RLG00000026040
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018090
Physical Location & Seq
Reverse (-)
200157 .. 201485
1329 bp
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UTR
Exon/CDS
Intron
RLM00000026040

Sequence Viewer

Length: 1197 bp
ATGGGAAGATCAGCATGTTGTGATGAAAATGGGTTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGAGTACATGGAGAGGTGCGGTGGCGATGGGAATCATCATCGCGGCGGAATTAGTTGGAGACAAGTGCCAAAGCTTGCAGGTTTGAAGAGGTGTGGAAAGAGCTGCAGGCTACGATGGATCAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGCAAACCATCATCAATCTCCAAAAACTGCTCGGAAACAAATGGTCCGAGATAGCAAGTAACCTTCCGGGAAGGACTGATAACGAAATCAAGAACTTCTGGAACACCCATTTAAAGAAGAAGCTGCTCCAAATGGGAATCGACCCCGTCACCCACACACCAATTTCTGCAACTCATGATTATCTCTCCACCATAGCTGCTTGTACTAGCTTCGGTCCATGCGATTGGGCGCTCCTCCAGTACTTGAACTCCAAAATCCAAGTGTTGCAAAATAATATACTACAAGGGCAAGGACTTCTAATTAGCAACAACACTGGTCCTAATGCATATGATCAGTATCGTTCATGTATGCTAGGGATGGAGATGGAGGCTGCTGCAGTTAATTATTATAATAATTATGTTTTAGGGTCATCACCATCCCGAAGCTGCTCAGTTCCGGACCAACAGCTAGTATATCATCATGGGCATGGACTTGGATATGATTATGATGATTTAACTAGTGCAACCATGATGAATCGCCATTCTAATTGTCTCCAAGGTACTTCTTTCGGGACTAGTGAGTGTGATCATCATGATTCCAAGTTTGCCATTCCAAATATGAAAGTTCCATCCAGTACTGATGATCATCATCATAAGCTGCAGTATGGTGAGGGTGGTCATCATGATCATCAATTGCCTGTTTTGGTTTCAGCAGCCACCTCGGCCTACGTCACTATCACTCATGATACTACTGCTAATGATCAATTTGCAACCCCAAATATTCCTCAGCATCAGTTTTCTGACAGTATCCATTCATCCACAACTACTACTACTATTACTACTTCTTCAACGGCCACCTTTGAAATTGATCATGAAGTAGCTTGCGCCGGCCGGGATCTTATAGTTATGGATGATTATCATCAGGAAGCAACTAATACTGATCAGTCTTATTGGAAACACATCATGGAGTGA

Protein Analysis

399

Amino Acids

44.56

Weight (kDa)

