Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016737.1

Orthogroup ID

OG0018090

Physical Location & Seq

Genomic Coordinates Forward (+)

43056 .. 44350

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016737.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgggaagatcagcatgttgtgatgaaaatggattaaagaaagggccgtggacagcagaagaagatgaaaagctggtggagtacatggagaggtgcggtggcgatgggaatcatcatcgcggtggaattagttggagacaagtgccaaagcttgcaggtttgaagaggtgtggaaagagctgcaggctacgatggaccaactatctgaggtctgatatcaagaggggaaacttctcccaccaagaagagcaaaccatcatcaatctccacaaactgctaggaaacaaatggtcagagatagcaagcaaccttccgggaaggactgataacgaaatcaagaacttctggaacacccatttaaagaagaaactgctccaaatgggaatcgaccccgtcacccacacaccaatttctgcaactcatgatcatctctccgccatagctgctagtactagcttcagtacatgcgattgggcgctcctccagtacttgaactccaaaatccaagtgttgcaaaataatatactacaagggcaaggacttctaattagcaacaacgctggtcctaatgcatatgatcagtatcgttcatgtgtgctagggatggatatggaggctgctgcagttaattattataataattatgttttagggtcatcaccatccagaagctgctcagttccggaccaacagctactatatcatcatgggcatggacttggatatgattatgatgatttaactagtgcaaccatgatgaatcgtcattctagttgtctccaaggtacttctttcgggactagtgagtatgatcatcatgattccaagtttgccattccaaatatgaaagttccatttagtactgatgatcatcatcataagctacagtatggtgagggtggtcatcatgatcatcaattgcctgttttggtttcagcagccacctcggcctacgtcactatcactcatgatactactgctgctaatgatcaatttgctaccccatatattcctcatcagttttctaacagtacccattcatccacaactactactactactattactacttcttcaacggccacctttgaaattgatcatgaagtagcttgcgccggccgggatcttatagttatggatgattatcatcaggaagcaactaataatgatcagtcttattggaaacacatcatggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

399

Amino Acids

44.63

Weight (kDa)

