, 606
BfmI	CTRYAG	2 cut(s)	426, 689
BfoI	RGCGCY	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	7 cut(s)	176, 249, 423, 426, 478, 689, 744
BlsI	GCNGC	7 cut(s)	177, 250, 424, 427, 479, 690, 745
BmcAI	AGTACT	3 cut(s)	256, 293, 667
Bme1390I	CCNGG	2 cut(s)	120, 923
Bme18I	GGWCC	3 cut(s)	96, 368, 490
BmgT120I	GGNCC	4 cut(s)	44, 96, 368, 490
BmrFI	CCNGG	2 cut(s)	120, 923
BmsI	GCATC	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	120, 923
BsaBI	GATNNNNATC	5 cut(s)	387, 675, 678, 945, 948
BsaJI	CCNNGG	2 cut(s)	47, 586
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 284, 314
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	5 cut(s)	387, 675, 678, 945, 948
BseAI	TCCGGA	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	47, 586
BseGI	GGATG	4 cut(s)	414, 467, 845, 946
BseJI	GATNNNNATC	5 cut(s)	387, 675, 678, 945, 948
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	919
BseXI	GCAGC	7 cut(s)	162, 235, 409, 412, 464, 675, 755
Bsh1285I	CGRYCG	1 cut(s)	922
BshFI	GGCC	3 cut(s)	46, 884, 921
BsiEI	CGRYCG	1 cut(s)	922
BsiSI	CCGG	4 cut(s)	119, 488, 918, 922
BslFI	GGGAC	1 cut(s)	616
BsmAI	GTCTC	2 cut(s)	407, 587
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	46, 884, 921
Bsp13I	TCCGGA	1 cut(s)	487
BspANI	GGCC	3 cut(s)	46, 884, 921
BspCNI	CTCAG	1 cut(s)	494
BspEI	TCCGGA	1 cut(s)	487
BspHI	TCATGA	5 cut(s)	226, 622, 712, 772, 901
BspMAI	CTGCAG	2 cut(s)	430, 693
BspPI	GGATC	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	47, 586
BssT1I	CCWWGG	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	109, 913, 919
BstDEI	CTNAG	1 cut(s)	481
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	414, 467, 845, 946
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	283, 917
BstMAI	GTCTC	2 cut(s)	407, 587
BstMCI	CGRYCG	1 cut(s)	922
BstMWI	GCNNNNNNNGC	2 cut(s)	635, 752
BstSCI	CCNGG	2 cut(s)	118, 921
BstSFI	CTRYAG	2 cut(s)	426, 689
BstV1I	GCAGC	7 cut(s)	162, 235, 409, 412, 464, 675, 755
BstX2I	RGATCY	1 cut(s)	925
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	925
BstZI	CGGCCG	1 cut(s)	919
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	3 cut(s)	46, 884, 921
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	414, 467, 845, 946
Cac8I	GCNNGC	3 cut(s)	109, 913, 919
CaiI	CAGNNNCTG	1 cut(s)	477
CciI	TCATGA	5 cut(s)	226, 622, 712, 772, 901
CfoI	GCGC	2 cut(s)	283, 917
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	4 cut(s)	44, 96, 368, 490
Csp6I	GTAC	5 cut(s)	82, 255, 292, 591, 666
CviQI	GTAC	5 cut(s)	82, 255, 292, 591, 666
DdeI	CTNAG	1 cut(s)	481
DraI	TTTAAA	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	882, 919
EagI	CGGCCG	1 cut(s)	919
EclXI	CGGCCG	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	586
Eco47I	GGWCC	3 cut(s)	96, 368, 490
Eco52I	CGGCCG	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	407
FaqI	GGGAC	1 cut(s)	616
FbaI	TGATCA	8 cut(s)	229, 382, 616, 676, 715, 793, 898, 970
Fnu4HI	GCNGC	7 cut(s)	176, 249, 423, 426, 478, 689, 744
FokI	GGATG	4 cut(s)	421, 454, 832, 953
Fsp4HI	GCNGC	7 cut(s)	176, 249, 423, 426, 478, 689, 744
FspBI	CTAG	6 cut(s)	252, 258, 404, 500, 549, 606
GlaI	GCGC	2 cut(s)	282, 916
GluI	GCNGC	7 cut(s)	176, 249, 423, 426, 478, 689, 744
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	46, 884, 921
