Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

2709441 .. 2722112

Gene Structure 12672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGAGACAATCTAAATCTGCTGCTACTAGTTTCGATGCTAATCCGAAATCAACTTCTTCATCTCAGCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAAAGCGTCGGAGAAGAAGTAAACGCTGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATCTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTTACCTGGAGCGGTCTAATGCTCGATGGAACTTCAAGAATGTCGACTGTCAAGGGACAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTGCTCATCGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATATGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCAAGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTGTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGAAGCCACAAAAATGGGTAAAGGAACAGCAGTTGTGCTAGGAGGCTCAGGTGTAACAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAATTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACAAAGCACTTGAATTCTTAAAGCAGCCAGATTGTGTGAAGGTTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.78

Weight (kDa)

6.32

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	24 - 129	5.7e-14	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	177 - 308	2.7e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccBSI	CCGCTC	2 cut(s)	258, 879
AccI	GTMKAC	2 cut(s)	290, 591
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	258, 879
AcsI	RAATTY	1 cut(s)	1028
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	317, 350, 406, 721
AfiI	CCNNNNNNNGG	3 cut(s)	391, 465, 894
AgsI	TTSAA	7 cut(s)	151, 282, 494, 791, 854, 892, 1028
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	5 cut(s)	382, 435, 485, 626, 706
AluI	AGCT	5 cut(s)	382, 435, 485, 626, 706
Alw21I	GWGCWC	2 cut(s)	400, 758
Alw26I	GTCTC	2 cut(s)	153, 917
Alw44I	GTGCAC	1 cut(s)	754
ApaLI	GTGCAC	1 cut(s)	754
ApeKI	GCWGC	2 cut(s)	23, 1039
ApoI	RAATTY	1 cut(s)	1028
AspS9I	GGNCC	2 cut(s)	342, 897
AsuHPI	GGTGA	1 cut(s)	653
AsuNHI	GCTAGC	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	342, 897
BaeGI	GKGCMC	1 cut(s)	758
BaeI	ACNNNNGTAYC	4 cut(s)	161, 161, 194, 194
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	400, 758
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	10, 1051
BccI	CCATC	2 cut(s)	266, 719
BciT130I	CCWGG	1 cut(s)	253
BclI	TGATCA	2 cut(s)	676, 1062
BcoDI	GTCTC	2 cut(s)	153, 917
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	5 cut(s)	30, 432, 558, 576, 827
BisI	GCNGC	3 cut(s)	24, 880, 1040
BlsI	GCNGC	3 cut(s)	25, 881, 1041
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	342, 897
BmgT120I	GGNCC	2 cut(s)	342, 897
BmiI	GGNNCC	3 cut(s)	471, 898, 899
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	4 cut(s)	28, 300, 581, 776
BmtI	GCTAGC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	2 cut(s)	141, 835
BsaBI	GATNNNNATC	2 cut(s)	42, 681
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 150, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 465, 894
Bse1I	ACTGG	1 cut(s)	763
Bse8I	GATNNNNATC	2 cut(s)	42, 681
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	2 cut(s)	767, 982
BseJI	GATNNNNATC	2 cut(s)	42, 681
BseLI	CCNNNNNNNGG	3 cut(s)	391, 465, 894
BseMII	CTCAG	3 cut(s)	80, 132, 849