6.15

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018090)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g34130
rosa_chinensis	RchiOBHm_Chr1g0384441
rosa_laevigata	RLG00000026040
rosa_multiflora	Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii	Rroxscaffold_4G00276700
rosa_rugosa	Rorug01G0447700
rosa_samantha	Rh1BG430900 Rh1CG444100
rosa_wichuraiana	Rw1G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	146
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	3 cut(s)	96, 120, 435
AclWI	GGATC	1 cut(s)	1131
AcoI	YGGCCR	2 cut(s)	1080, 1117
AcuI	CTGAAG	1 cut(s)	442
AfaI	GTAC	7 cut(s)	83, 451, 463, 488, 787, 862, 1033
AgsI	TTSAA	4 cut(s)	163, 493, 1077, 1091
AhlI	ACTAGT	2 cut(s)	743, 800
AluBI	AGCT	9 cut(s)	73, 151, 180, 443, 456, 672, 694, 883, 1109
AluI	AGCT	9 cut(s)	73, 151, 180, 443, 456, 672, 694, 883, 1109
Alw26I	GTCTC	2 cut(s)	130, 782
AlwI	GGATC	1 cut(s)	1131
AlwNI	CAGNNNCTG	1 cut(s)	672
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	4 cut(s)	44, 948, 1080, 1117
ApeKI	GCWGC	7 cut(s)	180, 443, 617, 620, 672, 938, 980
AspLEI	GCGC	2 cut(s)	478, 1115
AspS9I	GGNCC	4 cut(s)	44, 195, 563, 685
AsuC2I	CCSGG	2 cut(s)	315, 1121
AsuHPI	GGTGA	3 cut(s)	388, 651, 905
AvaII	GGWCC	3 cut(s)	195, 563, 685
BbvI	GCAGC	7 cut(s)	167, 430, 604, 607, 659, 950, 967
BccI	CCATC	5 cut(s)	98, 186, 263, 598, 670
BceAI	ACGGC	2 cut(s)	31, 1095
BcgI	CGANNNNNNTGC	2 cut(s)	927, 961
BclI	TGATCA	8 cut(s)	424, 577, 811, 868, 910, 988, 1096, 1168
BcnI	CCSGG	2 cut(s)	315, 1121
BcoDI	GTCTC	2 cut(s)	130, 782
BcuI	ACTAGT	2 cut(s)	743, 800
BfaI	CTAG	7 cut(s)	278, 447, 453, 599, 744, 771, 801
BfmI	CTRYAG	3 cut(s)	181, 621, 884
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	947
BisI	GCNGC	7 cut(s)	181, 444, 618, 621, 673, 939, 981
BlsI	GCNGC	7 cut(s)	182, 445, 619, 622, 674, 940, 982
BmcAI	AGTACT	3 cut(s)	451, 488, 862
Bme1390I	CCNGG	2 cut(s)	315, 1121
Bme18I	GGWCC	3 cut(s)	195, 563, 685
BmgT120I	GGNCC	4 cut(s)	44, 195, 563, 685
BmrFI	CCNGG	2 cut(s)	315, 1121
BpmI	CTGGAG	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	315, 1121
BsaBI	GATNNNNATC	6 cut(s)	108, 582, 870, 873, 1143, 1146
BsaJI	CCNNGG	3 cut(s)	47, 781, 945
BsaWI	WCCGGW	1 cut(s)	682
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bse118I	RCCGGY	1 cut(s)	1115
Bse1I	ACTGG	1 cut(s)	484
Bse8I	GATNNNNATC	6 cut(s)	108, 582, 870, 873, 1143, 1146
BseAI	TCCGGA	1 cut(s)	682
BseDI	CCNNGG	3 cut(s)	47, 781, 945
BseGI	GGATG	4 cut(s)	609, 662, 1040, 1144
BseJI	GATNNNNATC	6 cut(s)	108, 582, 870, 873, 1143, 1146
BseMII	CTCAG	2 cut(s)	197, 690
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	470
BseX3I	CGGCCG	1 cut(s)	1117
BseXI	GCAGC	7 cut(s)	167, 430, 604, 607, 659, 950, 967
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	1120
BshFI	GGCC	4 cut(s)	46, 950, 1082, 1119
BsiEI	CGRYCG	1 cut(s)	1120
BsiSI	CCGG	4 cut(s)	314, 683, 1116, 1120
BslFI	GGGAC	1 cut(s)	811
BsmAI	GTCTC	2 cut(s)	130, 782
BsmFI	GGGAC	1 cut(s)	811
BsnI	GGCC	4 cut(s)	46, 950, 1082, 1119
Bsp13I	TCCGGA	1 cut(s)	682
BspACI	CCGC	3 cut(s)	96, 120, 435
BspANI	GGCC	4 cut(s)	46, 950, 1082, 1119
BspCNI	CTCAG	2 cut(s)	198, 689