HapII	CCGG	4 cut(s)	119, 488, 918, 922
HhaI	GCGC	2 cut(s)	283, 917
Hin6I	GCGC	2 cut(s)	281, 915
HinP1I	GCGC	2 cut(s)	281, 915
HinfI	GANTC	2 cut(s)	189, 565
HpaII	CCGG	4 cut(s)	119, 488, 918, 922
HphI	GGTGA	3 cut(s)	193, 456, 710
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	117, 125
HpyCH4IV	ACGT	2 cut(s)	16, 759
HpyCH4V	TGCA	5 cut(s)	221, 319, 428, 554, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	635, 752
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	2 cut(s)	16, 759
HspAI	GCGC	2 cut(s)	281, 915
Kpn2I	TCCGGA	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	917
KroNI	GCCGGC	1 cut(s)	919
Ksp22I	TGATCA	8 cut(s)	229, 382, 616, 676, 715, 793, 898, 970
LmnI	GCTCC	2 cut(s)	183, 288
Lsp1109I	GCAGC	7 cut(s)	162, 235, 409, 412, 464, 675, 755
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	6 cut(s)	252, 258, 404, 500, 549, 606
MaeII	ACGT	2 cut(s)	16, 759
MaeIII	GTNAC	2 cut(s)	199, 760
MboII	GAAGA	5 cut(s)	18, 71, 74, 181, 867
MfeI	CAATTG	1 cut(s)	722
MflI	RGATCY	1 cut(s)	925
MluCI	AATT	8 cut(s)	213, 351, 433, 445, 577, 722, 797, 894
MnlI	CCTC	5 cut(s)	296, 412, 694, 760, 828
MroI	TCCGGA	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	917
MseI	TTAA	4 cut(s)	35, 164, 432, 545
MslI	CAYNNNNRTG	2 cut(s)	516, 624
MspI	CCGG	4 cut(s)	119, 488, 918, 922
MspR9I	CCNGG	2 cut(s)	120, 923
MunI	CAATTG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	635, 752
NaeI	GCCGGC	1 cut(s)	919
NciI	CCSGG	2 cut(s)	120, 923
NgoMIV	GCCGGC	1 cut(s)	917
NmuCI	GTSAC	2 cut(s)	199, 760
PagI	TCATGA	5 cut(s)	226, 622, 712, 772, 901
PdiI	GCCGGC	1 cut(s)	919
PfeI	GAWTC	2 cut(s)	189, 565
PflFI	GACNNNGTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	7 cut(s)	177, 250, 424, 427, 479, 690, 745
PsiI	TTATAA	1 cut(s)	441
PspPI	GGNCC	4 cut(s)	44, 96, 368, 490
PstI	CTGCAG	2 cut(s)	430, 693
PstNI	CAGNNNCTG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	197
RsaI	GTAC	5 cut(s)	83, 256, 293, 592, 667
RsaNI	GTAC	5 cut(s)	82, 255, 292, 591, 666
RseI	CAYNNNNRTG	2 cut(s)	516, 624
SaqAI	TTAA	4 cut(s)	35, 164, 432, 545
SatI	GCNGC	7 cut(s)	176, 249, 423, 426, 478, 689, 744
Sau96I	GGNCC	4 cut(s)	44, 96, 368, 490
ScaI	AGTACT	3 cut(s)	256, 293, 667
ScrFI	CCNGG	2 cut(s)	120, 923
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	2 cut(s)	426, 689
SinI	GGWCC	3 cut(s)	96, 368, 490
SmiMI	CAYNNNNRTG	2 cut(s)	516, 624
SpeI	ACTAGT	2 cut(s)	548, 605
Sse9I	AATT	8 cut(s)	213, 351, 433, 445, 577, 722, 797, 894
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	6 cut(s)	252, 258, 404, 500, 549, 606
StyD4I	CCNGG	2 cut(s)	118, 921
StyI	CCWWGG	1 cut(s)	586
TaiI	ACGT	2 cut(s)	19, 762
TaqI	TCGA	1 cut(s)	192
TasI	AATT	8 cut(s)	213, 351, 433, 445, 577, 722, 797, 894
TatI	WGTACW	4 cut(s)	81, 254, 291, 665
TfiI	GAWTC	2 cut(s)	189, 565
Tru1I	TTAA	4 cut(s)	35, 164, 432, 545
Tru9I	TTAA	4 cut(s)	35, 164, 432, 545
TseFI	GTSAC	2 cut(s)	199, 760
TseI	GCWGC	7 cut(s)	175, 248, 422, 425, 477, 688, 743
Tsp45I	GTSAC	2 cut(s)	199, 760
TspDTI	ATGAA	7 cut(s)	39, 81, 384, 578, 665, 834, 918
TspGWI	ACGGA	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	197
VpaK11BI	GGWCC	3 cut(s)	96, 368, 490
XspI	CTAG	6 cut(s)	252, 258, 404, 500, 549, 606
ZrmI	AGTACT	3 cut(s)	256, 293, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.