Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Forward (+)

21470963 .. 21473252

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCATCAATATCAGAGAGGAGCCGCACATCACAAGTCATAACATGCAAAGCGGTGGTATGCTGGGGAGTAGGAAAAGCATGGAAGGTGGAAGAGATAGAGGTAGAGCCTCCAAAGAGGGCTGAAGTTCGGGTGAAGATGCTCTATGCCAGTTTCTGTCACACTGATATCTTGATCTCCAAAGGACACCCAATTCCTCTCTTCCCTCGAGTTCTTGGTCACGAAGGCGTTGGTGTGGTGGAGAGCATCGGGGAGGATGTAAGAAACATAAACGGAGGAGACGTGGTGATTCCAACGTTTGTCTCAGAGTGCGAAGAATGCGAGAATTGCGTGTCGGGAAAGACAAACATGTGCCTGAAAAATCCCTTATCCTTCAGCGGTCTAATGCCGGATGGCACTTCGAGAATGTCCGTTGCCGGACAAAAGCTCTACCACCTCTTTTCTTGCTCCACATTGTCCGAGTACATGGTGGTTAATGTTAACTACCTCCTCAAGCTTCCTGGTATTAGTACGACGAGTCCTAGTCTCCCCCACGCAAGCTTCCTCTCGTGCGGATTTTCTACTGGATTTGGGGCTCCTTGGAAGGAAGCAAAGCTTGAAAAGGGATCAACCGTCGCCGTCGTTGGTCTTGGTGCTGTTGGATTAGGGGCCGTTGAGGGGGCTAGAGCGCAAGGTGCGGGTAGGATCATTGGCATCGACAAAAATGAGAGGAAAAGAGGAAAAGGAGAAGCATTCGGAATGACTGATTTTATAAACCCCGACGATGACGATGATCATAAATCGGTTTCTGAGCTGATCAAACACTCAACAGCCGGAATGGGTGTTGATTATTGCTTCGAGTGCACTGGCTTTGCCCCCTTCATCAATGAAGCGCTTGAAGCCACAAAATTGGGAACAGGAACGGCAATAGTGATTGGAACCTCGACTGCAACAAGCTTTCAAATTAATTCCCTTCCCCTATTGTGTGGACGAACCTTGAAAGGCTCCATATTTGGAGGGCTCAAACCGAAGACCGACCTTCCCGTTATAATCGACAAATGGATGAACAAGGATATGCAGCTCGACGAACTTTTGACTCATGAAGTTCCTCTGCTAGACATAAACCAAGCACTCGAGCTTTTGAGGCATCCTGATTGCGTCAAGGTTCTTATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

387

Amino Acids

41.55

Weight (kDa)