BspEI	TCCGGA	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	5 cut(s)	421, 817, 907, 967, 1099
BspMAI	CTGCAG	2 cut(s)	185, 625
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	1131
BspQI	GCTCTTC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	1115
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	1115
BssECI	CCNNGG	3 cut(s)	47, 781, 945
BssT1I	CCWWGG	1 cut(s)	781
Bst4CI	ACNGT	2 cut(s)	888, 1031
Bst6I	CTCTTC	2 cut(s)	158, 240
BstC8I	GCNNGC	5 cut(s)	153, 185, 304, 1111, 1117
BstDEI	CTNAG	2 cut(s)	206, 676
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	609, 662, 1040, 1144
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 1115
BstMAI	GTCTC	2 cut(s)	130, 782
BstMCI	CGRYCG	1 cut(s)	1120
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 947
BstNSI	RCATGY	2 cut(s)	18, 468
BstSCI	CCNGG	2 cut(s)	313, 1119
BstSFI	CTRYAG	3 cut(s)	181, 621, 884
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	7 cut(s)	167, 430, 604, 607, 659, 950, 967
BstX2I	RGATCY	1 cut(s)	1123
BstYI	RGATCY	1 cut(s)	1123
BstZI	CGGCCG	1 cut(s)	1117
BsuRI	GGCC	4 cut(s)	46, 950, 1082, 1119
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	2 cut(s)	101, 117
BtsCI	GGATG	4 cut(s)	609, 662, 1040, 1144
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	5 cut(s)	153, 185, 304, 1111, 1117
CaiI	CAGNNNCTG	1 cut(s)	672
CciI	TCATGA	5 cut(s)	421, 817, 907, 967, 1099
CfoI	GCGC	2 cut(s)	478, 1115
Cfr10I	RCCGGY	1 cut(s)	1115
Cfr13I	GGNCC	4 cut(s)	44, 195, 563, 685
Csp6I	GTAC	7 cut(s)	82, 450, 462, 487, 786, 861, 1032
CviQI	GTAC	7 cut(s)	82, 450, 462, 487, 786, 861, 1032
DdeI	CTNAG	2 cut(s)	206, 676
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	1080, 1117
EagI	CGGCCG	1 cut(s)	1117
Eam1104I	CTCTTC	2 cut(s)	158, 240
EarI	CTCTTC	2 cut(s)	158, 240
EciI	GGCGGA	1 cut(s)	424
EclXI	CGGCCG	1 cut(s)	1117
Eco130I	CCWWGG	1 cut(s)	781
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	195, 563, 685
Eco52I	CGGCCG	1 cut(s)	1117
Eco57I	CTGAAG	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	781
FaqI	GGGAC	1 cut(s)	811
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	8 cut(s)	424, 577, 811, 868, 910, 988, 1096, 1168
Fnu4HI	GCNGC	7 cut(s)	181, 444, 618, 621, 673, 939, 981
FokI	GGATG	4 cut(s)	616, 649, 1027, 1151
Fsp4HI	GCNGC	7 cut(s)	181, 444, 618, 621, 673, 939, 981
FspBI	CTAG	7 cut(s)	278, 447, 453, 599, 744, 771, 801
GlaI	GCGC	2 cut(s)	477, 1114
GluI	GCNGC	7 cut(s)	181, 444, 618, 621, 673, 939, 981
GsuI	CTGGAG	1 cut(s)	467
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	46, 950, 1082, 1119
HapII	CCGG	4 cut(s)	314, 683, 1116, 1120
HhaI	GCGC	2 cut(s)	478, 1115
Hin6I	GCGC	2 cut(s)	476, 1113
HinP1I	GCGC	2 cut(s)	476, 1113
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	109, 384, 760, 821
HpaII	CCGG	4 cut(s)	314, 683, 1116, 1120
HphI	GGTGA	3 cut(s)	388, 651, 905
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	207, 214, 295
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	312, 320
HpyCH4III	ACNGT	2 cut(s)	888, 1031
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	155, 183, 416, 514, 572, 623, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 947
HpyF3I	CTNAG	2 cut(s)	206, 676
HpySE526I	ACGT	1 cut(s)	954
