Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018090

Physical Location & Seq

Genomic Coordinates Forward (+)

69610034 .. 69628522

Gene Structure 18489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTTCAGGAGAAGATCCTGAACCAACAAATGAGATGGTCCGAGATAGCAAGCAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAGCTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATCATCTCTCCACCATAGCTGCTAGTACTAGCTTCAGTCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAAGGGCAAGGACTTCTAATTAGCAACAACGCTGGTCCTAATGCATATGATCAGTATCGTTCATGTATGCTAGGGATGGAGATGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGTTCATCACCATCCAGAAGCTGCTCAGTTCCAGACCAACAGCTAGTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAACTAGTGCAACCATGATGAATCGTCATTCTAATTGTCTCCAAGGTTTTACTTTGCGCTCCCGCATAAAATTATCAAGACAATGTAGAGGCAGGGATATAATTTCAAACCCATGCAAGTTTGTATATGAAAATCATGCTAAAGCTGTGCTGACTGAAGGTTTAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

219

Amino Acids

24.74

Weight (kDa)

8.19

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 36	4.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g34130
rosa_chinensis	RchiOBHm_Chr1g0384441
rosa_laevigata	RLG00000026040
rosa_multiflora	Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii	Rroxscaffold_4G00276700
rosa_rugosa	Rorug01G0447700
rosa_samantha	Rh1BG430900 Rh1CG444100
rosa_wichuraiana	Rw1G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	2 cut(s)	199, 236
AgsI	TTSAA	2 cut(s)	241, 594
AhlI	ACTAGT	1 cut(s)	491
AluBI	AGCT	6 cut(s)	118, 191, 204, 420, 442, 632
AluI	AGCT	6 cut(s)	118, 191, 204, 420, 442, 632
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	420
ApeKI	GCWGC	5 cut(s)	118, 191, 365, 368, 420
AspLEI	GCGC	2 cut(s)	226, 546
AspS9I	GGNCC	2 cut(s)	39, 311
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	136, 399
AvaII	GGWCC	2 cut(s)	39, 311
BbvI	GCAGC	5 cut(s)	105, 178, 352, 355, 407
BccI	CCATC	4 cut(s)	30, 346, 352, 418
BclI	TGATCA	2 cut(s)	172, 325
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	530
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	5 cut(s)	195, 201, 347, 443, 492
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	5 cut(s)	119, 192, 366, 369, 421
BlsI	GCNGC	5 cut(s)	120, 193, 367, 370, 422
BmcAI	AGTACT	2 cut(s)	199, 236
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	2 cut(s)	39, 311
BmgT120I	GGNCC	2 cut(s)	39, 311
BmrFI	CCNGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	357, 410
BseJI	GATNNNNATC	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	5 cut(s)	105, 178, 352, 355, 407
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	15, 172, 325
BspACI	CCGC	1 cut(s)	550
BspCNI	CTCAG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	3 cut(s)	15, 172, 325
BssT1I	CCWWGG	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	357, 410
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 546
BstKTI	GATC	3 cut(s)	18, 175, 328
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	15, 172, 325
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	5 cut(s)	105, 178, 352, 355, 407
BstX2I	RGATCY	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	357, 410
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	2 cut(s)	226, 546
Cfr13I	GGNCC	2 cut(s)	39, 311
Csp6I	GTAC	2 cut(s)	198, 235
CviAII	CATG	8 cut(s)	170, 213, 339, 455, 461, 502, 600, 623
CviJI	RGCY	7 cut(s)	118, 191, 204, 365, 420, 442, 632
CviKI_1	RGCY	7 cut(s)	118, 191, 204, 365, 420, 442, 632
CviQI	GTAC	2 cut(s)	198, 235
