Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001983

Physical Location & Seq

Genomic Coordinates Reverse (-)

65523173 .. 65525455

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCCAAATTAACACTTGTCTTCGATCTCGTCGATCAGCTGGCCTCGAATGCCAGTTCATCAGATCTGATAATATGTATTTATACAGCGGCTGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAGGTAGAGCCACCACAGAAGTTTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCCTCATGTCCAAAGGACGCCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAGAGCGTCGGAGAAGAAGTAAACGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTATGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTCAGGCAAGTCCAACCTGTGCCTGAAATATCCATTCACCTTGAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGAGAAAAAGATGCTGTACCACCTCTTTTCTTGCTCCACATGGTCCGAGTACATGGTCGTTAACGTCAATTTCCTTGTCAAGCTCCACAAATGGGGTGCTCATCGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGGTCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCATCTAGGATAATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCAAGATCATGACAATTCAGTTTCTAAGCTCATCAAAGACTGTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCAGTTGTACTAGGAAGCTCAGGTGTAACAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTGGATATTAACAAAGCACTTGAACTCTTAAAGCAGCCAGATTGTGTGAAGGTTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

411

Amino Acids

44.76

Weight (kDa)

5.64

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	54 - 183	1.1e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	231 - 362	1.7e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22430 AT1G22440 AT4G22110 AT4G22110 AT4G22110
fragaria_vesca	FvH4_7g34200 FvH4_7g34200 FvH4_7g34200
malus_domestica	MD01G1238700.v1.1
prunus_persica	Prupe.2G328800_v2.0.a1
pyrus_communis	pycom01g24620
rosa_chinensis	RchiOBHm_Chr1g0315691 RchiOBHm_Chr1g0384561
rosa_laevigata	RLG00000026032 RLG00000030737 RLG00000030739
rosa_multiflora	Rmu_co8484511.1_g000001 Rmu_sc0004180.1_g000010 Rmu_sc0006005.1_g000011
rosa_roxburghii	Rroxscaffold_4G00276590 Rroxscaffold_4G00318470 Rroxscaffold_4G00331540
rosa_rugosa	Rorug01G0004700 Rorug01G0066000 Rorug01G0066000 Rorug01G0448900 Rorug01G0449000 Rorug04G0062000 Rorug04G0062100 Rorug04G0062200 RorugMtG0004000.1
rosa_samantha	Rh1AG015900 Rh1AG474000 Rh1BG008400 Rh1BG432100 Rh1CG013400 Rh1CG445300 Rh1DG009100 Rh1DG464700
rosa_wichuraiana	Rw1G000930 Rw1G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
AccBSI	CCGCTC	2 cut(s)	420, 1041
AccI	GTMKAC	2 cut(s)	452, 753
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	89, 420, 1041
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	223, 264
AfaI	GTAC	6 cut(s)	439, 479, 512, 568, 883, 987
AfiI	CCNNNNNNNGG	3 cut(s)	553, 627, 1056
AgsI	TTSAA	7 cut(s)	161, 313, 444, 656, 1016, 1054, 1190
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	7 cut(s)	40, 544, 597, 647, 788, 868, 996
AluI	AGCT	7 cut(s)	40, 544, 597, 647, 788, 868, 996
Alw21I	GWGCWC	2 cut(s)	562, 920
Alw26I	GTCTC	3 cut(s)	194, 315, 1079
Alw44I	GTGCAC	1 cut(s)	916