HspAI	GCGC	2 cut(s)	476, 1113
Kpn2I	TCCGGA	1 cut(s)	682
KroI	GCCGGC	1 cut(s)	1115
KroNI	GCCGGC	1 cut(s)	1117
Ksp22I	TGATCA	8 cut(s)	424, 577, 811, 868, 910, 988, 1096, 1168
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	378, 483
Lsp1109I	GCAGC	7 cut(s)	167, 430, 604, 607, 659, 950, 967
MaeI	CTAG	7 cut(s)	278, 447, 453, 599, 744, 771, 801
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	394, 955
MboII	GAAGA	7 cut(s)	18, 71, 74, 175, 257, 376, 1065
MfeI	CAATTG	1 cut(s)	917
MflI	RGATCY	1 cut(s)	1123
MluCI	AATT	8 cut(s)	126, 408, 546, 628, 640, 917, 992, 1092
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	9 cut(s)	84, 159, 201, 216, 491, 607, 889, 955, 1023
Mph1103I	ATGCAT	1 cut(s)	574
MroI	TCCGGA	1 cut(s)	682
MroNI	GCCGGC	1 cut(s)	1115
MseI	TTAA	4 cut(s)	35, 359, 627, 740
MslI	CAYNNNNRTG	2 cut(s)	120, 711
MspI	CCGG	4 cut(s)	314, 683, 1116, 1120
MspR9I	CCNGG	2 cut(s)	315, 1121
MunI	CAATTG	1 cut(s)	917
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	443, 947
NaeI	GCCGGC	1 cut(s)	1117
NciI	CCSGG	2 cut(s)	315, 1121
NdeI	CATATG	1 cut(s)	574
NgoMIV	GCCGGC	1 cut(s)	1115
NmeAIII	GCCGAG	1 cut(s)	926
NmuCI	GTSAC	2 cut(s)	394, 955
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	2 cut(s)	18, 468
PagI	TCATGA	5 cut(s)	421, 817, 907, 967, 1099
PciSI	GCTCTTC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	1117
PfeI	GAWTC	4 cut(s)	109, 384, 760, 821
PflFI	GACNNNGTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	7 cut(s)	182, 445, 619, 622, 674, 940, 982
PsiI	TTATAA	1 cut(s)	636
PspPI	GGNCC	4 cut(s)	44, 195, 563, 685
PstI	CTGCAG	2 cut(s)	185, 625
PstNI	CAGNNNCTG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	1123
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	7 cut(s)	83, 451, 463, 488, 787, 862, 1033
RsaNI	GTAC	7 cut(s)	82, 450, 462, 487, 786, 861, 1032
RseI	CAYNNNNRTG	2 cut(s)	120, 711
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	35, 359, 627, 740
SatI	GCNGC	7 cut(s)	181, 444, 618, 621, 673, 939, 981
Sau96I	GGNCC	4 cut(s)	44, 195, 563, 685
ScaI	AGTACT	3 cut(s)	451, 488, 862
ScrFI	CCNGG	2 cut(s)	315, 1121
SfcI	CTRYAG	3 cut(s)	181, 621, 884
SinI	GGWCC	3 cut(s)	195, 563, 685
SmiMI	CAYNNNNRTG	2 cut(s)	120, 711
SpeI	ACTAGT	2 cut(s)	743, 800
Sse9I	AATT	8 cut(s)	126, 408, 546, 628, 640, 917, 992, 1092
SsiI	CCGC	3 cut(s)	96, 120, 435
SspMI	CTAG	7 cut(s)	278, 447, 453, 599, 744, 771, 801
StyD4I	CCNGG	2 cut(s)	313, 1119
StyI	CCWWGG	1 cut(s)	781
TaaI	ACNGT	2 cut(s)	888, 1031
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	387
TasI	AATT	8 cut(s)	126, 408, 546, 628, 640, 917, 992, 1092
TatI	WGTACW	5 cut(s)	81, 449, 461, 486, 860
TfiI	GAWTC	4 cut(s)	109, 384, 760, 821
Tru1I	TTAA	4 cut(s)	35, 359, 627, 740
Tru9I	TTAA	4 cut(s)	35, 359, 627, 740
TseFI	GTSAC	2 cut(s)	394, 955
TseI	GCWGC	7 cut(s)	180, 443, 617, 620, 672, 938, 980
Tsp45I	GTSAC	2 cut(s)	394, 955
TspDTI	ATGAA	7 cut(s)	39, 81, 579, 773, 860, 1029, 1116
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	195, 563, 685
XceI	RCATGY	2 cut(s)	18, 468
XspI	CTAG	7 cut(s)	278, 447, 453, 599, 744, 771, 801
ZrmI	AGTACT	3 cut(s)	451, 488, 862
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.