BseNI	ACTGG	1 cut(s)	763
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	10, 1051
Bsh1236I	CGCG	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	400, 758
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	3 cut(s)	315, 409, 883
BslI	CCNNNNNNNGG	3 cut(s)	391, 465, 894
BsmAI	GTCTC	2 cut(s)	153, 917
BsmFI	GGGAC	3 cut(s)	315, 409, 883
BsmI	GAATGC	3 cut(s)	194, 203, 567
Bso31I	GGTCTC	1 cut(s)	917
Bsp1286I	GDGCHC	3 cut(s)	400, 472, 758
Bsp1407I	TGTACA	1 cut(s)	719
Bsp143I	GATC	3 cut(s)	676, 682, 1062
BspACI	CCGC	2 cut(s)	258, 879
BspCNI	CTCAG	3 cut(s)	79, 133, 848
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	2 cut(s)	685, 991
BspLI	GGNNCC	3 cut(s)	471, 898, 899
BspOI	GCTAGC	1 cut(s)	435
BspTNI	GGTCTC	1 cut(s)	917
BsrBI	CCGCTC	2 cut(s)	258, 879
BsrGI	TGTACA	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	676, 682, 1062
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	4 cut(s)	295, 508, 719, 850
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	5 cut(s)	66, 141, 486, 702, 835
BstF5I	GGATG	2 cut(s)	767, 982
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	679, 685, 1065
BstMAI	GTCTC	2 cut(s)	153, 917
BstMBI	GATC	3 cut(s)	676, 682, 1062
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 753, 791
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	10, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	767, 982
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	2 cut(s)	685, 991
Cfr13I	GGNCC	2 cut(s)	342, 897
CseI	GACGC	2 cut(s)	91, 109
Csp6I	GTAC	4 cut(s)	316, 349, 405, 720
CviAII	CATG	8 cut(s)	95, 339, 352, 444, 674, 686, 955, 992
CviQI	GTAC	4 cut(s)	316, 349, 405, 720
DdeI	CTNAG	5 cut(s)	66, 141, 486, 702, 835
DpnI	GATC	3 cut(s)	678, 684, 1064
DpnII	GATC	3 cut(s)	676, 682, 1062
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	917
Eco47I	GGWCC	2 cut(s)	342, 897
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	956
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	8 cut(s)	98, 342, 355, 447, 677, 689, 958, 995
FaqI	GGGAC	3 cut(s)	315, 409, 883
FatI	CATG	8 cut(s)	94, 338, 351, 443, 673, 685, 954, 991
FbaI	TGATCA	2 cut(s)	676, 1062
FblI	GTMKAC	2 cut(s)	290, 591
Fnu4HI	GCNGC	3 cut(s)	24, 880, 1040
FokI	GGATG	2 cut(s)	754, 989
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	24, 880, 1040
FspBI	CTAG	5 cut(s)	30, 432, 558, 576, 827
GluI	GCNGC	3 cut(s)	24, 880, 1040
GsuI	CTGGAG	1 cut(s)	274
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	2 cut(s)	91, 109
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	8 cut(s)	98, 342, 355, 447, 677, 689, 958, 995
HincII	GTYRAC	4 cut(s)	291, 361, 504, 592
HindII	GTYRAC	4 cut(s)	291, 361, 504, 592
HinfI	GANTC	2 cut(s)	450, 988
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	7 cut(s)	136, 249, 291, 361, 504, 592, 756
Hpy188I	TCNGA	6 cut(s)	48, 125, 187, 346, 670, 1062
Hpy188III	TCNNGA	7 cut(s)	166, 282, 680, 686, 985, 992, 1066
Hpy8I	GTNNAC	7 cut(s)	136, 249, 291, 361, 504, 592, 756
Hpy99I	CGWCG	2 cut(s)	107, 125
HpyAV	CCTTC	4 cut(s)	472, 781, 941, 1048
HpyCH4III	ACNGT	4 cut(s)	295, 508, 719, 850
HpyCH4IV	ACGT	2 cut(s)	176, 363
HpyCH4V	TGCA	6 cut(s)	565, 572, 756, 767, 954, 970