AlwNI	CAGNNNCTG	2 cut(s)	92, 192
AoxI	GGCC	2 cut(s)	3, 42
ApaLI	GTGCAC	1 cut(s)	916
ApeKI	GCWGC	1 cut(s)	1201
AspS9I	GGNCC	2 cut(s)	504, 1059
AsuHPI	GGTGA	2 cut(s)	403, 815
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	2 cut(s)	504, 1059
BaeGI	GKGCMC	1 cut(s)	920
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	1166
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	562, 920
BbvI	GCAGC	1 cut(s)	1213
BccI	CCATC	2 cut(s)	428, 881
BclI	TGATCA	2 cut(s)	838, 1224
BcoDI	GTCTC	3 cut(s)	194, 315, 1079
BfaI	CTAG	4 cut(s)	594, 720, 738, 989
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	3 cut(s)	90, 1042, 1202
BlsI	GCNGC	3 cut(s)	91, 1043, 1203
Bme18I	GGWCC	2 cut(s)	504, 1059
BmgT120I	GGNCC	2 cut(s)	504, 1059
BmiI	GGNNCC	4 cut(s)	633, 955, 1060, 1061
BmsI	GCATC	4 cut(s)	165, 462, 743, 938
BmtI	GCTAGC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	997
BpuEI	CTTGAG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	843
BsaHI	GRCGYC	2 cut(s)	223, 264
BsaI	GGTCTC	1 cut(s)	1079
BsaJI	CCNNGG	2 cut(s)	635, 949
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 312, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	553, 627, 1056
Bse1I	ACTGG	4 cut(s)	54, 186, 925, 1140
Bse8I	GATNNNNATC	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	635, 949
BseGI	GGATG	3 cut(s)	204, 929, 1144
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	3 cut(s)	553, 627, 1056
BseMII	CTCAG	1 cut(s)	1011
BseNI	ACTGG	4 cut(s)	54, 186, 925, 1140
BseSI	GKGCMC	1 cut(s)	920
BseXI	GCAGC	1 cut(s)	1213
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	5, 44
BsiHKAI	GWGCWC	2 cut(s)	562, 920
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	2 cut(s)	571, 1045
BslI	CCNNNNNNNGG	3 cut(s)	553, 627, 1056
BsmAI	GTCTC	3 cut(s)	194, 315, 1079
BsmFI	GGGAC	2 cut(s)	571, 1045
BsmI	GAATGC	4 cut(s)	55, 356, 365, 729
BsnI	GGCC	2 cut(s)	5, 44
Bso31I	GGTCTC	1 cut(s)	1079
Bsp1286I	GDGCHC	3 cut(s)	562, 634, 920
Bsp1407I	TGTACA	1 cut(s)	881
Bsp143I	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
BspACI	CCGC	3 cut(s)	89, 420, 1041
BspANI	GGCC	2 cut(s)	5, 44
BspCNI	CTCAG	1 cut(s)	1010
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	2 cut(s)	847, 1153
BspLI	GGNNCC	4 cut(s)	633, 955, 1060, 1061
BspOI	GCTAGC	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	1079
BsrBI	CCGCTC	2 cut(s)	420, 1041
BsrGI	TGTACA	1 cut(s)	881
BsrI	ACTGG	4 cut(s)	54, 186, 925, 1140
BssECI	CCNNGG	2 cut(s)	635, 949
BssMI	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
BssNI	GRCGYC	2 cut(s)	223, 264
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	635, 949
Bst2BI	CACGAG	1 cut(s)	1166
Bst4CI	ACNGT	4 cut(s)	457, 670, 881, 1012
Bst6I	CTCTTC	2 cut(s)	108, 123
BstACI	GRCGYC	2 cut(s)	223, 264
BstAUI	TGTACA	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	42, 595
BstDEI	CTNAG	3 cut(s)	648, 864, 997
BstF5I	GGATG	3 cut(s)	204, 929, 1144
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	6 cut(s)	28, 37, 67, 841, 847, 1227
BstMAI	GTCTC	3 cut(s)	194, 315, 1079
