Rorug01G0448800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013956
Physical Location & Seq
Forward (+)
54485009 .. 54489049
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0448800.1

Sequence Viewer

Length: 840 bp
ATGGCGGAGGTGGTGCTGCATATATACGATGTGACGAATAGTGGATCGGACAAGACGAACAGCACCATTATGCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGCGGCATCTTCCACAGCGCCGTTCAGGTTTATGGGGAAGATGAATGGTCATTTGGGTTCTGTGAACAAGGAAGTGGTGTTTTCAGTTGTCCATCAGGAAAAAATCCAATGTACACATATCGCGAAAGCATCGTCCTTGGAACAACAGATTGTTCAATCTTCAAGGTCAATCAAATCTTGAGGGAACTCAGTAGAGAGTGGCCTGGGTTTACTTATGACTTGTTATCAAAAAATTGCAATCACTTTTGTGATGAGCTATGCGAAAGACTTGGGGTGCCAAAGCTTCCAGGCTGGGTTAATCGCTTTGCACATGCGGGTGATGCTGCAATGGAAGTAGCAGGAAACACAGCAGTACGGTTTAAACAAGCCAAGACAGAGATTGTATCGGCGAGCAAAGTTGCTTATCGTTTCCTTGTTGGCGTCACTAACAATGTCATAGCTTCTCCCGAAGCTTCTGGAAATTCAAATAGAGGGGCCCCTAGATTTCAATCAGCTTGGTTCAAAAACCTAATCCCTAATGGAGCCAAACCATCTAGTAGTTCTGAATTTGATAGTGAAGAGAATGCACTTCGGCAGCAACAGCAGACAGATTCAGACTTGCCGCTACCACGACATTCTCGACCATTGCAGCAGACAGATTCAGACTTGCCACTACCACAACATTCTCGACCATTGCAGCAGACAGATTCGGACTTGCCGCTACCACAACATTCTCGACCATTGCATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

279

Amino Acids

30.86

Weight (kDa)