6.03

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	752, 1028
AciI	CCGC	5 cut(s)	25, 53, 378, 552, 677
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	2 cut(s)	613, 692
AcuI	CTGAAG	2 cut(s)	144, 358
AfaI	GTAC	2 cut(s)	464, 511
AfeI	AGCGCT	1 cut(s)	873
AfiI	CCNNNNNNNGG	1 cut(s)	657
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	4 cut(s)	599, 878, 941, 979
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	8 cut(s)	427, 496, 540, 595, 793, 936, 1060, 1117
AluI	AGCT	8 cut(s)	427, 496, 540, 595, 793, 936, 1060, 1117
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	3 cut(s)	273, 307, 530
Alw44I	GTGCAC	1 cut(s)	841
AlwI	GGATC	2 cut(s)	613, 692
AlwNI	CAGNNNCTG	1 cut(s)	156
Ama87I	CYCGRG	2 cut(s)	207, 1112
Aor51HI	AGCGCT	1 cut(s)	873
AoxI	GGCC	1 cut(s)	648
ApaLI	GTGCAC	1 cut(s)	841
ApeKI	GCWGC	1 cut(s)	1057
AseI	ATTAAT	1 cut(s)	945
AspLEI	GCGC	2 cut(s)	670, 874
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	145, 298
AvaI	CYCGRG	2 cut(s)	207, 1112
BaeGI	GKGCMC	1 cut(s)	845
BanII	GRGCYC	2 cut(s)	577, 1002
BauI	CACGAG	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	1016
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	1 cut(s)	1069
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	3 cut(s)	602, 635, 918
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	2 cut(s)	772, 795
BcoDI	GTCTC	3 cut(s)	273, 307, 530
BfaI	CTAG	3 cut(s)	522, 663, 1094
BfoI	RGCGCY	1 cut(s)	875
BisI	GCNGC	2 cut(s)	25, 1058
BlsI	GCNGC	2 cut(s)	26, 1059
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	2 cut(s)	207, 1112
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	5 cut(s)	23, 576, 649, 919, 985
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	4 cut(s)	129, 255, 702, 1135
BpiI	GAAGAC	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	578
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 270, 297, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse1I	ACTGG	3 cut(s)	150, 568, 850
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	4 cut(s)	262, 397, 1047, 1126
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	318, 780
BseNI	ACTGG	3 cut(s)	150, 568, 850
BseRI	GAGGAG	3 cut(s)	34, 291, 479
BseSI	GKGCMC	1 cut(s)	845
BseXI	GCAGC	1 cut(s)	1069
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	845
BsiHKCI	CYCGRG	2 cut(s)	207, 1112
BsiSI	CCGG	3 cut(s)	389, 417, 813
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmAI	GTCTC	3 cut(s)	273, 307, 530
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	2 cut(s)	323, 731
BsnI	GGCC	1 cut(s)	650
BsoBI	CYCGRG	2 cut(s)	207, 1112
Bsp1286I	GDGCHC	3 cut(s)	577, 845, 1002
Bsp143I	GATC	5 cut(s)	174, 605, 684, 772, 795
BspACI	CCGC	5 cut(s)	25, 53, 378, 552, 677
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	2 cut(s)	317, 781
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	5 cut(s)	23, 576, 649, 919, 985
BspPI	GGATC	2 cut(s)	613, 692
BsrI	ACTGG	3 cut(s)	150, 568, 850
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	5 cut(s)	174, 605, 684, 772, 795
BssSI	CACGAG	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	87, 206
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	304, 789
BstF5I	GGATG	4 cut(s)	262, 397, 1047, 1126
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	2 cut(s)	670, 874
BstKTI	GATC	5 cut(s)	177, 608, 687, 775, 798
BstMAI	GTCTC	3 cut(s)	273, 307, 530
BstMBI	GATC	5 cut(s)	174, 605, 684, 772, 795
BstMWI	GCNNNNNNNGC	6 cut(s)	318, 327, 674, 840, 878, 1123
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	2 cut(s)	48, 352
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	1069
BstV2I	GAAGAC	1 cut(s)	1016
BstXI	CCANNNNNNTGG	1 cut(s)	889
BsuRI	GGCC	1 cut(s)	650
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	262, 397, 1047, 1126
BtsIMutI	CAGTG	2 cut(s)	162, 843
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	156
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	2 cut(s)	670, 874
Cfr13I	GGNCC	1 cut(s)	648
CseI	GACGC	1 cut(s)	1126
Csp6I	GTAC	2 cut(s)	463, 510
CviAII	CATG	5 cut(s)	45, 81, 349, 466, 1079
CviQI	GTAC	2 cut(s)	463, 510
DdeI	CTNAG	2 cut(s)	304, 789
DpnI	GATC	5 cut(s)	176, 607, 686, 774, 797
DpnII	GATC	5 cut(s)	174, 605, 684, 772, 795
Eam1104I	CTCTTC	2 cut(s)	87, 206
EarI	CTCTTC	2 cut(s)	87, 206
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	2 cut(s)	577, 1002
Eco32I	GATATC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	873
Eco57I	CTGAAG	2 cut(s)	144, 358
Eco88I	CYCGRG	2 cut(s)	207, 1112
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	2 cut(s)	577, 1002