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	3 cut(s)	17, 174, 327
DpnII	GATC	3 cut(s)	15, 172, 325
DraI	TTTAAA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	39, 311
Eco57I	CTGAAG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	8 cut(s)	173, 216, 342, 458, 464, 505, 603, 626
FatI	CATG	8 cut(s)	169, 212, 338, 454, 460, 501, 599, 622
FauI	CCCGC	1 cut(s)	557
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	2 cut(s)	172, 325
Fnu4HI	GCNGC	5 cut(s)	119, 192, 366, 369, 421
FokI	GGATG	2 cut(s)	364, 397
Fsp4HI	GCNGC	5 cut(s)	119, 192, 366, 369, 421
FspBI	CTAG	5 cut(s)	195, 201, 347, 443, 492
GlaI	GCGC	2 cut(s)	225, 545
GluI	GCNGC	5 cut(s)	119, 192, 366, 369, 421
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	2 cut(s)	226, 546
Hin1II	CATG	8 cut(s)	173, 216, 342, 458, 464, 505, 603, 626
Hin6I	GCGC	2 cut(s)	224, 544
HinP1I	GCGC	2 cut(s)	224, 544
HinfI	GANTC	2 cut(s)	132, 508
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	136, 399
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	8 cut(s)	8, 19, 85, 94, 170, 414, 431, 564
HpyAV	CCTTC	3 cut(s)	60, 68, 638
HpyCH4V	TGCA	6 cut(s)	164, 262, 320, 371, 497, 603
HpyF3I	CTNAG	1 cut(s)	424
Hsp92II	CATG	8 cut(s)	173, 216, 342, 458, 464, 505, 603, 626
HspAI	GCGC	2 cut(s)	224, 544
Ksp22I	TGATCA	2 cut(s)	172, 325
Kzo9I	GATC	3 cut(s)	15, 172, 325
LmnI	GCTCC	3 cut(s)	126, 231, 551
LpnPI	CCDG	8 cut(s)	32, 75, 79, 245, 294, 427, 444, 565
Lsp1109I	GCAGC	5 cut(s)	105, 178, 352, 355, 407
MaeI	CTAG	5 cut(s)	195, 201, 347, 443, 492
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	17, 174, 327
MboI	GATC	3 cut(s)	15, 172, 325
MboII	GAAGA	2 cut(s)	25, 124
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	7 cut(s)	156, 294, 376, 388, 520, 557, 588
MnlI	CCTC	3 cut(s)	239, 355, 569
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	107, 375, 488
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	15, 172, 325
NlaIII	CATG	8 cut(s)	173, 216, 342, 458, 464, 505, 603, 626
NmuCI	GTSAC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	322
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	132, 508
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	120, 193, 367, 370, 422
PsiI	TTATAA	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	39, 311
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	199, 236
RsaNI	GTAC	2 cut(s)	198, 235
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	107, 375, 488
SatI	GCNGC	5 cut(s)	119, 192, 366, 369, 421
Sau3AI	GATC	3 cut(s)	15, 172, 325
Sau96I	GGNCC	2 cut(s)	39, 311
ScaI	AGTACT	2 cut(s)	199, 236
ScrFI	CCNGG	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	39, 311
SmiMI	CAYNNNNRTG	1 cut(s)	459
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	7 cut(s)	156, 294, 376, 388, 520, 557, 588
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	5 cut(s)	195, 201, 347, 443, 492
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	529
TaqI	TCGA	1 cut(s)	135
TasI	AATT	7 cut(s)	156, 294, 376, 388, 520, 557, 588
TatI	WGTACW	2 cut(s)	197, 234
TfiI	GAWTC	2 cut(s)	132, 508
Tru1I	TTAA	3 cut(s)	107, 375, 488
Tru9I	TTAA	3 cut(s)	107, 375, 488
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	5 cut(s)	118, 191, 365, 368, 420
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	327, 393, 521, 630
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	39, 311
XspI	CTAG	5 cut(s)	195, 201, 347, 443, 492
ZrmI	AGTACT	2 cut(s)	199, 236
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.