6.03

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 69 6.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 85 6.1e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 120 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 123 1.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g34130
rosa_chinensis RchiOBHm_Chr1g0384441
rosa_laevigata RLG00000026040
rosa_multiflora Rmu_co8025450.1_g000001 Rmu_sc0013987.1_g000006 Rmu_sc0016737.1_g000015
rosa_roxburghii Rroxscaffold_4G00276700
rosa_rugosa Rorug01G0447700
rosa_samantha Rh1BG430900 Rh1CG444100
rosa_wichuraiana Rw1G039960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 146
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 96, 120, 123
AclWI GGATC 2 cut(s) 203, 1128
AcoI YGGCCR 2 cut(s) 1077, 1114
AfaI GTAC 5 cut(s) 83, 451, 488, 787, 862
AgsI TTSAA 4 cut(s) 163, 493, 1074, 1088
AhlI ACTAGT 2 cut(s) 743, 800
Alw26I GTCTC 2 cut(s) 130, 782
AlwI GGATC 2 cut(s) 203, 1128
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 5 cut(s) 44, 209, 948, 1077, 1114
ApeKI GCWGC 8 cut(s) 180, 370, 443, 617, 620, 672, 883, 938
AspLEI GCGC 2 cut(s) 478, 1112
AspS9I GGNCC 5 cut(s) 44, 291, 461, 563, 685
AsuC2I CCSGG 2 cut(s) 315, 1118
AsuHPI GGTGA 3 cut(s) 388, 651, 905
AvaII GGWCC 4 cut(s) 291, 461, 563, 685
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
BccI CCATC 7 cut(s) 98, 186, 263, 598, 604, 670, 862
BceAI ACGGC 2 cut(s) 31, 1092
BcgI CGANNNNNNTGC 2 cut(s) 927, 961
BciVI GTATCC 1 cut(s) 1043
BclI TGATCA 7 cut(s) 577, 811, 868, 910, 985, 1093, 1165
BcnI CCSGG 2 cut(s) 315, 1118
BcoDI GTCTC 2 cut(s) 130, 782
BcuI ACTAGT 2 cut(s) 743, 800
BfaI CTAG 5 cut(s) 453, 599, 695, 744, 801
BfmI CTRYAG 3 cut(s) 181, 621, 884
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 1043
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
BlsI GCNGC 9 cut(s) 122, 182, 372, 445, 619, 622, 674, 885, 940
BmcAI AGTACT 2 cut(s) 488, 862
Bme1390I CCNGG 2 cut(s) 315, 1118
Bme18I GGWCC 4 cut(s) 291, 461, 563, 685
BmgT120I GGNCC 5 cut(s) 44, 291, 461, 563, 685
BmrFI CCNGG 2 cut(s) 315, 1118
BmsI GCATC 1 cut(s) 1024
BpmI CTGGAG 1 cut(s) 467
Bpu10I CCTNAGC 1 cut(s) 1011
BpuMI CCSGG 2 cut(s) 315, 1118
BsaBI GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1140, 1143
BsaJI CCNNGG 3 cut(s) 47, 781, 945
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse118I RCCGGY 1 cut(s) 1112
Bse1I ACTGG 3 cut(s) 484, 565, 858
Bse8I GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1140, 1143
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 47, 781, 945
BseGI GGATG 5 cut(s) 609, 662, 854, 1040, 1141
BseJI GATNNNNATC 6 cut(s) 108, 582, 870, 873, 1140, 1143
BseMII CTCAG 3 cut(s) 197, 690, 1025
BseNI ACTGG 3 cut(s) 484, 565, 858
BseRI GAGGAG 1 cut(s) 470
BseX3I CGGCCG 1 cut(s) 1114
BseXI GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 1117
BshFI GGCC 5 cut(s) 46, 211, 950, 1079, 1116
BsiEI CGRYCG 1 cut(s) 1117
BsiSI CCGG 4 cut(s) 314, 683, 1113, 1117
BslFI GGGAC 1 cut(s) 811
BsmAI GTCTC 2 cut(s) 130, 782
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 5 cut(s) 46, 211, 950, 1079, 1116
Bsp13I TCCGGA 1 cut(s) 682
BspACI CCGC 3 cut(s) 96, 120, 123
BspANI GGCC 5 cut(s) 46, 211, 950, 1079, 1116
BspCNI CTCAG 3 cut(s) 198, 689, 1024
BspEI TCCGGA 1 cut(s) 682
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 5 cut(s) 421, 817, 907, 967, 1096
BspMAI CTGCAG 3 cut(s) 185, 625, 888
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 2 cut(s) 203, 1128
BspQI GCTCTTC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 1112
BsrI ACTGG 3 cut(s) 484, 565, 858
BssAI RCCGGY 1 cut(s) 1112
BssECI CCNNGG 3 cut(s) 47, 781, 945
BssT1I CCWWGG 1 cut(s) 781
Bst4CI ACNGT 1 cut(s) 1031
Bst6I CTCTTC 2 cut(s) 158, 240
BstC8I GCNNGC 4 cut(s) 153, 185, 1108, 1114
BstDEI CTNAG 3 cut(s) 206, 676, 1011
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 609, 662, 854, 1040, 1141
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 478, 1112
BstMAI GTCTC 2 cut(s) 130, 782
BstMCI CGRYCG 1 cut(s) 1117
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 313, 1116
BstSFI CTRYAG 3 cut(s) 181, 621, 884
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
BstX2I RGATCY 1 cut(s) 1120
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 1 cut(s) 1120
BstZI CGGCCG 1 cut(s) 1114
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 5 cut(s) 46, 211, 950, 1079, 1116
BtgI CCRYGG 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 101, 117
BtsCI GGATG 5 cut(s) 609, 662, 854, 1040, 1141
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 4 cut(s) 153, 185, 1108, 1114
CciI TCATGA 5 cut(s) 421, 817, 907, 967, 1096
CfoI GCGC 2 cut(s) 478, 1112
Cfr10I RCCGGY 1 cut(s) 1112
Cfr13I GGNCC 5 cut(s) 44, 291, 461, 563, 685
Csp6I GTAC 5 cut(s) 82, 450, 487, 786, 861
CviQI GTAC 5 cut(s) 82, 450, 487, 786, 861
DdeI CTNAG 3 cut(s) 206, 676, 1011
DraI TTTAAA 1 cut(s) 360
EaeI YGGCCR 2 cut(s) 1077, 1114
EagI CGGCCG 1 cut(s) 1114
Eam1104I CTCTTC 2 cut(s) 158, 240