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	5 cut(s)	48, 84, 352, 469, 1082
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	5 cut(s)	44, 80, 348, 465, 1078
FauI	CCCGC	1 cut(s)	670
FbaI	TGATCA	2 cut(s)	772, 795
Fnu4HI	GCNGC	2 cut(s)	25, 1058
FokI	GGATG	4 cut(s)	269, 404, 1054, 1113
FriOI	GRGCYC	2 cut(s)	577, 1002
Fsp4HI	GCNGC	2 cut(s)	25, 1058
FspBI	CTAG	3 cut(s)	522, 663, 1094
GlaI	GCGC	2 cut(s)	669, 873
GluI	GCNGC	2 cut(s)	25, 1058
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	3 cut(s)	389, 417, 813
HgaI	GACGC	1 cut(s)	1126
HhaI	GCGC	2 cut(s)	670, 874
Hin1II	CATG	5 cut(s)	48, 84, 352, 469, 1082
Hin6I	GCGC	2 cut(s)	668, 872
HinP1I	GCGC	2 cut(s)	668, 872
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	4 cut(s)	494, 538, 593, 934
HinfI	GANTC	3 cut(s)	289, 517, 1075
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	3 cut(s)	389, 417, 813
HphI	GGTGA	2 cut(s)	145, 298
Hpy166II	GTNNAC	3 cut(s)	481, 843, 968
Hpy188I	TCNGA	5 cut(s)	16, 307, 460, 737, 790
Hpy188III	TCNNGA	7 cut(s)	172, 221, 336, 402, 1079, 1130, 1153
Hpy8I	GTNNAC	3 cut(s)	481, 843, 968
Hpy99I	CGWCG	5 cut(s)	517, 617, 623, 764, 1067
HpyAV	CCTTC	7 cut(s)	79, 218, 382, 577, 868, 962, 1028
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	282, 296
HpyCH4V	TGCA	4 cut(s)	48, 843, 929, 1057
HpyF10VI	GCNNNNNNNGC	6 cut(s)	318, 327, 674, 840, 878, 1123
HpyF3I	CTNAG	2 cut(s)	304, 789
HpySE526I	ACGT	2 cut(s)	282, 296
Hsp92II	CATG	5 cut(s)	48, 84, 352, 469, 1082
HspAI	GCGC	2 cut(s)	668, 872
Ksp22I	TGATCA	2 cut(s)	772, 795
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	174, 605, 684, 772, 795
LmnI	GCTCC	4 cut(s)	21, 452, 580, 989
Lsp1109I	GCAGC	1 cut(s)	1069
LweI	GCATC	4 cut(s)	129, 255, 702, 1135
MaeI	CTAG	3 cut(s)	522, 663, 1094
MaeII	ACGT	2 cut(s)	282, 296
MaeIII	GTNAC	2 cut(s)	158, 218
MalI	GATC	5 cut(s)	176, 607, 686, 774, 797
MboI	GATC	5 cut(s)	174, 605, 684, 772, 795
MboII	GAAGA	5 cut(s)	104, 148, 193, 326, 1021
MhlI	GDGCHC	3 cut(s)	577, 845, 1002
MluCI	AATT	5 cut(s)	192, 325, 887, 942, 946
MlyI	GAGTC	2 cut(s)	526, 1069
MmeI	TCCRAC	2 cut(s)	317, 619
MseI	TTAA	3 cut(s)	474, 480, 945
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	3 cut(s)	389, 417, 813
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	2 cut(s)	323, 731
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	6 cut(s)	318, 327, 674, 840, 878, 1123
NdeII	GATC	5 cut(s)	174, 605, 684, 772, 795
NlaIII	CATG	5 cut(s)	48, 84, 352, 469, 1082
NlaIV	GGNNCC	5 cut(s)	23, 576, 649, 919, 985
NmuCI	GTSAC	2 cut(s)	158, 218
NspI	RCATGY	2 cut(s)	48, 352
PaeR7I	CTCGAG	2 cut(s)	207, 1112
PagI	TCATGA	1 cut(s)	1078
PciI	ACATGT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	2 cut(s)	323, 731
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	26, 1059
PleI	GAGTC	2 cut(s)	525, 1069
PpsI	GAGTC	2 cut(s)	525, 1069
PscI	ACATGT	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	945
PsiI	TTATAA	2 cut(s)	752, 1028
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	5 cut(s)	23, 576, 649, 919, 985
PspPI	GGNCC	1 cut(s)	648
PspXI	VCTCGAGB	2 cut(s)	207, 1112
PstNI	CAGNNNCTG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	464, 511
RsaNI	GTAC	2 cut(s)	463, 510
SaqAI	TTAA	3 cut(s)	474, 480, 945
SatI	GCNGC	2 cut(s)	25, 1058
Sau3AI	GATC	5 cut(s)	174, 605, 684, 772, 795
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	2 cut(s)	526, 1069
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	3 cut(s)	577, 845, 1002
SfaNI	GCATC	4 cut(s)	129, 255, 702, 1135
Sfr274I	CTCGAG	2 cut(s)	207, 1112
SlaI	CTCGAG	2 cut(s)	207, 1112
SmlI	CTYRAG	3 cut(s)	207, 491, 1112
SmoI	CTYRAG	3 cut(s)	207, 491, 1112
Sse9I	AATT	5 cut(s)	192, 325, 887, 942, 946
SsiI	CCGC	5 cut(s)	25, 53, 378, 552, 677
SspMI	CTAG	3 cut(s)	522, 663, 1094
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	285, 299
TaqI	TCGA	8 cut(s)	208, 401, 696, 837, 923, 1032, 1062, 1113
TaqII	GACCGA	1 cut(s)	1028
TasI	AATT	5 cut(s)	192, 325, 887, 942, 946
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	474, 480, 945
Tru9I	TTAA	3 cut(s)	474, 480, 945
TscAI	CASTG	2 cut(s)	169, 850
TseFI	GTSAC	2 cut(s)	158, 218
TseI	GCWGC	1 cut(s)	1057
Tsp45I	GTSAC	2 cut(s)	158, 218
TspDTI	ATGAA	4 cut(s)	850, 882, 1058, 1095
TspGWI	ACGGA	2 cut(s)	288, 400
TspRI	CASTG	2 cut(s)	169, 850
VneI	GTGCAC	1 cut(s)	841
VspI	ATTAAT	1 cut(s)	945
XceI	RCATGY	2 cut(s)	48, 352
XhoI	CTCGAG	2 cut(s)	207, 1112
XspI	CTAG	3 cut(s)	522, 663, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.