FvH4_7g34190

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013956
Physical Location & Seq
Reverse (-)
24129155 .. 24131491
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34190.t1

Sequence Viewer

Length: 399 bp
ATGGAGGGCAGTGGCAGTGGCTGTGGTAGTACCACCCCCGACCAAAACAACAAGGATTACTACCGAATTTTGGAGGTTGATTATGATGCAACTGATGAGAACATCAGGCTAAATTACCGAAGACTTGCTCTGAAGTGGCATCCTGATAAGCACAACGGTGGCGCTCACGTTACAGCAAAGTTTCAAGAGATTAACGAAGCTTACGAAGTGTTGAGTGATCCTGCTAAGCGACTTGACTATGATCTAACTGGCATATGTGAGATTGATAAGTATACTTTACCGGAATATCTTGGCAGATTTAGAGGAATGATACTTACATGCAATGGCCTGGGTATTAGTCATGCATCAACACGGCCACAATTGGTGGAAACCGATGTATTAGCAGAGAAATCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

5.14

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 19 - 81 6.9e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16650 AT5G16650
fragaria_vesca FvH4_7g34190 FvH4_7g34190 FvH4_7g34190
prunus_persica Prupe.2G328700_v2.0.a1 Prupe.2G328700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0384541
rosa_laevigata RLG00000026033
rosa_roxburghii Rroxscaffold_4G00276610
rosa_rugosa Rorug01G0448800 Rorug01G0448900
rosa_samantha Rh1AG473900 Rh1BG432000 Rh1CG445100 Rh1DG464500
rosa_wichuraiana Rw1G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 353
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 21
AoxI GGCC 2 cut(s) 325, 353
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 165
BlpI GCTNAGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 3 cut(s) 76, 148, 353
BpiI GAAGAC 1 cut(s) 127
Bpu1102I GCTNAGC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 253
BshFI GGCC 2 cut(s) 327, 355
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 70
BsnI GGCC 2 cut(s) 327, 355
Bsp143I GATC 2 cut(s) 217, 241
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 327, 355
BspPI GGATC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 217, 241
BssNAI GTATAC 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 220, 244
BstMBI GATC 2 cut(s) 217, 241
BstNI CCWGG 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 273
BsuRI GGCC 2 cut(s) 327, 355
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 2 cut(s) 16, 22
BtsIMutI CAGTG 2 cut(s) 16, 22
CaiI CAGNNNCTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 318, 341
CviJI RGCY 6 cut(s) 21, 109, 200, 327, 355, 395
CviKI_1 RGCY 6 cut(s) 21, 109, 200, 327, 355, 395
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 219, 243
DpnII GATC 2 cut(s) 217, 241
EaeI YGGCCR 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 346
FaeI CATG 2 cut(s) 321, 344
FaiI YATR 7 cut(s) 84, 240, 254, 256, 273, 319, 342
FatI CATG 2 cut(s) 317, 340
FauNDI CATATG 1 cut(s) 254
FblI GTMKAC 1 cut(s) 272
FokI GGATG 1 cut(s) 126
GlaI GCGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 2 cut(s) 327, 355
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 164
Hin1II CATG 2 cut(s) 321, 344
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 143, 185
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 89, 321, 344
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 321, 344
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 217, 241
LpnPI CCDG 7 cut(s) 91, 156, 234, 234, 294, 314, 341
LweI GCATC 3 cut(s) 76, 148, 353
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 219, 243
MboI GATC 2 cut(s) 217, 241
MboII GAAGA 1 cut(s) 132
MfeI CAATTG 1 cut(s) 359
MluCI AATT 3 cut(s) 66, 112, 359
MnlI CCTC 2 cut(s) 67, 296
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 254
NdeII GATC 2 cut(s) 217, 241
NlaIII CATG 2 cut(s) 321, 344
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 21
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 2 cut(s) 217, 241
ScrFI CCNGG 1 cut(s) 329
SetI ASST 3 cut(s) 78, 171, 202
SfaNI GCATC 3 cut(s) 76, 148, 353
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 66, 112, 359
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 171
TasI AATT 3 cut(s) 66, 112, 359
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 16, 22
TspRI CASTG 2 cut(s) 16, 22
XapI RAATTY 1 cut(s) 66
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.