6.06

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 147 3.1e-43 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16650 AT5G16650
fragaria_vesca FvH4_7g34190 FvH4_7g34190 FvH4_7g34190
prunus_persica Prupe.2G328700_v2.0.a1 Prupe.2G328700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0384541
rosa_laevigata RLG00000026033
rosa_roxburghii Rroxscaffold_4G00276610
rosa_rugosa Rorug01G0448800 Rorug01G0448900
rosa_samantha Rh1AG473900 Rh1BG432000 Rh1CG445100 Rh1DG464500
rosa_wichuraiana Rw1G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 231
AciI CCGC 5 cut(s) 5, 111, 422, 710, 806
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 2 cut(s) 568, 653
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 2 cut(s) 221, 462
AgsI TTSAA 6 cut(s) 91, 264, 271, 573, 596, 610
AjnI CCWGG 2 cut(s) 310, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 5 cut(s) 364, 391, 548, 560, 602
AluI AGCT 5 cut(s) 364, 391, 548, 560, 602
AlwI GGATC 1 cut(s) 52
AoxI GGCC 3 cut(s) 103, 308, 582
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 5 cut(s) 16, 431, 682, 736, 784
ApoI RAATTY 2 cut(s) 568, 653
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 582, 583
AsuHPI GGTGA 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 586
BbvI GCAGC 5 cut(s) 3, 418, 694, 748, 796
BccI CCATC 2 cut(s) 208, 646
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 312, 396
BfaI CTAG 2 cut(s) 588, 642
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 84
BisI GCNGC 8 cut(s) 17, 112, 432, 683, 710, 737, 785, 806
BlsI GCNGC 8 cut(s) 18, 113, 433, 684, 711, 738, 786, 807
Bme1390I CCNGG 2 cut(s) 312, 396
BmgT120I GGNCC 2 cut(s) 582, 583
BmiI GGNNCC 5 cut(s) 384, 583, 584, 585, 631
BmrFI CCNGG 2 cut(s) 312, 396
BmsI GCATC 3 cut(s) 123, 246, 418
BpuEI CTTGAG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 106, 244, 311
Bse3DI GCAATG 4 cut(s) 441, 731, 779, 827
Bse8I GATNNNNATC 1 cut(s) 595
BseBI CCWGG 2 cut(s) 312, 396
BseDI CCNNGG 3 cut(s) 106, 244, 311
BseJI GATNNNNATC 1 cut(s) 595
BseMI GCAATG 4 cut(s) 441, 731, 779, 827
BseMII CTCAG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 5 cut(s) 3, 418, 694, 748, 796
BseYI CCCAGC 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 105, 310, 584
BshNI GGYRCC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 3 cut(s) 105, 310, 584
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 44, 75, 84
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 5 cut(s) 5, 111, 422, 710, 806
BspANI GGCC 3 cut(s) 105, 310, 584
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 5 cut(s) 384, 583, 584, 585, 631
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 4 cut(s) 441, 731, 779, 827
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 106, 244, 311
BssMI GATC 3 cut(s) 44, 75, 84
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 2 cut(s) 312, 396
Bst4CI ACNGT 2 cut(s) 98, 465
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 47, 78, 87
BstMBI GATC 3 cut(s) 44, 75, 84
BstMWI GCNNNNNNNGC 3 cut(s) 111, 428, 688
BstNI CCWGG 2 cut(s) 312, 396
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 310, 394
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 3, 418, 694, 748, 796
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 3 cut(s) 105, 310, 584
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 499
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 582, 583
CseI GACGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 220, 461
CviAII CATG 1 cut(s) 419
CviQI GTAC 2 cut(s) 220, 461
DdeI CTNAG 1 cut(s) 296
DpnI GATC 3 cut(s) 46, 77, 86
DpnII GATC 3 cut(s) 44, 75, 84
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 586
EcoO109I RGGNCCY 2 cut(s) 582, 583
EcoRII CCWGG 2 cut(s) 310, 394
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 422
FatI CATG 1 cut(s) 418
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 8 cut(s) 17, 112, 432, 683, 710, 737, 785, 806
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 8 cut(s) 17, 112, 432, 683, 710, 737, 785, 806
FspBI CTAG 2 cut(s) 588, 642
GlaI GCGC 1 cut(s) 127
GluI GCNGC 8 cut(s) 17, 112, 432, 683, 710, 737, 785, 806
GsaI CCCAGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 105, 310, 584
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 389, 558
HinfI GANTC 3 cut(s) 698, 746, 794
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 318
Hpy188I TCNGA 5 cut(s) 49, 652, 703, 751, 799
Hpy188III TCNNGA 8 cut(s) 204, 230, 286, 554, 564, 726, 774, 822
Hpy8I GTNNAC 3 cut(s) 173, 222, 318
HpyCH4III ACNGT 2 cut(s) 98, 465
HpyCH4V TGCA 9 cut(s) 19, 73, 345, 416, 434, 674, 736, 784, 832
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 428, 688
HpyF3I CTNAG 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 44, 75, 84
LmnI GCTCC 1 cut(s) 629
LpnPI CCDG 9 cut(s) 119, 189, 297, 324, 381, 385, 408, 432, 549
Lsp1109I GCAGC 5 cut(s) 3, 418, 694, 748, 796
LweI GCATC 3 cut(s) 123, 246, 418
MaeI CTAG 2 cut(s) 588, 642
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 3 cut(s) 46, 77, 86
MboI GATC 3 cut(s) 44, 75, 84
MboII GAAGA 5 cut(s) 79, 109, 158, 259, 677
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 340, 568, 653
MnlI CCTC 3 cut(s) 116, 282, 572
MseI TTAA 2 cut(s) 405, 468
MslI CAYNNNNRTG 3 cut(s) 68, 354, 423
MspR9I CCNGG 2 cut(s) 312, 396
MssI GTTTAAAC 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 2 cut(s) 312, 396
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 111, 428, 688
NdeII GATC 3 cut(s) 44, 75, 84
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 5 cut(s) 384, 583, 584, 585, 631
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 31, 529
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 2 cut(s) 53, 724
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 3 cut(s) 698, 746, 794
PkrI GCNGC 8 cut(s) 18, 113, 433, 684, 711, 738, 786, 807
PmeI GTTTAAAC 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 310, 394
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 310, 394
PspN4I GGNNCC 5 cut(s) 384, 583, 584, 585, 631
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 2 cut(s) 582, 583
PsuI RGATCY 1 cut(s) 84
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 221, 462
RsaNI GTAC 2 cut(s) 220, 461
RseI CAYNNNNRTG 3 cut(s) 68, 354, 423
SaqAI TTAA 2 cut(s) 405, 468
SatI GCNGC 8 cut(s) 17, 112, 432, 683, 710, 737, 785, 806
Sau3AI GATC 3 cut(s) 44, 75, 84
Sau96I GGNCC 2 cut(s) 582, 583
ScrFI CCNGG 2 cut(s) 312, 396
SduI GDGCHC 1 cut(s) 586
SetI ASST 9 cut(s) 12, 138, 276, 366, 393, 550, 562, 604, 618
SfaNI GCATC 3 cut(s) 123, 246, 418
SmiMI CAYNNNNRTG 3 cut(s) 68, 354, 423
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 340, 568, 653
SsiI CCGC 5 cut(s) 5, 111, 422, 710, 806
SspMI CTAG 2 cut(s) 588, 642
StyD4I CCNGG 2 cut(s) 310, 394
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 98, 465
TaqI TCGA 3 cut(s) 727, 775, 823
TasI AATT 3 cut(s) 340, 568, 653
TatI WGTACW 1 cut(s) 219
TauI GCSGC 3 cut(s) 114, 712, 808
TfiI GAWTC 3 cut(s) 698, 746, 794
Tru1I TTAA 2 cut(s) 405, 468
Tru9I TTAA 2 cut(s) 405, 468
TseFI GTSAC 2 cut(s) 31, 529
TseI GCWGC 5 cut(s) 16, 431, 682, 736, 784
Tsp45I GTSAC 2 cut(s) 31, 529
TspDTI ATGAA 1 cut(s) 165
XapI RAATTY 2 cut(s) 568, 653
XceI RCATGY 1 cut(s) 422
XspI CTAG 2 cut(s) 588, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.