BstMBI	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 360, 369, 378, 915, 953
BstSLI	GKGCMC	1 cut(s)	920
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	1213
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	5, 44
BtsCI	GGATG	3 cut(s)	204, 929, 1144
BtsIMutI	CAGTG	2 cut(s)	198, 918
Cac8I	GCNNGC	2 cut(s)	42, 595
CaiI	CAGNNNCTG	2 cut(s)	92, 192
CciI	TCATGA	2 cut(s)	847, 1153
Cfr13I	GGNCC	2 cut(s)	504, 1059
CseI	GACGC	3 cut(s)	231, 253, 271
Csp6I	GTAC	6 cut(s)	438, 478, 511, 567, 882, 986
CviAII	CATG	9 cut(s)	211, 257, 501, 514, 606, 836, 848, 1117, 1154
CviQI	GTAC	6 cut(s)	438, 478, 511, 567, 882, 986
DdeI	CTNAG	3 cut(s)	648, 864, 997
DpnI	GATC	6 cut(s)	27, 36, 66, 840, 846, 1226
DpnII	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	108, 123
EarI	CTCTTC	2 cut(s)	108, 123
Eco130I	CCWWGG	2 cut(s)	635, 949
Eco24I	GRGCYC	1 cut(s)	634
Eco31I	GGTCTC	1 cut(s)	1079
Eco47I	GGWCC	2 cut(s)	504, 1059
EcoO109I	RGGNCCY	1 cut(s)	1059
EcoT14I	CCWWGG	2 cut(s)	635, 949
EcoT22I	ATGCAT	1 cut(s)	1118
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	635, 949
FaeI	CATG	9 cut(s)	214, 260, 504, 517, 609, 839, 851, 1120, 1157
FaqI	GGGAC	2 cut(s)	571, 1045
FatI	CATG	9 cut(s)	210, 256, 500, 513, 605, 835, 847, 1116, 1153
FbaI	TGATCA	2 cut(s)	838, 1224
FblI	GTMKAC	2 cut(s)	452, 753
Fnu4HI	GCNGC	3 cut(s)	90, 1042, 1202
FokI	GGATG	3 cut(s)	191, 916, 1151
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	3 cut(s)	90, 1042, 1202
FspBI	CTAG	4 cut(s)	594, 720, 738, 989
GluI	GCNGC	3 cut(s)	90, 1042, 1202
HaeIII	GGCC	2 cut(s)	5, 44
HapII	CCGG	1 cut(s)	621
HgaI	GACGC	3 cut(s)	231, 253, 271
Hin1I	GRCGYC	2 cut(s)	223, 264
Hin1II	CATG	9 cut(s)	214, 260, 504, 517, 609, 839, 851, 1120, 1157
HincII	GTYRAC	4 cut(s)	453, 523, 666, 754
HindII	GTYRAC	4 cut(s)	453, 523, 666, 754
HinfI	GANTC	2 cut(s)	612, 1150
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	2 cut(s)	403, 815
Hpy166II	GTNNAC	6 cut(s)	298, 453, 523, 666, 754, 918
Hpy188I	TCNGA	7 cut(s)	64, 69, 287, 349, 508, 832, 1224
Hpy188III	TCNNGA	8 cut(s)	172, 328, 444, 842, 848, 1147, 1154, 1228
Hpy8I	GTNNAC	6 cut(s)	298, 453, 523, 666, 754, 918
Hpy99I	CGWCG	3 cut(s)	35, 269, 287
HpyAV	CCTTC	4 cut(s)	634, 943, 1103, 1210
HpyCH4III	ACNGT	4 cut(s)	457, 670, 881, 1012
HpyCH4IV	ACGT	2 cut(s)	338, 525
HpyCH4V	TGCA	7 cut(s)	120, 727, 734, 918, 929, 1116, 1132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 360, 369, 378, 915, 953
HpyF3I	CTNAG	3 cut(s)	648, 864, 997
HpySE526I	ACGT	2 cut(s)	338, 525
Hsp92I	GRCGYC	2 cut(s)	223, 264
Hsp92II	CATG	9 cut(s)	214, 260, 504, 517, 609, 839, 851, 1120, 1157
KflI	GGGWCCC	1 cut(s)	1059
Ksp22I	TGATCA	2 cut(s)	838, 1224
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
LmnI	GCTCC	4 cut(s)	500, 549, 637, 953
Lsp1109I	GCAGC	1 cut(s)	1213
LweI	GCATC	4 cut(s)	165, 462, 743, 938
MaeI	CTAG	4 cut(s)	594, 720, 738, 989
MaeII	ACGT	2 cut(s)	338, 525
MaeIII	GTNAC	2 cut(s)	194, 1003
MalI	GATC	6 cut(s)	27, 36, 66, 840, 846, 1226
