Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

54489781 .. 54492751

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0448900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATAAAATGGAGTGTAATAAAGTGCAACCTGTTATGAGAAAAGTTAAGAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAGGCTGAGAAAAAGAAGAGGCGCTTGGAGAAAGCTCTTGCTACTTCAGCTGCCATAATTTCGGAACTAGAAAAGAAAAAACAGAAGAAGAAGGAAGAGCAACAGAGGCTTGATGAAGAGGGTGCTGCAATTGCCGAGGCTGTTGCCCTGCATGTTCTATTGGACGAAGACTCTGATGAAAGGTGTGAAATTGTTTTGAACAAAGATGAAGTGCTCAAGTCCTGGGATTGTCCTGGTGATTTTGACTTGTTTATGGGTGGAGGAAGGGCTTGCTATCCTTATCAGGATTCTGCTAAGTGTTCACTTGAAGGAATGGGGTGGGGATCTAATGGTTACAGATCAGGGTGCAAGTGGGGTGGTTTGGGGAACAATGAATGGTCGTTCTCAACTGGGCCTTATGGAAGGGATTACCGCCACCCTTCATTTTGCCAGGAAGCAGGTTGGGGGCAAACGGGATTTGCTGCTGGTCTTATTGCGGCACAGGCTGTTTCATCTCTCCAGATTGCAGAGGATTCACATGAAGGCACAATTGTGCTTGATGGTATGCTAAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

214

Amino Acids

23.9

Weight (kDa)

6.36

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 515
AciI	CCGC	2 cut(s)	499, 563
AclWI	GGATC	2 cut(s)	84, 418
AcuI	CTGAAG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	286, 395
AjnI	CCWGG	3 cut(s)	308, 319, 516
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 95, 127
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	2 cut(s)	122, 137
AluI	AGCT	2 cut(s)	122, 137
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	84, 418
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	137, 212, 548
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	73, 335
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	124, 199, 535
BccI	CCATC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	3 cut(s)	310, 321, 518
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	2 cut(s)	49, 515
BisI	GCNGC	4 cut(s)	138, 213, 549, 564
BlsI	GCNGC	4 cut(s)	139, 214, 550, 565
Bme1390I	CCNGG	3 cut(s)	310, 321, 518
BmgT120I	GGNCC	1 cut(s)	479
BmrFI	CCNGG	3 cut(s)	310, 321, 518
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	222, 309
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	3 cut(s)	310, 321, 518
BseDI	CCNNGG	2 cut(s)	222, 309
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	124, 199, 535
BshFI	GGCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	76, 410, 425
BspACI	CCGC	2 cut(s)	499, 563
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	49, 515
BspPI	GGATC	2 cut(s)	84, 418
BspQI	GCTCTTC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	222, 309
BssMI	GATC	3 cut(s)	76, 410, 425
Bst2UI	CCWGG	3 cut(s)	310, 321, 518
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	3 cut(s)	98, 177, 198
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	93, 381, 635
BstF5I	GGATG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	79, 413, 428
BstMBI	GATC	3 cut(s)	76, 410, 425
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
BstNI	CCWGG	3 cut(s)	310, 321, 518
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	308, 319, 516
BstV1I	GCAGC	3 cut(s)	124, 199, 535
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	73
BveI	ACCTGC	2 cut(s)	49, 515
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	2 cut(s)	239, 605
CviJI	RGCY	8 cut(s)	92, 122, 137, 196, 227, 356, 481, 572
CviKI_1	RGCY	8 cut(s)	92, 122, 137, 196, 227, 356, 481, 572
DdeI	CTNAG	3 cut(s)	93, 381, 635
DpnI	GATC	3 cut(s)	78, 412, 427
DpnII	GATC	3 cut(s)	76, 410, 425
Eam1104I	CTCTTC	3 cut(s)	98, 177, 198
EarI	CTCTTC	3 cut(s)	98, 177, 198
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	3 cut(s)	308, 319, 516
FaeI	CATG	2 cut(s)	242, 608
FaiI	YATR	7 cut(s)	38, 143, 240, 341, 486, 606, 632
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	238, 604
Fnu4HI	GCNGC	4 cut(s)	138, 213, 549, 564
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	138, 213, 549, 564
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	138, 213, 549, 564
GsuI	CTGGAG	1 cut(s)	569
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	242, 608
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	257, 374, 599
HphI	GGTGA	2 cut(s)	73, 335
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	84, 151, 262
Hpy188III	TCNNGA	2 cut(s)	371, 586
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	7 cut(s)	58, 172, 345, 389, 483, 516, 602
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	5 cut(s)	28, 215, 238, 435, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
HpyF3I	CTNAG	3 cut(s)	93, 381, 635
Hsp92II	CATG	2 cut(s)	242, 608
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	76, 410, 425
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	124, 199, 535
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	78, 412, 427
MboI	GATC	3 cut(s)	76, 410, 425
MboII	GAAGA	7 cut(s)	64, 115, 184, 187, 194, 215, 266
MfeI	CAATTG	2 cut(s)	216, 615
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	4 cut(s)	144, 216, 276, 615
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	99, 186, 199, 217, 341, 589
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	310, 321, 518
MunI	CAATTG	2 cut(s)	216, 615
MvaI	CCWGG	3 cut(s)	310, 321, 518
MwoI	GCNNNNNNNGC	4 cut(s)	134, 193, 218, 569
NdeII	GATC	3 cut(s)	76, 410, 425
NlaIII	CATG	2 cut(s)	242, 608
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	374, 599
PkrI	GCNGC	4 cut(s)	139, 214, 550, 565
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	308, 319, 516
PspGI	CCWGG	3 cut(s)	308, 319, 516
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	4 cut(s)	138, 213, 549, 564
Sau3AI	GATC	3 cut(s)	76, 410, 425
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	310, 321, 518
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	6 cut(s)	34, 63, 124, 139, 272, 529
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	144, 216, 276, 615
SsiI	CCGC	2 cut(s)	499, 563
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	308, 319, 516
TaaI	ACNGT	1 cut(s)	642
TasI	AATT	4 cut(s)	144, 216, 276, 615
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	374, 599
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	3 cut(s)	137, 212, 548
TspDTI	ATGAA	7 cut(s)	216, 279, 309, 474, 498, 567, 621
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.