EarI CTCTTC 2 cut(s) 158, 240
EciI GGCGGA 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 1114
Eco130I CCWWGG 1 cut(s) 781
Eco147I AGGCCT 1 cut(s) 211
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 4 cut(s) 291, 461, 563, 685
Eco52I CGGCCG 1 cut(s) 1114
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 781
FaqI GGGAC 1 cut(s) 811
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 7 cut(s) 577, 811, 868, 910, 985, 1093, 1165
Fnu4HI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
FokI GGATG 5 cut(s) 616, 649, 841, 1027, 1148
Fsp4HI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
FspBI CTAG 5 cut(s) 453, 599, 695, 744, 801
GlaI GCGC 2 cut(s) 477, 1111
GluI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
GsuI CTGGAG 1 cut(s) 467
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 5 cut(s) 46, 211, 950, 1079, 1116
HapII CCGG 4 cut(s) 314, 683, 1113, 1117
HhaI GCGC 2 cut(s) 478, 1112
Hin6I GCGC 2 cut(s) 476, 1110
HinP1I GCGC 2 cut(s) 476, 1110
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 4 cut(s) 109, 384, 760, 821
HpaII CCGG 4 cut(s) 314, 683, 1113, 1117
HphI GGTGA 3 cut(s) 388, 651, 905
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 207, 281, 295, 1027
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 312, 320
HpyCH4III ACNGT 1 cut(s) 1031
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 9 cut(s) 155, 183, 416, 514, 572, 623, 749, 886, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpyF3I CTNAG 3 cut(s) 206, 676, 1011
HpySE526I ACGT 1 cut(s) 954
HspAI GCGC 2 cut(s) 476, 1110
Kpn2I TCCGGA 1 cut(s) 682
KroI GCCGGC 1 cut(s) 1112
KroNI GCCGGC 1 cut(s) 1114
Ksp22I TGATCA 7 cut(s) 577, 811, 868, 910, 985, 1093, 1165
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 378, 483
Lsp1109I GCAGC 8 cut(s) 167, 357, 430, 604, 607, 659, 870, 950
LweI GCATC 1 cut(s) 1024
MaeI CTAG 5 cut(s) 453, 599, 695, 744, 801
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 3 cut(s) 305, 394, 955
MboII GAAGA 7 cut(s) 18, 71, 74, 175, 257, 376, 1062
MfeI CAATTG 1 cut(s) 917
MflI RGATCY 1 cut(s) 1120
MluCI AATT 9 cut(s) 126, 408, 546, 628, 640, 772, 917, 989, 1089
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 9 cut(s) 84, 159, 201, 216, 491, 607, 889, 955, 1020
Mph1103I ATGCAT 1 cut(s) 574
MroI TCCGGA 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 1112
MseI TTAA 4 cut(s) 35, 359, 627, 740
MslI CAYNNNNRTG 1 cut(s) 711
MspI CCGG 4 cut(s) 314, 683, 1113, 1117
MspR9I CCNGG 2 cut(s) 315, 1118
MunI CAATTG 1 cut(s) 917
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 947
NaeI GCCGGC 1 cut(s) 1114
NciI CCSGG 2 cut(s) 315, 1118
NdeI CATATG 1 cut(s) 574
NgoMIV GCCGGC 1 cut(s) 1112
NmeAIII GCCGAG 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 394, 955
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 18
PagI TCATGA 5 cut(s) 421, 817, 907, 967, 1096
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PdiI GCCGGC 1 cut(s) 1114
PfeI GAWTC 4 cut(s) 109, 384, 760, 821
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 9 cut(s) 122, 182, 372, 445, 619, 622, 674, 885, 940
PsiI TTATAA 1 cut(s) 636
PspPI GGNCC 5 cut(s) 44, 291, 461, 563, 685
PstI CTGCAG 3 cut(s) 185, 625, 888
PsuI RGATCY 1 cut(s) 1120
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 5 cut(s) 83, 451, 488, 787, 862
RsaNI GTAC 5 cut(s) 82, 450, 487, 786, 861
RseI CAYNNNNRTG 1 cut(s) 711
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 4 cut(s) 35, 359, 627, 740
SatI GCNGC 9 cut(s) 121, 181, 371, 444, 618, 621, 673, 884, 939
Sau96I GGNCC 5 cut(s) 44, 291, 461, 563, 685
ScaI AGTACT 2 cut(s) 488, 862
ScrFI CCNGG 2 cut(s) 315, 1118
SfaNI GCATC 1 cut(s) 1024
SfcI CTRYAG 3 cut(s) 181, 621, 884
SinI GGWCC 4 cut(s) 291, 461, 563, 685
SmiMI CAYNNNNRTG 1 cut(s) 711
SpeI ACTAGT 2 cut(s) 743, 800
Sse9I AATT 9 cut(s) 126, 408, 546, 628, 640, 772, 917, 989, 1089
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 3 cut(s) 96, 120, 123
SspI AATATT 1 cut(s) 1006
SspMI CTAG 5 cut(s) 453, 599, 695, 744, 801
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 313, 1116
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 1 cut(s) 1031
TaiI ACGT 1 cut(s) 957
TaqI TCGA 1 cut(s) 387
TaqII GACCGA 1 cut(s) 449
TasI AATT 9 cut(s) 126, 408, 546, 628, 640, 772, 917, 989, 1089
TatI WGTACW 4 cut(s) 81, 449, 486, 860
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 109, 384, 760, 821
Tru1I TTAA 4 cut(s) 35, 359, 627, 740
Tru9I TTAA 4 cut(s) 35, 359, 627, 740
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 2 cut(s) 394, 955
TseI GCWGC 8 cut(s) 180, 370, 443, 617, 620, 672, 883, 938
Tsp45I GTSAC 2 cut(s) 394, 955
TspDTI ATGAA 7 cut(s) 39, 81, 579, 773, 860, 1029, 1113
TspRI CASTG 1 cut(s) 565
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 4 cut(s) 291, 461, 563, 685
XceI RCATGY 1 cut(s) 18
XspI CTAG 5 cut(s) 453, 599, 695, 744, 801
ZrmI AGTACT 2 cut(s) 488, 862
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.