MbiI	CCGCTC	2 cut(s)	420, 1041
MboI	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
MboII	GAAGA	4 cut(s)	13, 125, 140, 302
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	3 cut(s)	562, 634, 920
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	8, 228, 367, 529, 853, 1017
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1144
MmeI	TCCRAC	3 cut(s)	265, 411, 676
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1118
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	11, 522, 1176, 1196
MslI	CAYNNNNRTG	3 cut(s)	209, 962, 1121
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	40, 89
MspI	CCGG	1 cut(s)	621
Mva1269I	GAATGC	4 cut(s)	55, 356, 365, 729
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	6 cut(s)	50, 360, 369, 378, 915, 953
NdeII	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	9 cut(s)	214, 260, 504, 517, 609, 839, 851, 1120, 1157
NlaIV	GGNNCC	4 cut(s)	633, 955, 1060, 1061
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	1118
PagI	TCATGA	2 cut(s)	847, 1153
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	4 cut(s)	55, 356, 365, 729
PfeI	GAWTC	1 cut(s)	612
PkrI	GCNGC	3 cut(s)	91, 1043, 1203
PleI	GAGTC	1 cut(s)	1144
PpsI	GAGTC	1 cut(s)	1144
PpuMI	RGGWCCY	1 cut(s)	1059
PsiI	TTATAA	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	1059
PspN4I	GGNNCC	4 cut(s)	633, 955, 1060, 1061
PspPI	GGNCC	2 cut(s)	504, 1059
PspPPI	RGGWCCY	1 cut(s)	1059
PsrI	GAACNNNNNNTAC	2 cut(s)	996, 1028
PstNI	CAGNNNCTG	2 cut(s)	92, 192
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	6 cut(s)	439, 479, 512, 568, 883, 987
RsaNI	GTAC	6 cut(s)	438, 478, 511, 567, 882, 986
RseI	CAYNNNNRTG	3 cut(s)	209, 962, 1121
SalI	GTCGAC	2 cut(s)	451, 752
SaqAI	TTAA	4 cut(s)	11, 522, 1176, 1196
SatI	GCNGC	3 cut(s)	90, 1042, 1202
Sau3AI	GATC	6 cut(s)	25, 34, 64, 838, 844, 1224
Sau96I	GGNCC	2 cut(s)	504, 1059
SchI	GAGTC	1 cut(s)	1144
SduI	GDGCHC	3 cut(s)	562, 634, 920
SfaNI	GCATC	4 cut(s)	165, 462, 743, 938
SinI	GGWCC	2 cut(s)	504, 1059
SmiMI	CAYNNNNRTG	3 cut(s)	209, 962, 1121
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	6 cut(s)	8, 228, 367, 529, 853, 1017
SsiI	CCGC	3 cut(s)	89, 420, 1041
SspMI	CTAG	4 cut(s)	594, 720, 738, 989
StyI	CCWWGG	2 cut(s)	635, 949
TaaI	ACNGT	4 cut(s)	457, 670, 881, 1012
TaiI	ACGT	2 cut(s)	341, 528
TaqI	TCGA	6 cut(s)	24, 33, 47, 432, 452, 753
TasI	AATT	6 cut(s)	8, 228, 367, 529, 853, 1017
TatI	WGTACW	3 cut(s)	510, 881, 985
TauI	GCSGC	2 cut(s)	92, 1044
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	4 cut(s)	11, 522, 1176, 1196
Tru9I	TTAA	4 cut(s)	11, 522, 1176, 1196
TscAI	CASTG	2 cut(s)	205, 925
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	1201
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	7 cut(s)	48, 782, 925, 957, 1133, 1155, 1170
TspRI	CASTG	2 cut(s)	205, 925
VneI	GTGCAC	1 cut(s)	916
VpaK11BI	GGWCC	2 cut(s)	504, 1059
XmiI	GTMKAC	2 cut(s)	452, 753
XspI	CTAG	4 cut(s)	594, 720, 738, 989
Zsp2I	ATGCAT	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.