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 753, 791
HpyF3I	CTNAG	5 cut(s)	66, 141, 486, 702, 835
HpySE526I	ACGT	2 cut(s)	176, 363
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	8 cut(s)	98, 342, 355, 447, 677, 689, 958, 995
KflI	GGGWCCC	1 cut(s)	897
Ksp22I	TGATCA	2 cut(s)	676, 1062
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	676, 682, 1062
LmnI	GCTCC	4 cut(s)	255, 338, 387, 475
Lsp1109I	GCAGC	2 cut(s)	10, 1051
LweI	GCATC	4 cut(s)	28, 300, 581, 776
MaeI	CTAG	5 cut(s)	30, 432, 558, 576, 827
MaeII	ACGT	2 cut(s)	176, 363
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	678, 684, 1064
MbiI	CCGCTC	2 cut(s)	258, 879
MboI	GATC	3 cut(s)	676, 682, 1062
MboII	GAAGA	3 cut(s)	16, 51, 140
MfeI	CAATTG	1 cut(s)	971
MhlI	GDGCHC	3 cut(s)	400, 472, 758
MluCI	AATT	5 cut(s)	205, 367, 855, 971, 1028
MlyI	GAGTC	1 cut(s)	982
MmeI	TCCRAC	3 cut(s)	103, 249, 514
Mph1103I	ATGCAT	1 cut(s)	956
MseI	TTAA	3 cut(s)	360, 1014, 1034
MslI	CAYNNNNRTG	2 cut(s)	800, 959
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	3 cut(s)	194, 203, 567
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	198, 207, 216, 753, 791
NdeII	GATC	3 cut(s)	676, 682, 1062
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	8 cut(s)	98, 342, 355, 447, 677, 689, 958, 995
NlaIV	GGNNCC	3 cut(s)	471, 898, 899
NsiI	ATGCAT	1 cut(s)	956
PagI	TCATGA	2 cut(s)	685, 991
PctI	GAATGC	3 cut(s)	194, 203, 567
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	25, 881, 1041
PleI	GAGTC	1 cut(s)	982
PpsI	GAGTC	1 cut(s)	982
PpuMI	RGGWCCY	1 cut(s)	897
PsiI	TTATAA	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	471, 898, 899
PspPI	GGNCC	2 cut(s)	342, 897
PspPPI	RGGWCCY	1 cut(s)	897
PsrI	GAACNNNNNNTAC	2 cut(s)	834, 866
RsaI	GTAC	4 cut(s)	317, 350, 406, 721
RsaNI	GTAC	4 cut(s)	316, 349, 405, 720
RseI	CAYNNNNRTG	2 cut(s)	800, 959
SalI	GTCGAC	2 cut(s)	289, 590
SaqAI	TTAA	3 cut(s)	360, 1014, 1034
SatI	GCNGC	3 cut(s)	24, 880, 1040
Sau3AI	GATC	3 cut(s)	676, 682, 1062
Sau96I	GGNCC	2 cut(s)	342, 897
SchI	GAGTC	1 cut(s)	982
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	3 cut(s)	400, 472, 758
SfaNI	GCATC	4 cut(s)	28, 300, 581, 776
SinI	GGWCC	2 cut(s)	342, 897
SmiMI	CAYNNNNRTG	2 cut(s)	800, 959
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	5 cut(s)	205, 367, 855, 971, 1028
SsiI	CCGC	2 cut(s)	258, 879
SspMI	CTAG	5 cut(s)	30, 432, 558, 576, 827
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	4 cut(s)	295, 508, 719, 850
TaiI	ACGT	2 cut(s)	179, 366
TaqI	TCGA	4 cut(s)	36, 270, 290, 591
TasI	AATT	5 cut(s)	205, 367, 855, 971, 1028
TatI	WGTACW	2 cut(s)	348, 719
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	3 cut(s)	360, 1014, 1034
Tru9I	TTAA	3 cut(s)	360, 1014, 1034
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	2 cut(s)	23, 1039
TspDTI	ATGAA	8 cut(s)	17, 51, 620, 763, 795, 971, 993, 1008
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	763
VneI	GTGCAC	1 cut(s)	754
VpaK11BI	GGWCC	2 cut(s)	342, 897
XapI	RAATTY	1 cut(s)	1028
XmiI	GTMKAC	2 cut(s)	290, 591
XspI	CTAG	5 cut(s)	30, 432, 558, 576, 827
Zsp2I	ATGCAT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.